Wall clock time and date at job start Tue Mar 31 2020 06:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46815 * 2 1 4 4 C 1.52995 * 109.47324 * 119.99579 * 2 1 3 5 5 C 1.53006 * 109.47207 * 175.00108 * 4 2 1 6 6 H 1.08993 * 109.46801 * 55.00361 * 5 4 2 7 7 C 1.53001 * 109.47013 * 295.00332 * 5 4 2 8 8 C 1.52999 * 109.47268 * 175.00274 * 5 4 2 9 9 C 1.53002 * 109.47195 * 294.46354 * 8 5 4 10 10 H 1.08995 * 109.47409 * 54.53740 * 9 8 5 11 11 C 1.52996 * 109.47410 * 174.54562 * 9 8 5 12 12 N 1.46901 * 109.46875 * 294.54265 * 9 8 5 13 13 C 1.46903 * 111.00359 * 156.40999 * 12 9 8 14 14 H 1.08997 * 109.40866 * 34.99810 * 13 12 9 15 15 C 1.52952 * 109.41472 * 154.85941 * 13 12 9 16 16 C 1.53238 * 109.40221 * 183.63396 * 15 13 12 17 17 C 1.51261 * 108.53608 * 305.37043 * 16 15 13 18 18 C 1.37880 * 120.85369 * 231.32381 * 17 16 15 19 19 N 1.31517 * 119.99312 * 0.02562 * 18 17 16 20 20 Si 1.86795 * 120.00239 * 180.02562 * 18 17 16 21 21 H 1.48497 * 109.47254 * 60.00360 * 20 18 17 22 22 H 1.48503 * 109.46939 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47081 * 299.99691 * 20 18 17 24 24 C 1.51275 * 118.29988 * 51.34892 * 17 16 15 25 25 C 1.52964 * 109.35508 * 275.18019 * 13 12 9 26 26 H 1.08997 * 109.47031 * 299.99976 * 1 2 3 27 27 H 1.09000 * 109.47272 * 60.00055 * 1 2 3 28 28 H 1.09002 * 109.46502 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47031 * 240.00023 * 2 1 3 30 30 H 1.08997 * 109.46945 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46654 * 299.99945 * 3 2 1 32 32 H 1.08997 * 109.47302 * 60.00189 * 3 2 1 33 33 H 1.09008 * 109.47181 * 55.00408 * 4 2 1 34 34 H 1.08996 * 109.47480 * 295.00412 * 4 2 1 35 35 H 1.08998 * 109.47565 * 56.40294 * 7 5 4 36 36 H 1.08998 * 109.46930 * 176.40610 * 7 5 4 37 37 H 1.09000 * 109.46808 * 296.39735 * 7 5 4 38 38 H 1.09002 * 109.47303 * 174.46454 * 8 5 4 39 39 H 1.09006 * 109.47412 * 54.45783 * 8 5 4 40 40 H 1.08998 * 109.47620 * 59.99762 * 11 9 8 41 41 H 1.09003 * 109.47443 * 180.02562 * 11 9 8 42 42 H 1.08998 * 109.46775 * 299.99521 * 11 9 8 43 43 H 1.00903 * 111.00301 * 32.45344 * 12 9 8 44 44 H 1.08998 * 109.48332 * 303.60956 * 15 13 12 45 45 H 1.08994 * 109.48418 * 63.65940 * 15 13 12 46 46 H 1.09002 * 109.62282 * 65.08858 * 16 15 13 47 47 H 1.09002 * 109.62326 * 185.46098 * 16 15 13 48 48 H 0.97006 * 119.99767 * 180.02562 * 19 18 17 49 49 H 1.09001 * 109.62223 * 68.36775 * 24 17 16 50 50 H 1.08999 * 109.62401 * 188.74180 * 24 17 16 51 51 H 1.09008 * 109.47614 * 296.30685 * 25 13 12 52 52 H 1.08994 * 109.48532 * 56.34406 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 3.5649 -0.8309 1.1879 6 1 3.9954 0.1613 1.0527 7 6 3.9650 -1.7250 0.0126 8 6 4.0853 -1.4392 2.4918 9 6 3.8065 -0.4787 3.6497 10 1 2.7447 -0.2332 3.6705 11 6 4.2025 -1.1428 4.9699 12 7 4.5896 0.7504 3.4656 13 6 3.9761 1.8777 4.1806 14 1 3.5269 1.5181 5.1062 15 6 5.0493 2.9175 4.5066 16 6 4.4274 4.0497 5.3310 17 6 3.2378 4.5979 4.5744 18 6 3.1103 5.9509 4.3415 19 7 4.0302 6.7828 4.7787 20 14 1.6310 6.6021 3.4051 21 1 0.3874 6.2449 4.1337 22 1 1.7300 8.0793 3.2886 23 1 1.6000 6.0001 2.0480 24 6 2.1912 3.6238 4.0803 25 6 2.8942 2.5071 3.3014 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6055 -1.7198 1.2952 34 1 1.7517 -0.1582 2.1369 35 1 3.5403 -1.3261 -0.9085 36 1 5.0515 -1.7519 -0.0700 37 1 3.5884 -2.7342 0.1793 38 1 5.1590 -1.6084 2.4107 39 1 3.5809 -2.3876 2.6771 40 1 5.2643 -1.3882 4.9491 41 1 4.0034 -0.4587 5.7948 42 1 3.6214 -2.0548 5.1065 43 1 4.7042 0.9630 2.4859 44 1 5.8487 2.4476 5.0795 45 1 5.4557 3.3233 3.5803 46 1 4.1008 3.6629 6.2963 47 1 5.1636 4.8390 5.4830 48 1 3.9404 7.7348 4.6153 49 1 1.6576 3.1976 4.9299 50 1 1.4877 4.1417 3.4285 51 1 3.3517 2.9226 2.4034 52 1 2.1662 1.7463 3.0199 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258058928.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:32 Heat of formation + Delta-G solvation = -56.912584 kcal Electronic energy + Delta-G solvation = -24426.246649 eV Core-core repulsion = 21423.203625 eV Total energy + Delta-G solvation = -3003.043024 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.01671 -37.15338 -35.31432 -33.13292 -31.82288 -29.79446 -29.42083 -27.13864 -26.92952 -26.47829 -25.90035 -21.96494 -21.31847 -21.07128 -20.13376 -19.31756 -19.04548 -16.22612 -15.76037 -15.31424 -15.03545 -14.45572 -14.36495 -13.95027 -13.60520 -13.28299 -12.99210 -12.84038 -12.67671 -12.47363 -12.32854 -12.11744 -12.06788 -11.98323 -11.76643 -11.74556 -11.39827 -11.37789 -11.09935 -11.07290 -10.91248 -10.71136 -10.62799 -10.43203 -10.22071 -10.17724 -10.13845 -9.96294 -9.71633 -9.64493 -8.81594 -8.67086 -8.43263 -7.69400 -6.05524 -3.95442 3.29425 3.36388 3.37412 4.41239 4.61662 4.67555 4.79074 4.81478 4.99023 5.17783 5.22297 5.26386 5.43916 5.46121 5.55021 5.61723 5.67351 5.67966 5.75440 5.77503 5.85426 5.93699 5.94285 5.96323 5.99221 6.02314 6.05482 6.09625 6.16823 6.26086 6.27328 6.30137 6.40010 6.46176 6.49344 6.55488 6.58815 6.81843 6.87489 6.95813 7.03504 7.05045 7.26866 7.43534 7.66694 7.74923 7.80217 7.94450 8.03452 8.46080 9.02715 9.59351 11.04338 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.015381 B = 0.005817 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.029897 B = 4812.067589 C = 6089.117742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.154 4.154 4 C -0.112 4.112 5 C -0.098 4.098 6 H 0.076 0.924 7 C -0.146 4.146 8 C -0.114 4.114 9 C 0.080 3.920 10 H 0.044 0.956 11 C -0.138 4.138 12 N -0.685 5.685 13 C 0.100 3.900 14 H 0.063 0.937 15 C -0.093 4.093 16 C 0.009 3.991 17 C -0.485 4.485 18 C 0.075 3.925 19 N -0.891 5.891 20 Si 0.888 3.112 21 H -0.276 1.276 22 H -0.293 1.293 23 H -0.275 1.275 24 C -0.007 4.007 25 C -0.131 4.131 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.047 0.953 43 H 0.334 0.666 44 H 0.035 0.965 45 H 0.045 0.955 46 H 0.001 0.999 47 H 0.056 0.944 48 H 0.264 0.736 49 H 0.014 0.986 50 H 0.020 0.980 51 H 0.051 0.949 52 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.741 -16.152 -8.172 18.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 C -0.211 4.211 4 C -0.150 4.150 5 C -0.117 4.117 6 H 0.094 0.906 7 C -0.203 4.203 8 C -0.152 4.152 9 C -0.030 4.030 10 H 0.062 0.938 11 C -0.196 4.196 12 N -0.317 5.317 13 C -0.009 4.009 14 H 0.081 0.919 15 C -0.131 4.131 16 C -0.028 4.028 17 C -0.504 4.504 18 C -0.127 4.127 19 N -0.529 5.529 20 Si 0.717 3.283 21 H -0.202 1.202 22 H -0.219 1.219 23 H -0.201 1.201 24 C -0.045 4.045 25 C -0.170 4.170 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.153 0.847 44 H 0.053 0.947 45 H 0.064 0.936 46 H 0.019 0.981 47 H 0.074 0.926 48 H 0.074 0.926 49 H 0.033 0.967 50 H 0.039 0.961 51 H 0.069 0.931 52 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -2.231 -16.114 -7.653 17.978 hybrid contribution -1.627 0.689 -1.143 2.105 sum -3.858 -15.425 -8.796 18.171 Atomic orbital electron populations 1.21844 0.95682 1.01181 1.01781 1.21154 0.95301 0.96642 0.98393 1.21974 1.01273 0.95694 1.02131 1.21774 0.94975 1.00096 0.98120 1.21257 0.95719 0.99873 0.94840 0.90631 1.21860 1.00971 0.99380 0.98094 1.21796 1.01427 0.98258 0.93677 1.21520 0.95989 0.90867 0.94643 0.93806 1.21783 1.01393 0.99246 0.97188 1.60870 1.51079 1.03184 1.16581 1.21487 0.94159 0.89445 0.95765 0.91896 1.21563 0.95807 0.95760 0.99983 1.19381 0.96261 0.93815 0.93381 1.20038 1.05502 0.90378 1.34471 1.24828 0.95908 0.96411 0.95535 1.69832 1.33824 1.03138 1.46063 0.86706 0.83569 0.77289 0.80765 1.20190 1.21901 1.20105 1.19565 0.95567 0.94472 0.94922 1.22258 0.97619 0.97955 0.99182 0.92625 0.92992 0.93111 0.91410 0.92424 0.93227 0.91886 0.92433 0.91404 0.92597 0.92897 0.93066 0.91355 0.91976 0.92412 0.92716 0.93444 0.84697 0.94674 0.93605 0.98093 0.92580 0.92642 0.96742 0.96115 0.93052 0.95187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.19 37.16 0.34 -1.18 16 2 C -0.10 -1.04 2.79 -90.62 -0.25 -1.29 16 3 C -0.15 -1.91 8.95 37.16 0.33 -1.58 16 4 C -0.11 -1.23 4.03 -26.73 -0.11 -1.34 16 5 C -0.10 -1.06 2.16 -90.62 -0.20 -1.26 16 6 H 0.08 0.92 4.49 -51.93 -0.23 0.69 16 7 C -0.15 -1.37 9.03 37.16 0.34 -1.03 16 8 C -0.11 -1.28 4.27 -26.73 -0.11 -1.39 16 9 C 0.08 1.08 2.34 -67.71 -0.16 0.92 16 10 H 0.04 0.64 5.20 -51.93 -0.27 0.37 16 11 C -0.14 -1.81 9.38 37.16 0.35 -1.46 16 12 N -0.69 -10.90 6.05 -99.79 -0.60 -11.51 16 13 C 0.10 1.91 2.18 -67.75 -0.15 1.76 16 14 H 0.06 1.26 7.00 -51.93 -0.36 0.90 16 15 C -0.09 -2.02 5.54 -26.63 -0.15 -2.16 16 16 C 0.01 0.24 5.96 -27.48 -0.16 0.08 16 17 C -0.48 -12.86 5.51 -98.92 -0.55 -13.41 16 18 C 0.08 2.09 5.46 -17.82 -0.10 1.99 16 19 N -0.89 -25.96 12.74 55.43 0.71 -25.26 16 20 Si 0.89 21.57 26.80 -169.99 -4.56 17.02 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C -0.01 -0.17 5.59 -27.49 -0.15 -0.32 16 25 C -0.13 -2.58 4.74 -26.64 -0.13 -2.71 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.68 6.27 -51.93 -0.33 0.36 16 30 H 0.06 0.72 6.46 -51.93 -0.34 0.38 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.90 7.03 -51.93 -0.36 0.54 16 33 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.07 0.86 5.29 -51.93 -0.27 0.59 16 35 H 0.06 0.51 6.31 -51.93 -0.33 0.18 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.79 7.32 -51.93 -0.38 0.41 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.33 5.18 6.20 -39.29 -0.24 4.93 16 44 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.00 0.02 8.14 -51.93 -0.42 -0.41 16 47 H 0.06 1.56 7.08 -51.93 -0.37 1.19 16 48 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 49 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.02 0.48 5.17 -51.93 -0.27 0.21 16 51 H 0.05 1.05 8.14 -51.92 -0.42 0.63 16 52 H 0.03 0.53 5.73 -51.93 -0.30 0.23 16 LS Contribution 372.19 15.07 5.61 5.61 Total: -1.00 -27.16 372.19 -9.65 -36.81 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -9.95 Total: 1.70 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: -0.85 Total: -24.38 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.10 Total: -36.76 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.56 Total: 17.02 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -27.16 -9.65 -36.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258058928.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.105 kcal (2) G-P(sol) polarization free energy of solvation -27.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds