Wall clock time and date at job start Tue Mar 31 2020 06:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47213 * 2 1 4 4 C 1.53004 * 109.46674 * 119.99807 * 2 1 3 5 5 C 1.52998 * 109.47095 * 66.51538 * 4 2 1 6 6 H 1.09004 * 109.47086 * 306.59852 * 5 4 2 7 7 C 1.52995 * 109.46987 * 186.59766 * 5 4 2 8 8 C 1.53003 * 109.47162 * 66.59436 * 5 4 2 9 9 C 1.53007 * 109.46981 * 186.32292 * 8 5 4 10 10 H 1.08999 * 109.47105 * 174.33822 * 9 8 5 11 11 C 1.52994 * 109.47012 * 54.33465 * 9 8 5 12 12 N 1.46903 * 109.46919 * 294.33925 * 9 8 5 13 13 C 1.46852 * 110.99744 * 295.80936 * 12 9 8 14 14 C 1.53034 * 109.52406 * 174.15992 * 13 12 9 15 15 C 1.53124 * 109.27396 * 59.18187 * 14 13 12 16 16 C 1.50699 * 109.52119 * 182.43954 * 15 14 13 17 17 H 1.08002 * 120.00104 * 119.68549 * 16 15 14 18 18 C 1.37878 * 120.00280 * 299.68188 * 16 15 14 19 19 N 1.31514 * 119.99497 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00036 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47525 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46916 * 120.00369 * 20 18 16 23 23 H 1.48503 * 109.47200 * 239.99942 * 20 18 16 24 24 C 1.53112 * 109.16266 * 302.34473 * 15 14 13 25 25 C 1.46847 * 110.99976 * 171.60646 * 12 9 8 26 26 H 1.09005 * 109.46594 * 63.68799 * 1 2 3 27 27 H 1.08993 * 109.47193 * 183.68903 * 1 2 3 28 28 H 1.09004 * 109.47011 * 303.69289 * 1 2 3 29 29 H 1.08998 * 109.46896 * 239.99929 * 2 1 3 30 30 H 1.08999 * 109.47211 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46920 * 300.00082 * 3 2 1 32 32 H 1.09006 * 109.47382 * 59.99501 * 3 2 1 33 33 H 1.08998 * 109.47216 * 306.51058 * 4 2 1 34 34 H 1.09003 * 109.46527 * 186.51119 * 4 2 1 35 35 H 1.08995 * 109.47584 * 50.68305 * 7 5 4 36 36 H 1.08999 * 109.47365 * 170.68837 * 7 5 4 37 37 H 1.09008 * 109.47114 * 290.67976 * 7 5 4 38 38 H 1.09003 * 109.46931 * 66.32427 * 8 5 4 39 39 H 1.09003 * 109.47294 * 306.31868 * 8 5 4 40 40 H 1.08999 * 109.47477 * 300.00130 * 11 9 8 41 41 H 1.09001 * 109.47613 * 59.99893 * 11 9 8 42 42 H 1.08999 * 109.47214 * 179.97438 * 11 9 8 43 43 H 1.08994 * 109.46438 * 294.18049 * 13 12 9 44 44 H 1.09007 * 109.46236 * 54.15036 * 13 12 9 45 45 H 1.08999 * 109.50835 * 299.24648 * 14 13 12 46 46 H 1.08997 * 109.50514 * 179.12063 * 14 13 12 47 47 H 1.08995 * 109.52212 * 62.25433 * 15 14 13 48 48 H 0.97004 * 119.99536 * 179.97438 * 19 18 16 49 49 H 1.09000 * 109.50631 * 297.71762 * 24 15 14 50 50 H 1.08997 * 109.50493 * 177.59431 * 24 15 14 51 51 H 1.09002 * 109.45445 * 305.85067 * 25 12 9 52 52 H 1.08995 * 109.46211 * 65.81853 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6679 -2.2032 1.1702 6 1 0.5969 -2.2999 0.9923 7 6 2.0303 -2.8910 2.4879 8 6 2.4369 -2.8615 0.0229 9 6 1.9500 -4.3008 -0.1577 10 1 2.4241 -4.7371 -1.0369 11 6 0.4312 -4.3060 -0.3419 12 7 2.3018 -5.0894 1.0307 13 6 3.7589 -5.1897 1.1832 14 6 4.0880 -5.8898 2.5036 15 6 3.4585 -7.2857 2.5061 16 6 3.7284 -7.9575 3.8278 17 1 2.9050 -8.2620 4.4569 18 6 5.0265 -8.1835 4.2340 19 7 6.0291 -7.8124 3.4681 20 14 5.3609 -9.0155 5.8726 21 1 4.0724 -9.3316 6.5395 22 1 6.1207 -10.2709 5.6443 23 1 6.1559 -8.1060 6.7365 24 6 1.9473 -7.1560 2.2972 25 6 1.6803 -6.4190 0.9828 26 1 -0.3633 0.4556 -0.9213 27 1 -0.3633 -1.0255 0.0661 28 1 -0.3633 0.5701 0.8551 29 1 1.8933 -0.5138 -0.8900 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.5846 -0.2791 2.1354 34 1 3.1237 -0.6214 1.3095 35 1 1.6158 -2.3227 3.3205 36 1 1.6187 -3.9003 2.4962 37 1 3.1148 -2.9402 2.5858 38 1 3.5021 -2.8646 0.2541 39 1 2.2662 -2.3022 -0.8970 40 1 -0.0430 -3.8696 0.5372 41 1 0.1700 -3.7207 -1.2236 42 1 0.0843 -5.3312 -0.4710 43 1 4.1722 -5.7645 0.3545 44 1 4.1937 -4.1900 1.1841 45 1 3.6869 -5.3084 3.3338 46 1 5.1692 -5.9780 2.6092 47 1 3.8880 -7.8804 1.6999 48 1 6.9424 -7.9710 3.7540 49 1 1.5125 -6.5943 3.1240 50 1 1.4991 -8.1487 2.2553 51 1 0.6052 -6.3122 0.8381 52 1 2.1033 -6.9881 0.1550 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258068749.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:26 Heat of formation + Delta-G solvation = -30.744998 kcal Electronic energy + Delta-G solvation = -24213.376249 eV Core-core repulsion = 21211.467936 eV Total energy + Delta-G solvation = -3001.908313 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.36613 -37.33785 -35.00000 -32.96622 -31.59162 -30.20197 -29.12221 -27.27924 -26.60148 -26.18918 -25.35988 -22.35490 -21.69622 -20.97126 -20.15453 -18.66645 -18.43312 -16.48474 -15.75492 -15.62828 -14.62172 -14.49929 -14.23113 -14.09964 -13.76274 -13.24562 -13.15362 -12.75835 -12.58528 -12.50541 -12.36922 -12.27607 -11.96923 -11.84930 -11.66580 -11.46640 -11.30560 -11.17826 -11.03749 -10.89333 -10.77767 -10.65000 -10.56546 -10.36271 -10.15083 -10.07247 -9.92286 -9.86911 -9.82111 -9.33443 -8.84564 -8.60832 -8.24620 -7.45478 -5.93148 -3.98031 3.32607 3.40775 3.44911 4.44953 4.49397 4.77552 4.82387 4.90497 5.08558 5.18837 5.37199 5.41264 5.50655 5.51702 5.54940 5.63880 5.69212 5.72476 5.76071 5.80307 5.93723 5.97332 5.97831 5.99014 6.05469 6.13372 6.15405 6.20839 6.24101 6.27301 6.34514 6.37467 6.42010 6.46873 6.52895 6.63549 6.70766 6.71299 6.85626 6.94512 7.15377 7.24760 7.29840 7.52285 7.70613 7.80903 7.90965 8.11671 8.22751 8.53844 9.06067 9.66171 11.12870 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.026186 B = 0.003923 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.023111 B = 7135.081775 C = 7625.756667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 C -0.147 4.147 4 C -0.112 4.112 5 C -0.082 4.082 6 H 0.070 0.930 7 C -0.150 4.150 8 C -0.107 4.107 9 C 0.077 3.923 10 H 0.030 0.970 11 C -0.149 4.149 12 N -0.517 5.517 13 C 0.055 3.945 14 C -0.102 4.102 15 C 0.048 3.952 16 C -0.508 4.508 17 H 0.054 0.946 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.888 3.112 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.285 1.285 24 C -0.105 4.105 25 C 0.053 3.947 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.027 0.973 36 H 0.101 0.899 37 H 0.047 0.953 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.017 0.983 44 H 0.059 0.941 45 H 0.044 0.956 46 H 0.089 0.911 47 H 0.018 0.982 48 H 0.258 0.742 49 H 0.055 0.945 50 H 0.046 0.954 51 H 0.062 0.938 52 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.298 13.896 -8.408 18.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.204 4.204 4 C -0.150 4.150 5 C -0.100 4.100 6 H 0.088 0.912 7 C -0.207 4.207 8 C -0.145 4.145 9 C -0.031 4.031 10 H 0.048 0.952 11 C -0.206 4.206 12 N -0.243 5.243 13 C -0.072 4.072 14 C -0.140 4.140 15 C 0.030 3.970 16 C -0.546 4.546 17 H 0.072 0.928 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.716 3.284 21 H -0.199 1.199 22 H -0.212 1.212 23 H -0.211 1.211 24 C -0.143 4.143 25 C -0.075 4.075 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.046 0.954 36 H 0.120 0.880 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.036 0.964 44 H 0.077 0.923 45 H 0.062 0.938 46 H 0.107 0.893 47 H 0.036 0.964 48 H 0.067 0.933 49 H 0.074 0.926 50 H 0.065 0.935 51 H 0.081 0.919 52 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -9.284 14.132 -8.002 18.706 hybrid contribution 0.736 -0.824 0.100 1.109 sum -8.548 13.308 -7.902 17.681 Atomic orbital electron populations 1.21884 0.95590 1.01965 1.01030 1.21188 0.95713 0.95705 0.99223 1.21851 1.00850 0.96477 1.01260 1.21765 1.00610 0.95748 0.96856 1.21126 0.99788 0.92886 0.96198 0.91207 1.22153 1.01600 1.03057 0.93917 1.21752 1.00287 0.94361 0.98080 1.21588 0.95466 0.94263 0.91805 0.95250 1.22010 0.95608 1.01530 1.01499 1.62282 1.10917 1.14678 1.36395 1.22324 0.86050 0.99177 0.99652 1.21636 1.03420 0.96465 0.92489 1.18675 0.88949 0.92919 0.96493 1.21258 0.91788 1.37634 1.03929 0.92806 1.24964 0.96423 0.95746 0.96913 1.69895 0.98608 1.47654 1.36969 0.86605 0.78203 0.79209 0.84377 1.19858 1.21226 1.21116 1.21663 1.00385 0.97401 0.94840 1.22235 0.97917 0.88910 0.98441 0.93363 0.92172 0.93038 0.91135 0.92887 0.93176 0.92961 0.92423 0.92387 0.95418 0.88041 0.93404 0.91816 0.92411 0.91380 0.93076 0.92654 0.96425 0.92294 0.93754 0.89276 0.96381 0.93255 0.92582 0.93515 0.91928 0.96210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.06 37.16 0.34 -0.98 16 2 C -0.10 -0.95 2.82 -90.62 -0.26 -1.21 16 3 C -0.15 -1.28 9.19 37.16 0.34 -0.93 16 4 C -0.11 -1.23 4.12 -26.73 -0.11 -1.35 16 5 C -0.08 -1.00 1.96 -90.62 -0.18 -1.18 16 6 H 0.07 0.84 4.11 -51.93 -0.21 0.62 16 7 C -0.15 -2.23 7.87 37.16 0.29 -1.93 16 8 C -0.11 -1.36 4.42 -26.73 -0.12 -1.48 16 9 C 0.08 1.08 2.37 -67.71 -0.16 0.92 16 10 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 11 C -0.15 -1.80 8.19 37.15 0.30 -1.50 16 12 N -0.52 -8.65 1.36 -226.69 -0.31 -8.96 16 13 C 0.06 1.06 4.54 -3.83 -0.02 1.04 16 14 C -0.10 -2.37 5.12 -26.65 -0.14 -2.51 16 15 C 0.05 1.19 2.16 -91.65 -0.20 0.99 16 16 C -0.51 -13.97 8.56 -34.44 -0.29 -14.27 16 17 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.67 5.31 -17.82 -0.09 1.57 16 19 N -0.89 -25.52 11.37 55.43 0.63 -24.89 16 20 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 C -0.11 -2.19 5.32 -26.65 -0.14 -2.33 16 25 C 0.05 0.93 5.03 -3.83 -0.02 0.91 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.56 6.33 -51.93 -0.33 0.23 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.69 6.24 -51.93 -0.32 0.37 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.03 0.39 8.08 -51.93 -0.42 -0.03 16 36 H 0.10 1.70 5.80 -51.93 -0.30 1.40 16 37 H 0.05 0.77 7.06 -51.92 -0.37 0.41 16 38 H 0.06 0.89 6.09 -51.93 -0.32 0.57 16 39 H 0.06 0.65 6.25 -51.93 -0.32 0.33 16 40 H 0.07 0.83 6.20 -51.93 -0.32 0.51 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.68 6.19 -51.93 -0.32 0.35 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 1.06 5.31 -51.92 -0.28 0.79 16 45 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.09 2.34 6.17 -51.93 -0.32 2.02 16 47 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 49 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 50 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 51 H 0.06 0.98 5.84 -51.93 -0.30 0.67 16 52 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 367.43 15.07 5.54 5.54 Total: -1.00 -27.03 367.43 -9.63 -36.66 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -10.02 Total: -0.56 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -0.45 Total: -24.21 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.32 Total: -33.85 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -27.03 -9.63 -36.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258068749.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.916 kcal (2) G-P(sol) polarization free energy of solvation -27.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds