Wall clock time and date at job start Tue Mar 31 2020 06:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46815 * 2 1 4 4 C 1.52995 * 109.47324 * 119.99579 * 2 1 3 5 5 C 1.53006 * 109.47207 * 175.00108 * 4 2 1 6 6 H 1.08993 * 109.46801 * 55.00361 * 5 4 2 7 7 C 1.53001 * 109.47013 * 295.00332 * 5 4 2 8 8 C 1.52999 * 109.47268 * 175.00274 * 5 4 2 9 9 C 1.53002 * 109.47195 * 294.46354 * 8 5 4 10 10 H 1.08995 * 109.47409 * 54.53740 * 9 8 5 11 11 C 1.52996 * 109.47410 * 174.54562 * 9 8 5 12 12 N 1.46901 * 109.46875 * 294.54265 * 9 8 5 13 13 C 1.46903 * 111.00359 * 156.40999 * 12 9 8 14 14 H 1.08997 * 109.40866 * 34.99810 * 13 12 9 15 15 C 1.52952 * 109.41472 * 154.85941 * 13 12 9 16 16 C 1.53238 * 109.40221 * 183.63396 * 15 13 12 17 17 C 1.51261 * 108.53608 * 305.37043 * 16 15 13 18 18 C 1.37880 * 120.85369 * 231.32381 * 17 16 15 19 19 N 1.31517 * 119.99312 * 0.02562 * 18 17 16 20 20 Si 1.86795 * 120.00239 * 180.02562 * 18 17 16 21 21 H 1.48497 * 109.47254 * 60.00360 * 20 18 17 22 22 H 1.48503 * 109.46939 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47081 * 299.99691 * 20 18 17 24 24 C 1.51275 * 118.29988 * 51.34892 * 17 16 15 25 25 C 1.52964 * 109.35508 * 275.18019 * 13 12 9 26 26 H 1.08997 * 109.47031 * 299.99976 * 1 2 3 27 27 H 1.09000 * 109.47272 * 60.00055 * 1 2 3 28 28 H 1.09002 * 109.46502 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47031 * 240.00023 * 2 1 3 30 30 H 1.08997 * 109.46945 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46654 * 299.99945 * 3 2 1 32 32 H 1.08997 * 109.47302 * 60.00189 * 3 2 1 33 33 H 1.09008 * 109.47181 * 55.00408 * 4 2 1 34 34 H 1.08996 * 109.47480 * 295.00412 * 4 2 1 35 35 H 1.08998 * 109.47565 * 56.40294 * 7 5 4 36 36 H 1.08998 * 109.46930 * 176.40610 * 7 5 4 37 37 H 1.09000 * 109.46808 * 296.39735 * 7 5 4 38 38 H 1.09002 * 109.47303 * 174.46454 * 8 5 4 39 39 H 1.09006 * 109.47412 * 54.45783 * 8 5 4 40 40 H 1.08998 * 109.47620 * 59.99762 * 11 9 8 41 41 H 1.09003 * 109.47443 * 180.02562 * 11 9 8 42 42 H 1.08998 * 109.46775 * 299.99521 * 11 9 8 43 43 H 1.00903 * 111.00301 * 32.45344 * 12 9 8 44 44 H 1.08998 * 109.48332 * 303.60956 * 15 13 12 45 45 H 1.08994 * 109.48418 * 63.65940 * 15 13 12 46 46 H 1.09002 * 109.62282 * 65.08858 * 16 15 13 47 47 H 1.09002 * 109.62326 * 185.46098 * 16 15 13 48 48 H 0.97006 * 119.99767 * 180.02562 * 19 18 17 49 49 H 1.09001 * 109.62223 * 68.36775 * 24 17 16 50 50 H 1.08999 * 109.62401 * 188.74180 * 24 17 16 51 51 H 1.09008 * 109.47614 * 296.30685 * 25 13 12 52 52 H 1.08994 * 109.48532 * 56.34406 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 3.5649 -0.8309 1.1879 6 1 3.9954 0.1613 1.0527 7 6 3.9650 -1.7250 0.0126 8 6 4.0853 -1.4392 2.4918 9 6 3.8065 -0.4787 3.6497 10 1 2.7447 -0.2332 3.6705 11 6 4.2025 -1.1428 4.9699 12 7 4.5896 0.7504 3.4656 13 6 3.9761 1.8777 4.1806 14 1 3.5269 1.5181 5.1062 15 6 5.0493 2.9175 4.5066 16 6 4.4274 4.0497 5.3310 17 6 3.2378 4.5979 4.5744 18 6 3.1103 5.9509 4.3415 19 7 4.0302 6.7828 4.7787 20 14 1.6310 6.6021 3.4051 21 1 0.3874 6.2449 4.1337 22 1 1.7300 8.0793 3.2886 23 1 1.6000 6.0001 2.0480 24 6 2.1912 3.6238 4.0803 25 6 2.8942 2.5071 3.3014 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6055 -1.7198 1.2952 34 1 1.7517 -0.1582 2.1369 35 1 3.5403 -1.3261 -0.9085 36 1 5.0515 -1.7519 -0.0700 37 1 3.5884 -2.7342 0.1793 38 1 5.1590 -1.6084 2.4107 39 1 3.5809 -2.3876 2.6771 40 1 5.2643 -1.3882 4.9491 41 1 4.0034 -0.4587 5.7948 42 1 3.6214 -2.0548 5.1065 43 1 4.7042 0.9630 2.4859 44 1 5.8487 2.4476 5.0795 45 1 5.4557 3.3233 3.5803 46 1 4.1008 3.6629 6.2963 47 1 5.1636 4.8390 5.4830 48 1 3.9404 7.7348 4.6153 49 1 1.6576 3.1976 4.9299 50 1 1.4877 4.1417 3.4285 51 1 3.3517 2.9226 2.4034 52 1 2.1662 1.7463 3.0199 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258058928.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:31 Heat of formation + Delta-G solvation = -70.025206 kcal Electronic energy + Delta-G solvation = -24426.815255 eV Core-core repulsion = 21423.203625 eV Total energy + Delta-G solvation = -3003.611630 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.17624 -38.50617 -36.62122 -34.57909 -33.27540 -31.51394 -31.05838 -28.08386 -27.97604 -27.60877 -27.11668 -23.74665 -23.07463 -22.14324 -21.17143 -21.03185 -19.98851 -18.10540 -16.74532 -16.55509 -16.37051 -16.20406 -15.60180 -14.97308 -14.83491 -14.62568 -14.46881 -14.19665 -14.07212 -13.94300 -13.64816 -13.37224 -13.30569 -13.11323 -12.92171 -12.76740 -12.69815 -12.67116 -12.54202 -12.31480 -12.17035 -12.12360 -11.95148 -11.86900 -11.61916 -11.53388 -11.46944 -11.20291 -11.02310 -10.90588 -10.73748 -10.55223 -10.51797 -9.07948 -8.17051 -6.10231 1.35947 1.36453 1.44848 2.38618 3.07820 3.40443 3.79752 3.88490 3.95289 4.09848 4.11998 4.27016 4.32605 4.40664 4.48899 4.54019 4.63451 4.66109 4.74720 4.76949 4.78864 4.84408 4.89624 4.95578 4.97319 5.01437 5.04365 5.07570 5.09202 5.11387 5.13623 5.17441 5.21376 5.22483 5.24751 5.34232 5.36986 5.41117 5.44256 5.50721 5.53693 5.58139 5.60981 5.65218 5.68794 5.79830 5.86926 6.35706 6.38629 6.70192 6.96115 7.46962 8.94299 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.015381 B = 0.005817 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.029897 B = 4812.067589 C = 6089.117742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.154 4.154 4 C -0.108 4.108 5 C -0.096 4.096 6 H 0.060 0.940 7 C -0.142 4.142 8 C -0.105 4.105 9 C 0.079 3.921 10 H 0.038 0.962 11 C -0.136 4.136 12 N -0.683 5.683 13 C 0.114 3.886 14 H 0.056 0.944 15 C -0.082 4.082 16 C 0.007 3.993 17 C -0.495 4.495 18 C 0.021 3.979 19 N -0.932 5.932 20 Si 0.940 3.060 21 H -0.269 1.269 22 H -0.293 1.293 23 H -0.266 1.266 24 C -0.011 4.011 25 C -0.117 4.117 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.035 0.965 42 H 0.069 0.931 43 H 0.338 0.662 44 H 0.043 0.957 45 H 0.033 0.967 46 H -0.005 1.005 47 H 0.022 0.978 48 H 0.262 0.738 49 H 0.016 0.984 50 H 0.021 0.979 51 H 0.043 0.957 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.791 -18.830 -9.744 21.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.211 4.211 4 C -0.145 4.145 5 C -0.115 4.115 6 H 0.078 0.922 7 C -0.199 4.199 8 C -0.143 4.143 9 C -0.031 4.031 10 H 0.056 0.944 11 C -0.194 4.194 12 N -0.315 5.315 13 C 0.004 3.996 14 H 0.075 0.925 15 C -0.121 4.121 16 C -0.031 4.031 17 C -0.514 4.514 18 C -0.177 4.177 19 N -0.572 5.572 20 Si 0.767 3.233 21 H -0.194 1.194 22 H -0.220 1.220 23 H -0.191 1.191 24 C -0.049 4.049 25 C -0.157 4.157 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.088 0.912 43 H 0.158 0.842 44 H 0.062 0.938 45 H 0.052 0.948 46 H 0.014 0.986 47 H 0.041 0.959 48 H 0.071 0.929 49 H 0.035 0.965 50 H 0.040 0.960 51 H 0.062 0.938 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.289 -18.819 -9.232 21.218 hybrid contribution -1.264 1.479 -0.596 2.035 sum -4.553 -17.340 -9.828 20.445 Atomic orbital electron populations 1.21840 0.95298 1.01930 1.01369 1.21137 0.95591 0.95483 0.98880 1.21969 1.01076 0.96838 1.01194 1.21727 0.95107 1.00428 0.97284 1.21215 0.95484 0.99422 0.95331 0.92173 1.21818 1.01164 0.99520 0.97389 1.21731 1.01703 0.98168 0.92686 1.21618 0.95186 0.90161 0.96107 0.94444 1.21775 1.01829 0.99701 0.96109 1.60775 1.51168 1.02884 1.16637 1.21170 0.92868 0.89714 0.95824 0.92526 1.21375 0.96667 0.95320 0.98699 1.19342 0.95701 0.94187 0.93870 1.20637 1.06188 0.91121 1.33492 1.25588 0.98320 0.96954 0.96824 1.69975 1.35870 1.03248 1.48130 0.85845 0.80808 0.76615 0.80029 1.19382 1.22011 1.19074 1.19601 0.94982 0.94901 0.95390 1.22097 0.97950 0.97312 0.98302 0.93865 0.92615 0.91785 0.90123 0.92728 0.92888 0.94042 0.91162 0.93281 0.92271 0.92742 0.92005 0.91288 0.90271 0.92379 0.94553 0.91215 0.84227 0.93841 0.94840 0.98640 0.95934 0.92894 0.96525 0.96018 0.93813 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.19 71.98 0.66 -2.03 16 2 C -0.09 -1.77 2.79 -10.79 -0.03 -1.80 16 3 C -0.15 -3.59 8.95 71.98 0.64 -2.95 16 4 C -0.11 -2.08 4.03 30.59 0.12 -1.95 16 5 C -0.10 -1.80 2.16 -10.79 -0.02 -1.83 16 6 H 0.06 1.34 4.49 -2.39 -0.01 1.33 16 7 C -0.14 -2.19 9.03 71.98 0.65 -1.54 16 8 C -0.11 -2.03 4.27 30.59 0.13 -1.90 16 9 C 0.08 1.96 2.34 44.91 0.11 2.06 16 10 H 0.04 1.01 5.20 -2.39 -0.01 1.00 16 11 C -0.14 -3.26 9.38 71.98 0.68 -2.59 16 12 N -0.68 -20.68 6.05 -469.61 -2.84 -23.52 16 13 C 0.11 4.25 2.18 44.89 0.10 4.35 16 14 H 0.06 2.22 7.00 -2.39 -0.02 2.20 16 15 C -0.08 -3.60 5.54 30.66 0.17 -3.43 16 16 C 0.01 0.36 5.96 30.11 0.18 0.54 16 17 C -0.50 -26.63 5.51 -16.17 -0.09 -26.72 16 18 C 0.02 1.18 5.46 84.65 0.46 1.65 16 19 N -0.93 -56.12 12.74 21.45 0.27 -55.84 16 20 Si 0.94 44.52 26.80 68.60 1.84 46.36 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 24 C -0.01 -0.49 5.59 30.10 0.17 -0.32 16 25 C -0.12 -4.52 4.74 30.66 0.15 -4.37 16 26 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 1.36 6.27 -2.39 -0.01 1.35 16 30 H 0.05 1.29 6.46 -2.39 -0.02 1.27 16 31 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.04 1.13 7.03 -2.39 -0.02 1.12 16 33 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.05 1.14 5.29 -2.39 -0.01 1.12 16 35 H 0.06 0.88 6.31 -2.39 -0.02 0.87 16 36 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.04 0.99 7.32 -2.39 -0.02 0.97 16 42 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.34 9.95 6.20 -89.69 -0.56 9.39 16 44 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.03 1.52 8.14 -2.39 -0.02 1.51 16 46 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 47 H 0.02 1.29 7.08 -2.39 -0.02 1.28 16 48 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 49 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.02 0.97 5.17 -2.39 -0.01 0.96 16 51 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 52 H 0.05 1.83 5.73 -2.39 -0.01 1.82 16 Total: -1.00 -59.04 372.19 3.65 -55.39 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.31 Total: 20.43 kcal Atomic # 6 Polarization: -46.89 SS G_CDS: 4.07 Total: -42.82 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -2.57 Total: -79.36 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.84 Total: 46.36 kcal Total: -59.04 3.65 -55.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258058928.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.635 kcal (2) G-P(sol) polarization free energy of solvation -59.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds