Wall clock time and date at job start Tue Mar 31 2020 05:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47549 * 2 1 4 4 C 1.53001 * 109.47549 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.47069 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46977 * 178.09872 * 5 4 3 7 7 H 1.09002 * 109.47536 * 53.69609 * 6 5 4 8 8 C 1.53002 * 109.47239 * 173.70386 * 6 5 4 9 9 C 1.52998 * 109.47041 * 185.96606 * 8 6 5 10 10 C 1.53003 * 109.47019 * 184.19574 * 9 8 6 11 11 N 1.46906 * 109.46951 * 293.69702 * 6 5 4 12 12 C 1.46896 * 110.99578 * 98.01385 * 11 6 5 13 13 H 1.09003 * 109.41653 * 331.20847 * 12 11 6 14 14 C 1.52958 * 109.41211 * 90.99892 * 12 11 6 15 15 C 1.53231 * 109.40276 * 183.70084 * 14 12 11 16 16 C 1.51272 * 108.54040 * 305.37052 * 15 14 12 17 17 C 1.37873 * 120.85239 * 231.32612 * 16 15 14 18 18 N 1.31511 * 120.00176 * 9.63527 * 17 16 15 19 19 Si 1.86797 * 119.99947 * 189.63321 * 17 16 15 20 20 H 1.48502 * 109.47326 * 2.29015 * 19 17 16 21 21 H 1.48496 * 109.47288 * 122.29363 * 19 17 16 22 22 H 1.48509 * 109.47103 * 242.28992 * 19 17 16 23 23 C 1.51272 * 118.29626 * 51.34727 * 16 15 14 24 24 C 1.52964 * 109.41241 * 211.35159 * 12 11 6 25 25 H 1.09000 * 109.46846 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46759 * 300.00223 * 1 2 3 27 27 H 1.08994 * 109.47242 * 59.99734 * 1 2 3 28 28 H 1.09001 * 109.47121 * 239.99374 * 2 1 3 29 29 H 1.09007 * 109.47289 * 119.99891 * 2 1 3 30 30 H 1.09002 * 109.46774 * 59.99942 * 3 2 1 31 31 H 1.09007 * 109.46737 * 300.00229 * 3 2 1 32 32 H 1.09000 * 109.46759 * 59.99776 * 4 3 2 33 33 H 1.08997 * 109.46787 * 300.00496 * 4 3 2 34 34 H 1.08996 * 109.47263 * 58.09344 * 5 4 3 35 35 H 1.09002 * 109.47269 * 298.09423 * 5 4 3 36 36 H 1.09004 * 109.46736 * 305.96230 * 8 6 5 37 37 H 1.08993 * 109.47426 * 65.95878 * 8 6 5 38 38 H 1.08997 * 109.46971 * 304.19167 * 9 8 6 39 39 H 1.08995 * 109.47609 * 64.19468 * 9 8 6 40 40 H 1.09006 * 109.46912 * 299.99853 * 10 9 8 41 41 H 1.08995 * 109.47017 * 59.99531 * 10 9 8 42 42 H 1.08994 * 109.47146 * 179.97438 * 10 9 8 43 43 H 1.00893 * 110.99845 * 221.96995 * 11 6 5 44 44 H 1.08994 * 109.48375 * 303.68207 * 14 12 11 45 45 H 1.09001 * 109.48094 * 63.72309 * 14 12 11 46 46 H 1.09006 * 109.62806 * 185.65885 * 15 14 12 47 47 H 1.08999 * 109.78796 * 65.18302 * 15 14 12 48 48 H 0.97003 * 120.00334 * 179.97438 * 18 17 16 49 49 H 1.08997 * 109.62719 * 188.93666 * 23 16 15 50 50 H 1.09000 * 109.62461 * 68.37106 * 23 16 15 51 51 H 1.09004 * 109.48137 * 296.27630 * 24 12 11 52 52 H 1.08997 * 109.48219 * 56.30587 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6093 2.8851 0.0485 7 1 5.9987 2.2672 -0.7606 8 6 6.1244 4.3171 -0.1101 9 6 7.6510 4.3017 -0.2109 10 6 8.1731 5.7389 -0.2643 11 7 6.0584 2.3434 1.3381 12 6 6.4184 0.9244 1.2162 13 1 5.8310 0.4688 0.4190 14 6 7.9062 0.8043 0.8819 15 6 8.2614 -0.6702 0.6638 16 6 7.8316 -1.4541 1.8840 17 6 8.7105 -2.2998 2.5269 18 7 9.9851 -2.2932 2.2033 19 14 8.0907 -3.4549 3.8576 20 1 6.6192 -3.3091 3.9939 21 1 8.4172 -4.8558 3.4886 22 1 8.7432 -3.1183 5.1486 23 6 6.4125 -1.2867 2.3806 24 6 6.1242 0.2101 2.5364 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9338 0.9284 -0.8891 33 1 3.9330 0.9287 0.8908 34 1 3.6888 3.4090 0.8719 35 1 3.7453 3.3882 -0.9070 36 1 5.7049 4.7558 -1.0155 37 1 5.8232 4.9094 0.7538 38 1 8.0675 3.7960 0.6602 39 1 7.9501 3.7727 -1.1157 40 1 7.7565 6.2447 -1.1355 41 1 7.8739 6.2680 0.6404 42 1 9.2606 5.7280 -0.3357 43 1 6.8278 2.8812 1.7079 44 1 8.1215 1.3682 -0.0257 45 1 8.4974 1.2026 1.7065 46 1 9.3379 -0.7708 0.5246 47 1 7.7417 -1.0487 -0.2163 48 1 10.6036 -2.8879 2.6558 49 1 6.3009 -1.7834 3.3444 50 1 5.7190 -1.7201 1.6599 51 1 6.7576 0.6224 3.3219 52 1 5.0767 0.3531 2.8015 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258662021.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:06 Heat of formation + Delta-G solvation = -61.929568 kcal Electronic energy + Delta-G solvation = -23685.221049 eV Core-core repulsion = 20681.960472 eV Total energy + Delta-G solvation = -3003.260577 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -38.65278 -36.20814 -35.50914 -33.35649 -32.28793 -30.86152 -29.47058 -28.86528 -26.21092 -25.97724 -22.82484 -21.53361 -21.40934 -21.12879 -20.66978 -20.01290 -19.03986 -16.25051 -15.93343 -15.34153 -14.85663 -14.35820 -14.32371 -14.06212 -13.76086 -13.33025 -13.15448 -13.00048 -12.77891 -12.70024 -12.36872 -12.16253 -11.99536 -11.89752 -11.65899 -11.48139 -11.31547 -11.12673 -10.94161 -10.84062 -10.82254 -10.78010 -10.62953 -10.50696 -10.39767 -10.21109 -9.98569 -9.87300 -9.71786 -9.32533 -8.86048 -8.70744 -8.36355 -7.65375 -6.06228 -3.93647 3.28923 3.39107 3.41126 4.42945 4.63928 4.72524 5.02198 5.03241 5.04034 5.09681 5.18785 5.21839 5.39403 5.46182 5.52542 5.59289 5.69132 5.73297 5.79400 5.81247 5.85179 5.88510 5.97395 6.01075 6.04783 6.08769 6.13594 6.19000 6.23779 6.28081 6.32070 6.34856 6.36899 6.43920 6.56709 6.64150 6.68126 6.80760 6.88385 6.96785 7.10424 7.13114 7.24744 7.51800 7.70385 7.76016 7.80430 7.86776 8.04846 8.45816 9.03196 9.60411 11.03495 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.010221 B = 0.005883 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.675153 B = 4758.192305 C = 7110.870209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.116 4.116 4 C -0.123 4.123 5 C -0.101 4.101 6 C 0.085 3.915 7 H 0.047 0.953 8 C -0.124 4.124 9 C -0.130 4.130 10 C -0.149 4.149 11 N -0.685 5.685 12 C 0.098 3.902 13 H 0.066 0.934 14 C -0.131 4.131 15 C 0.012 3.988 16 C -0.484 4.484 17 C 0.075 3.925 18 N -0.891 5.891 19 Si 0.879 3.121 20 H -0.257 1.257 21 H -0.286 1.286 22 H -0.285 1.285 23 C -0.022 4.022 24 C -0.090 4.090 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.335 0.665 44 H 0.024 0.976 45 H 0.049 0.951 46 H 0.053 0.947 47 H -0.001 1.001 48 H 0.262 0.738 49 H 0.035 0.965 50 H 0.012 0.988 51 H 0.047 0.953 52 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.438 11.375 -4.818 16.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.153 4.153 4 C -0.160 4.160 5 C -0.139 4.139 6 C -0.025 4.025 7 H 0.065 0.935 8 C -0.162 4.162 9 C -0.168 4.168 10 C -0.207 4.207 11 N -0.317 5.317 12 C -0.011 4.011 13 H 0.085 0.915 14 C -0.170 4.170 15 C -0.026 4.026 16 C -0.503 4.503 17 C -0.127 4.127 18 N -0.529 5.529 19 Si 0.707 3.293 20 H -0.182 1.182 21 H -0.213 1.213 22 H -0.211 1.211 23 C -0.060 4.060 24 C -0.128 4.128 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.154 0.846 44 H 0.042 0.958 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.018 0.982 48 H 0.072 0.928 49 H 0.054 0.946 50 H 0.030 0.970 51 H 0.066 0.934 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -11.903 11.176 -4.556 16.952 hybrid contribution 0.760 -0.597 0.209 0.989 sum -11.143 10.580 -4.347 15.969 Atomic orbital electron populations 1.21774 0.96402 1.01270 1.01390 1.21549 0.95265 0.97371 1.02295 1.21594 0.96228 0.96274 1.01211 1.21686 0.94314 0.97221 1.02793 1.21567 0.94832 0.96810 1.00714 1.21571 0.95046 0.94044 0.91846 0.93455 1.21877 0.95288 0.97124 1.01933 1.21613 0.95744 0.97019 1.02404 1.21748 1.00737 0.96753 1.01415 1.60805 1.41973 1.04174 1.24722 1.21608 0.95094 0.86050 0.98358 0.91549 1.22240 0.95868 1.00787 0.98125 1.19324 0.98758 0.89639 0.94857 1.20048 0.94481 1.23927 1.11851 1.24837 0.94408 0.96773 0.96708 1.69878 1.02216 1.37955 1.42821 0.86779 0.79856 0.80876 0.81778 1.18201 1.21266 1.21090 1.19895 0.96747 0.92305 0.97084 1.21492 0.98011 0.97481 0.95829 0.93034 0.92953 0.93117 0.92210 0.91762 0.92361 0.92853 0.92909 0.90142 0.91788 0.93069 0.91955 0.91489 0.91564 0.92146 0.93102 0.92846 0.92898 0.84609 0.95760 0.93238 0.92838 0.98226 0.92815 0.94628 0.96999 0.93430 0.94558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 37.16 0.37 -1.10 16 2 C -0.13 -1.46 5.93 -26.73 -0.16 -1.62 16 3 C -0.12 -1.33 5.21 -26.73 -0.14 -1.47 16 4 C -0.12 -1.64 4.11 -26.73 -0.11 -1.75 16 5 C -0.10 -1.27 4.88 -26.73 -0.13 -1.40 16 6 C 0.09 1.16 2.11 -67.71 -0.14 1.02 16 7 H 0.05 0.72 7.53 -51.93 -0.39 0.33 16 8 C -0.12 -1.44 4.68 -26.73 -0.13 -1.56 16 9 C -0.13 -1.55 5.84 -26.73 -0.16 -1.70 16 10 C -0.15 -1.51 9.91 37.16 0.37 -1.14 16 11 N -0.69 -10.78 5.90 -99.78 -0.59 -11.37 16 12 C 0.10 1.84 1.19 -67.75 -0.08 1.76 16 13 H 0.07 1.30 6.00 -51.93 -0.31 0.99 16 14 C -0.13 -2.76 5.20 -26.63 -0.14 -2.90 16 15 C 0.01 0.31 5.99 -27.48 -0.16 0.14 16 16 C -0.48 -12.80 5.49 -98.92 -0.54 -13.35 16 17 C 0.07 2.06 5.45 -17.82 -0.10 1.97 16 18 N -0.89 -25.89 12.75 55.43 0.71 -25.19 16 19 Si 0.88 21.11 27.83 -169.99 -4.73 16.38 16 20 H -0.26 -5.93 5.76 56.52 0.33 -5.60 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 C -0.02 -0.52 5.53 -27.48 -0.15 -0.67 16 24 C -0.09 -1.85 5.46 -26.63 -0.15 -2.00 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.27 5.92 -51.93 -0.31 0.96 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.88 6.55 -51.93 -0.34 0.54 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.33 5.22 6.19 -39.30 -0.24 4.98 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.05 1.48 7.06 -51.93 -0.37 1.11 16 47 H 0.00 -0.02 8.14 -51.93 -0.42 -0.44 16 48 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 49 H 0.04 0.84 4.63 -51.93 -0.24 0.60 16 50 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 51 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 52 H 0.04 0.70 7.79 -51.93 -0.40 0.29 16 LS Contribution 384.30 15.07 5.79 5.79 Total: -1.00 -27.02 384.30 -11.06 -38.09 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -10.69 Total: 2.08 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: -1.55 Total: -25.78 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.12 Total: -36.56 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.73 Total: 16.38 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -27.02 -11.06 -38.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258662021.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.844 kcal (2) G-P(sol) polarization free energy of solvation -27.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds