Wall clock time and date at job start Tue Mar 31 2020 05:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47620 * 2 1 4 4 C 1.52993 * 109.47276 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47182 * 179.97438 * 4 3 2 6 6 C 1.52993 * 109.47182 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46940 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.46901 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.47335 * 55.00375 * 8 7 6 10 10 C 1.53007 * 109.46786 * 174.99866 * 8 7 6 11 11 N 1.46892 * 109.47148 * 294.99794 * 8 7 6 12 12 C 1.46908 * 111.00068 * 133.47940 * 11 8 7 13 13 C 1.50704 * 110.00979 * 300.56996 * 12 11 8 14 14 H 1.08001 * 119.99722 * 114.34701 * 13 12 11 15 15 C 1.37873 * 120.00329 * 294.34093 * 13 12 11 16 16 N 1.31515 * 119.99704 * 0.43022 * 15 13 12 17 17 Si 1.86798 * 120.00175 * 180.42939 * 15 13 12 18 18 H 1.48502 * 109.47157 * 89.99975 * 17 15 13 19 19 H 1.48498 * 109.47105 * 209.99893 * 17 15 13 20 20 H 1.48500 * 109.47288 * 330.00146 * 17 15 13 21 21 C 1.54265 * 110.03258 * 179.18432 * 12 11 8 22 22 C 1.54970 * 104.15563 * 217.13312 * 21 12 11 23 23 C 1.54891 * 102.77876 * 37.88392 * 22 21 12 24 24 C 1.53870 * 110.03277 * 61.95914 * 12 11 8 25 25 H 1.08994 * 109.47594 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46832 * 300.00365 * 1 2 3 27 27 H 1.09007 * 109.47065 * 59.99620 * 1 2 3 28 28 H 1.09008 * 109.47208 * 240.00246 * 2 1 3 29 29 H 1.08999 * 109.47174 * 120.00044 * 2 1 3 30 30 H 1.09000 * 109.46491 * 59.99538 * 3 2 1 31 31 H 1.08999 * 109.46883 * 300.00222 * 3 2 1 32 32 H 1.09008 * 109.47254 * 60.00428 * 4 3 2 33 33 H 1.08999 * 109.47472 * 300.00016 * 4 3 2 34 34 H 1.09008 * 109.46406 * 60.00240 * 5 4 3 35 35 H 1.08999 * 109.47201 * 300.00514 * 5 4 3 36 36 H 1.08994 * 109.47227 * 60.00652 * 6 5 4 37 37 H 1.08999 * 109.47472 * 300.00347 * 6 5 4 38 38 H 1.09001 * 109.47164 * 60.00395 * 7 6 5 39 39 H 1.08999 * 109.47046 * 299.99654 * 7 6 5 40 40 H 1.08998 * 109.47120 * 58.58730 * 10 8 7 41 41 H 1.09003 * 109.46807 * 178.58299 * 10 8 7 42 42 H 1.08999 * 109.47030 * 298.57992 * 10 8 7 43 43 H 1.00895 * 111.00338 * 9.52542 * 11 8 7 44 44 H 0.97005 * 119.99676 * 179.97438 * 16 15 13 45 45 H 1.09003 * 110.48574 * 335.77590 * 21 12 11 46 46 H 1.08993 * 110.48948 * 98.42566 * 21 12 11 47 47 H 1.08998 * 110.71827 * 279.56899 * 22 21 12 48 48 H 1.09001 * 110.76317 * 156.21785 * 22 21 12 49 49 H 1.08995 * 110.48888 * 203.40239 * 23 22 21 50 50 H 1.09004 * 110.48292 * 80.75847 * 23 22 21 51 51 H 1.09004 * 110.03128 * 238.57091 * 24 12 11 52 52 H 1.09003 * 110.03408 * 0.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6100 2.8848 0.0013 7 6 6.1201 4.3273 0.0013 8 6 7.6501 4.3272 0.0019 9 1 8.0138 3.7377 -0.8397 10 6 8.1602 5.7643 -0.1238 11 7 8.1392 3.7421 1.2574 12 6 9.2045 2.7632 1.0022 13 6 8.6879 1.6577 0.1178 14 1 9.0876 1.5311 -0.8775 15 6 7.7052 0.8079 0.5793 16 7 7.2126 0.9673 1.7882 17 14 7.0734 -0.5698 -0.5126 18 1 7.8876 -1.7915 -0.2891 19 1 5.6541 -0.8533 -0.1805 20 1 7.1764 -0.1600 -1.9362 21 6 9.7152 2.1785 2.3352 22 6 11.2402 2.0113 2.1162 23 6 11.6066 3.2662 1.2854 24 6 10.4064 3.4542 0.3347 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8892 33 1 3.9330 0.9287 0.8908 34 1 3.7164 3.3992 0.8896 35 1 3.7171 3.3983 -0.8904 36 1 5.9741 2.3704 -0.8880 37 1 5.9727 2.3716 0.8919 38 1 5.7561 4.8414 0.8909 39 1 5.7576 4.8409 -0.8892 40 1 7.7760 6.3600 0.7042 41 1 9.2499 5.7665 -0.0981 42 1 7.8182 6.1899 -1.0672 43 1 7.3837 3.3261 1.7809 44 1 6.5209 0.3696 2.1128 45 1 9.5213 2.8707 3.1546 46 1 9.2492 1.2130 2.5318 47 1 11.4517 1.1012 1.5549 48 1 11.7697 2.0106 3.0690 49 1 12.5204 3.0938 0.7169 50 1 11.7184 4.1344 1.9350 51 1 10.6167 2.9893 -0.6285 52 1 10.1995 4.5160 0.2005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258043683.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:26 Heat of formation + Delta-G solvation = -48.018598 kcal Electronic energy + Delta-G solvation = -24272.831491 eV Core-core repulsion = 21270.174139 eV Total energy + Delta-G solvation = -3002.657352 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -38.18991 -36.42818 -35.11253 -32.84654 -32.54268 -29.91939 -28.77299 -27.40235 -26.10386 -25.63498 -23.84940 -22.30704 -20.79290 -20.22375 -19.99492 -18.87470 -18.28300 -16.33798 -15.67187 -14.96317 -14.76984 -14.44280 -13.98497 -13.88971 -13.72713 -13.20222 -13.02699 -12.58326 -12.57773 -12.31724 -12.16329 -11.65390 -11.58276 -11.46897 -11.33655 -11.21830 -11.06289 -10.82603 -10.75709 -10.52681 -10.45995 -10.36497 -10.19666 -10.08631 -9.98175 -9.76689 -9.70723 -9.61953 -9.39317 -9.25112 -9.08240 -8.94247 -8.18956 -6.88304 -5.98473 -4.13658 3.23859 3.32463 3.36023 4.37274 4.90667 5.03201 5.15997 5.20006 5.44160 5.54247 5.64949 5.67176 5.78856 5.83891 5.85800 5.90207 5.93275 5.96899 5.99396 6.09650 6.14666 6.20287 6.25693 6.30690 6.37719 6.41204 6.48501 6.56612 6.59662 6.62016 6.67331 6.69507 6.76549 6.81906 6.88475 6.90435 6.93359 7.04643 7.13474 7.24356 7.33202 7.36301 7.46787 7.60723 7.70024 7.79929 8.00769 8.34133 8.80408 8.96485 9.21721 9.55264 10.94834 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.019353 B = 0.005244 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.484001 B = 5338.280885 C = 6230.427490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C -0.117 4.117 4 C -0.119 4.119 5 C -0.113 4.113 6 C -0.145 4.145 7 C -0.116 4.116 8 C 0.090 3.910 9 H 0.060 0.940 10 C -0.139 4.139 11 N -0.681 5.681 12 C 0.234 3.766 13 C -0.517 4.517 14 H 0.049 0.951 15 C 0.079 3.921 16 N -0.883 5.883 17 Si 0.869 3.131 18 H -0.285 1.285 19 H -0.279 1.279 20 H -0.277 1.277 21 C -0.097 4.097 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.118 4.118 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.121 0.879 38 H 0.050 0.950 39 H 0.041 0.959 40 H 0.044 0.956 41 H 0.053 0.947 42 H 0.034 0.966 43 H 0.352 0.648 44 H 0.262 0.738 45 H 0.037 0.963 46 H 0.086 0.914 47 H 0.056 0.944 48 H 0.040 0.960 49 H 0.041 0.959 50 H 0.050 0.950 51 H 0.045 0.955 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.733 2.456 -1.709 6.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.155 4.155 4 C -0.157 4.157 5 C -0.151 4.151 6 C -0.182 4.182 7 C -0.154 4.154 8 C -0.021 4.021 9 H 0.078 0.922 10 C -0.197 4.197 11 N -0.314 5.314 12 C 0.144 3.856 13 C -0.557 4.557 14 H 0.067 0.933 15 C -0.122 4.122 16 N -0.523 5.523 17 Si 0.697 3.303 18 H -0.211 1.211 19 H -0.204 1.204 20 H -0.202 1.202 21 C -0.135 4.135 22 C -0.159 4.159 23 C -0.156 4.156 24 C -0.156 4.156 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.139 0.861 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.053 0.947 43 H 0.173 0.827 44 H 0.072 0.928 45 H 0.056 0.944 46 H 0.105 0.895 47 H 0.075 0.925 48 H 0.059 0.941 49 H 0.060 0.940 50 H 0.069 0.931 51 H 0.064 0.936 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.445 2.894 -1.457 6.336 hybrid contribution -0.918 -1.626 -1.153 2.195 sum -6.363 1.268 -2.610 6.993 Atomic orbital electron populations 1.21774 0.96287 1.01185 1.01543 1.21560 0.95335 0.97585 1.02032 1.21625 0.96368 0.96055 1.01441 1.21617 0.94063 0.97812 1.02168 1.21576 0.97711 0.95513 1.00271 1.22182 0.92700 0.97146 1.06172 1.21805 0.96806 0.97018 0.99762 1.21242 0.91943 0.93787 0.95139 0.92168 1.22031 1.00841 0.97801 0.99056 1.61154 1.15647 1.37182 1.17425 1.19077 0.87445 0.87414 0.91628 1.21838 1.19722 1.13897 1.00223 0.93309 1.24789 0.96205 0.96527 0.94667 1.69766 1.28208 1.38435 1.15921 0.86995 0.78678 0.83132 0.81478 1.21148 1.20387 1.20183 1.22279 0.91755 1.02195 0.97264 1.22444 0.98669 0.97225 0.97563 1.22264 0.97407 0.97828 0.98078 1.22460 0.95495 1.00104 0.97552 0.93108 0.92866 0.92995 0.92328 0.92041 0.92283 0.92561 0.92802 0.91695 0.92942 0.93709 0.92954 0.86090 0.93161 0.94063 0.93652 0.92779 0.94675 0.82694 0.92762 0.94443 0.89543 0.92539 0.94097 0.94000 0.93142 0.93591 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 37.15 0.37 -1.21 16 2 C -0.13 -1.62 5.93 -26.73 -0.16 -1.78 16 3 C -0.12 -1.60 5.21 -26.73 -0.14 -1.74 16 4 C -0.12 -1.99 5.21 -26.73 -0.14 -2.13 16 5 C -0.11 -1.92 5.21 -26.73 -0.14 -2.06 16 6 C -0.14 -2.87 3.81 -26.73 -0.10 -2.97 16 7 C -0.12 -2.18 4.62 -26.73 -0.12 -2.30 16 8 C 0.09 1.82 1.85 -67.71 -0.13 1.69 16 9 H 0.06 1.36 6.37 -51.93 -0.33 1.03 16 10 C -0.14 -2.47 9.33 37.16 0.35 -2.12 16 11 N -0.68 -15.02 5.85 -93.08 -0.54 -15.57 16 12 C 0.23 5.33 0.48 -131.63 -0.06 5.27 16 13 C -0.52 -12.85 6.36 -34.44 -0.22 -13.07 16 14 H 0.05 1.28 7.35 -52.49 -0.39 0.89 16 15 C 0.08 1.92 2.85 -17.82 -0.05 1.87 16 16 N -0.88 -21.62 8.23 55.43 0.46 -21.17 16 17 Si 0.87 20.08 28.88 -169.99 -4.91 15.17 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C -0.10 -2.20 5.53 -25.03 -0.14 -2.34 16 22 C -0.12 -2.43 6.91 -24.69 -0.17 -2.60 16 23 C -0.12 -2.24 6.83 -25.07 -0.17 -2.41 16 24 C -0.12 -2.48 5.56 -25.62 -0.14 -2.62 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.96 8.14 -51.92 -0.42 0.53 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 1.14 7.27 -51.93 -0.38 0.76 16 37 H 0.12 2.68 3.53 -51.93 -0.18 2.50 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.97 5.54 -51.93 -0.29 0.68 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.35 8.32 5.40 -39.29 -0.21 8.10 16 44 H 0.26 6.33 8.31 -40.82 -0.34 5.99 16 45 H 0.04 0.86 8.05 -51.93 -0.42 0.44 16 46 H 0.09 2.18 5.92 -51.93 -0.31 1.87 16 47 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 48 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 51 H 0.05 0.99 7.38 -51.93 -0.38 0.61 16 52 H 0.06 1.20 4.66 -51.93 -0.24 0.95 16 LS Contribution 374.38 15.07 5.64 5.64 Total: -1.00 -23.44 374.38 -10.82 -34.26 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: -10.30 Total: 12.20 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: -1.17 Total: -30.53 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: -0.09 Total: -36.74 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.91 Total: 15.17 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -23.44 -10.82 -34.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258043683.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.761 kcal (2) G-P(sol) polarization free energy of solvation -23.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds