Wall clock time and date at job start Tue Mar 31 2020 06:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47251 * 2 1 4 4 C 1.53001 * 109.46994 * 119.99958 * 2 1 3 5 5 C 1.53004 * 109.47332 * 65.00154 * 4 2 1 6 6 H 1.09002 * 109.46722 * 304.99770 * 5 4 2 7 7 C 1.52993 * 109.47164 * 64.99806 * 5 4 2 8 8 C 1.52999 * 109.46978 * 185.00233 * 5 4 2 9 9 C 1.53006 * 109.46626 * 174.99863 * 8 5 4 10 10 H 1.09000 * 109.47314 * 54.99967 * 9 8 5 11 11 C 1.52997 * 109.46646 * 174.99857 * 9 8 5 12 12 N 1.46901 * 109.47113 * 294.99658 * 9 8 5 13 13 C 1.46847 * 110.99898 * 299.21158 * 12 9 8 14 14 C 1.53031 * 109.52306 * 174.16003 * 13 12 9 15 15 C 1.53119 * 109.28040 * 59.17889 * 14 13 12 16 16 C 1.50698 * 109.52905 * 182.44094 * 15 14 13 17 17 H 1.07995 * 120.00376 * 119.68170 * 16 15 14 18 18 C 1.37882 * 119.99725 * 299.68697 * 16 15 14 19 19 N 1.31512 * 120.00103 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99675 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47116 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47229 * 119.99959 * 20 18 16 23 23 H 1.48500 * 109.46708 * 239.99744 * 20 18 16 24 24 C 1.53117 * 109.15990 * 302.34800 * 15 14 13 25 25 C 1.46843 * 110.99835 * 175.00285 * 12 9 8 26 26 H 1.08997 * 109.46931 * 59.99912 * 1 2 3 27 27 H 1.09004 * 109.47294 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47374 * 300.00325 * 1 2 3 29 29 H 1.09005 * 109.47374 * 239.99675 * 2 1 3 30 30 H 1.08998 * 109.47142 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.46730 * 299.99905 * 3 2 1 32 32 H 1.09000 * 109.46748 * 60.00349 * 3 2 1 33 33 H 1.09005 * 109.47238 * 304.99786 * 4 2 1 34 34 H 1.09005 * 109.47077 * 185.00211 * 4 2 1 35 35 H 1.09002 * 109.47330 * 60.00337 * 7 5 4 36 36 H 1.09000 * 109.47130 * 180.02562 * 7 5 4 37 37 H 1.09001 * 109.47333 * 300.00442 * 7 5 4 38 38 H 1.08993 * 109.47839 * 54.99933 * 8 5 4 39 39 H 1.09000 * 109.47160 * 294.99494 * 8 5 4 40 40 H 1.09004 * 109.47394 * 299.99282 * 11 9 8 41 41 H 1.08990 * 109.47621 * 60.00181 * 11 9 8 42 42 H 1.09002 * 109.46731 * 179.97438 * 11 9 8 43 43 H 1.08998 * 109.46348 * 294.17530 * 13 12 9 44 44 H 1.09002 * 109.46395 * 54.14815 * 13 12 9 45 45 H 1.09005 * 109.50611 * 299.24112 * 14 13 12 46 46 H 1.09002 * 109.50700 * 179.12169 * 14 13 12 47 47 H 1.09005 * 109.52203 * 62.25007 * 15 14 13 48 48 H 0.96996 * 120.00199 * 180.02562 * 19 18 16 49 49 H 1.08996 * 109.50366 * 297.70880 * 24 15 14 50 50 H 1.09008 * 109.50643 * 177.59188 * 24 15 14 51 51 H 1.08995 * 109.46220 * 305.85525 * 25 12 9 52 52 H 1.08994 * 109.46310 * 65.82457 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6352 -2.1955 1.1880 6 1 0.5562 -2.2707 1.0528 7 6 2.3448 -2.8708 0.0128 8 6 2.0352 -2.8888 2.4919 9 6 1.5206 -4.3296 2.4821 10 1 1.8839 -4.8392 1.5897 11 6 2.0259 -5.0601 3.7279 12 7 0.0516 -4.3249 2.4794 13 6 -0.4748 -3.6615 3.6791 14 6 -1.9970 -3.5457 3.5732 15 6 -2.6020 -4.9454 3.4343 16 6 -4.0958 -4.8345 3.2695 17 1 -4.5705 -5.2157 2.3775 18 6 -4.8566 -4.2460 4.2575 19 7 -4.2786 -3.7822 5.3439 20 14 -6.7082 -4.1078 4.0528 21 1 -7.1080 -4.7007 2.7513 22 1 -7.3839 -4.8352 5.1571 23 1 -7.1045 -2.6771 4.0871 24 6 -2.0013 -5.6328 2.2050 25 6 -0.4788 -5.6881 2.3505 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6053 -0.2617 2.1370 34 1 3.1263 -0.6443 1.2952 35 1 3.4237 -2.7956 0.1480 36 1 2.0561 -3.9209 -0.0311 37 1 2.0598 -2.3768 -0.9162 38 1 1.6008 -2.3536 3.3362 39 1 3.1214 -2.8916 2.5835 40 1 3.1159 -5.0637 3.7299 41 1 1.6626 -4.5506 4.6202 42 1 1.6589 -6.0864 3.7211 43 1 -0.2155 -4.2470 4.5611 44 1 -0.0399 -2.6656 3.7637 45 1 -2.2567 -2.9487 2.6990 46 1 -2.3889 -3.0673 4.4708 47 1 -2.3755 -5.5303 4.3258 48 1 -4.8138 -3.3686 6.0391 49 1 -2.2610 -5.0687 1.3093 50 1 -2.3962 -6.6457 2.1251 51 1 -0.0469 -6.1642 1.4703 52 1 -0.2196 -6.2641 3.2388 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258068751.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:29 Heat of formation + Delta-G solvation = -42.469735 kcal Electronic energy + Delta-G solvation = -24062.852858 eV Core-core repulsion = 21060.436123 eV Total energy + Delta-G solvation = -3002.416736 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.18856 -37.43300 -35.04966 -33.09114 -31.62690 -29.78459 -29.16506 -27.11628 -26.73308 -26.34996 -25.36268 -22.52633 -21.98520 -21.03226 -19.47526 -19.20206 -18.15579 -16.33723 -15.67294 -15.40326 -14.84146 -14.49771 -14.07235 -14.05306 -13.78940 -13.43086 -13.37632 -12.91005 -12.68644 -12.51959 -12.33804 -12.12058 -11.99928 -11.76559 -11.70054 -11.51207 -11.35468 -11.20861 -11.10188 -10.96223 -10.86229 -10.67328 -10.51215 -10.34023 -10.17107 -10.07388 -10.06475 -9.96797 -9.72168 -9.33790 -8.88458 -8.61168 -8.24495 -7.56129 -5.92987 -3.97863 3.32664 3.40793 3.44996 4.48102 4.52928 4.71718 4.91762 4.98171 5.14026 5.28071 5.31866 5.37480 5.49132 5.55838 5.60830 5.66113 5.70227 5.74331 5.79294 5.83651 5.86547 5.91763 5.97868 6.02501 6.07246 6.08474 6.12639 6.13369 6.16849 6.22936 6.31311 6.36832 6.38211 6.40704 6.45134 6.53970 6.61783 6.72032 6.77015 6.84157 6.94490 7.16005 7.26044 7.53186 7.71642 7.82824 7.92372 8.11897 8.23126 8.54181 9.06241 9.66328 11.13118 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.015694 B = 0.004687 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.662696 B = 5972.699962 C = 7055.186834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.109 4.109 5 C -0.089 4.089 6 H 0.093 0.907 7 C -0.144 4.144 8 C -0.105 4.105 9 C 0.077 3.923 10 H 0.076 0.924 11 C -0.187 4.187 12 N -0.523 5.523 13 C 0.053 3.947 14 C -0.102 4.102 15 C 0.048 3.952 16 C -0.508 4.508 17 H 0.054 0.946 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.887 3.113 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.285 1.285 24 C -0.105 4.105 25 C 0.060 3.940 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.044 0.956 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.022 0.978 44 H 0.058 0.942 45 H 0.041 0.959 46 H 0.089 0.911 47 H 0.018 0.982 48 H 0.258 0.742 49 H 0.055 0.945 50 H 0.046 0.954 51 H 0.053 0.947 52 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.848 4.560 -7.776 17.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 C -0.204 4.204 4 C -0.147 4.147 5 C -0.107 4.107 6 H 0.111 0.889 7 C -0.201 4.201 8 C -0.143 4.143 9 C -0.032 4.032 10 H 0.094 0.906 11 C -0.246 4.246 12 N -0.247 5.247 13 C -0.074 4.074 14 C -0.141 4.141 15 C 0.030 3.970 16 C -0.547 4.547 17 H 0.072 0.928 18 C -0.140 4.140 19 N -0.532 5.532 20 Si 0.716 3.284 21 H -0.199 1.199 22 H -0.212 1.212 23 H -0.211 1.211 24 C -0.143 4.143 25 C -0.068 4.068 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.041 0.959 44 H 0.076 0.924 45 H 0.060 0.940 46 H 0.107 0.893 47 H 0.037 0.963 48 H 0.068 0.932 49 H 0.074 0.926 50 H 0.065 0.935 51 H 0.072 0.928 52 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 14.635 4.919 -8.020 17.398 hybrid contribution -0.697 -0.382 0.779 1.113 sum 13.938 4.537 -7.241 16.349 Atomic orbital electron populations 1.21893 0.94967 1.02608 1.01249 1.21149 0.96197 0.95478 0.98724 1.21853 1.00459 0.96642 1.01481 1.21702 0.99903 0.95562 0.97500 1.21120 1.02345 0.93044 0.94205 0.88862 1.21877 0.99365 1.00749 0.98129 1.21703 0.99278 0.95159 0.98170 1.21760 0.89038 0.95621 0.96759 0.90615 1.22477 1.00680 1.01152 1.00258 1.62200 1.04556 1.17933 1.40001 1.22320 0.98643 0.96947 0.89486 1.21633 0.89420 1.00553 1.02457 1.18672 0.94212 0.92140 0.91986 1.21264 0.91998 1.37777 1.03616 0.92799 1.24958 0.98175 0.95567 0.95281 1.69889 1.34945 1.40390 1.07927 0.86611 0.86188 0.77647 0.77995 1.19852 1.21193 1.21113 1.21666 0.91698 0.99750 1.01218 1.22098 0.97395 0.88735 0.98598 0.93402 0.91650 0.92760 0.91293 0.93155 0.93090 0.92853 0.92221 0.92798 0.93731 0.92577 0.93065 0.91679 0.92659 0.93004 0.92277 0.92684 0.95935 0.92403 0.94003 0.89251 0.96340 0.93245 0.92618 0.93497 0.92816 0.95762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.95 37.15 0.33 -1.42 16 2 C -0.10 -1.02 2.78 -90.62 -0.25 -1.27 16 3 C -0.15 -1.37 9.19 37.16 0.34 -1.03 16 4 C -0.11 -1.21 4.15 -26.73 -0.11 -1.32 16 5 C -0.09 -1.09 2.20 -90.62 -0.20 -1.28 16 6 H 0.09 1.38 5.82 -51.93 -0.30 1.07 16 7 C -0.14 -1.60 8.71 37.15 0.32 -1.27 16 8 C -0.11 -1.34 3.97 -26.73 -0.11 -1.44 16 9 C 0.08 1.08 2.22 -67.71 -0.15 0.93 16 10 H 0.08 1.03 6.28 -51.93 -0.33 0.70 16 11 C -0.19 -2.54 8.50 37.16 0.32 -2.22 16 12 N -0.52 -8.95 4.01 -226.70 -0.91 -9.86 16 13 C 0.05 1.03 4.64 -3.84 -0.02 1.01 16 14 C -0.10 -2.41 5.12 -26.65 -0.14 -2.55 16 15 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 16 C -0.51 -14.07 8.56 -34.44 -0.29 -14.36 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 19 N -0.89 -25.57 11.37 55.43 0.63 -24.94 16 20 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 C -0.11 -2.23 5.32 -26.65 -0.14 -2.37 16 25 C 0.06 1.07 5.02 -3.83 -0.02 1.05 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.85 6.46 -51.93 -0.34 0.51 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.71 6.34 -51.93 -0.33 0.38 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.66 6.46 -51.93 -0.34 0.32 16 37 H 0.05 0.54 6.46 -51.93 -0.34 0.21 16 38 H 0.06 0.90 6.05 -51.93 -0.31 0.59 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.87 6.52 -51.93 -0.34 0.53 16 42 H 0.05 0.78 6.65 -51.93 -0.35 0.43 16 43 H 0.02 0.45 6.62 -51.93 -0.34 0.11 16 44 H 0.06 1.05 5.93 -51.93 -0.31 0.74 16 45 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.09 2.36 6.17 -51.93 -0.32 2.04 16 47 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 49 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 50 H 0.05 0.97 8.14 -51.92 -0.42 0.54 16 51 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 52 H 0.02 0.45 6.73 -51.93 -0.35 0.10 16 LS Contribution 373.70 15.07 5.63 5.63 Total: -1.00 -27.27 373.70 -10.24 -37.52 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -10.16 Total: 0.15 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: -0.41 Total: -24.94 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: -0.28 Total: -34.80 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -27.27 -10.24 -37.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258068751.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.954 kcal (2) G-P(sol) polarization free energy of solvation -27.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds