Wall clock time and date at job start Tue Mar 31 2020 05:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47549 * 2 1 4 4 C 1.53001 * 109.47549 * 179.97438 * 3 2 1 5 5 C 1.52992 * 109.47069 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46977 * 178.09872 * 5 4 3 7 7 H 1.09002 * 109.47536 * 53.69609 * 6 5 4 8 8 C 1.53002 * 109.47239 * 173.70386 * 6 5 4 9 9 C 1.52998 * 109.47041 * 185.96606 * 8 6 5 10 10 C 1.53003 * 109.47019 * 184.19574 * 9 8 6 11 11 N 1.46906 * 109.46951 * 293.69702 * 6 5 4 12 12 C 1.46896 * 110.99578 * 98.01385 * 11 6 5 13 13 H 1.09003 * 109.41653 * 331.20847 * 12 11 6 14 14 C 1.52958 * 109.41211 * 90.99892 * 12 11 6 15 15 C 1.53231 * 109.40276 * 183.70084 * 14 12 11 16 16 C 1.51272 * 108.54040 * 305.37052 * 15 14 12 17 17 C 1.37873 * 120.85239 * 231.32612 * 16 15 14 18 18 N 1.31511 * 120.00176 * 9.63527 * 17 16 15 19 19 Si 1.86797 * 119.99947 * 189.63321 * 17 16 15 20 20 H 1.48502 * 109.47326 * 2.29015 * 19 17 16 21 21 H 1.48496 * 109.47288 * 122.29363 * 19 17 16 22 22 H 1.48509 * 109.47103 * 242.28992 * 19 17 16 23 23 C 1.51272 * 118.29626 * 51.34727 * 16 15 14 24 24 C 1.52964 * 109.41241 * 211.35159 * 12 11 6 25 25 H 1.09000 * 109.46846 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46759 * 300.00223 * 1 2 3 27 27 H 1.08994 * 109.47242 * 59.99734 * 1 2 3 28 28 H 1.09001 * 109.47121 * 239.99374 * 2 1 3 29 29 H 1.09007 * 109.47289 * 119.99891 * 2 1 3 30 30 H 1.09002 * 109.46774 * 59.99942 * 3 2 1 31 31 H 1.09007 * 109.46737 * 300.00229 * 3 2 1 32 32 H 1.09000 * 109.46759 * 59.99776 * 4 3 2 33 33 H 1.08997 * 109.46787 * 300.00496 * 4 3 2 34 34 H 1.08996 * 109.47263 * 58.09344 * 5 4 3 35 35 H 1.09002 * 109.47269 * 298.09423 * 5 4 3 36 36 H 1.09004 * 109.46736 * 305.96230 * 8 6 5 37 37 H 1.08993 * 109.47426 * 65.95878 * 8 6 5 38 38 H 1.08997 * 109.46971 * 304.19167 * 9 8 6 39 39 H 1.08995 * 109.47609 * 64.19468 * 9 8 6 40 40 H 1.09006 * 109.46912 * 299.99853 * 10 9 8 41 41 H 1.08995 * 109.47017 * 59.99531 * 10 9 8 42 42 H 1.08994 * 109.47146 * 179.97438 * 10 9 8 43 43 H 1.00893 * 110.99845 * 221.96995 * 11 6 5 44 44 H 1.08994 * 109.48375 * 303.68207 * 14 12 11 45 45 H 1.09001 * 109.48094 * 63.72309 * 14 12 11 46 46 H 1.09006 * 109.62806 * 185.65885 * 15 14 12 47 47 H 1.08999 * 109.78796 * 65.18302 * 15 14 12 48 48 H 0.97003 * 120.00334 * 179.97438 * 18 17 16 49 49 H 1.08997 * 109.62719 * 188.93666 * 23 16 15 50 50 H 1.09000 * 109.62461 * 68.37106 * 23 16 15 51 51 H 1.09004 * 109.48137 * 296.27630 * 24 12 11 52 52 H 1.08997 * 109.48219 * 56.30587 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6093 2.8851 0.0485 7 1 5.9987 2.2672 -0.7606 8 6 6.1244 4.3171 -0.1101 9 6 7.6510 4.3017 -0.2109 10 6 8.1731 5.7389 -0.2643 11 7 6.0584 2.3434 1.3381 12 6 6.4184 0.9244 1.2162 13 1 5.8310 0.4688 0.4190 14 6 7.9062 0.8043 0.8819 15 6 8.2614 -0.6702 0.6638 16 6 7.8316 -1.4541 1.8840 17 6 8.7105 -2.2998 2.5269 18 7 9.9851 -2.2932 2.2033 19 14 8.0907 -3.4549 3.8576 20 1 6.6192 -3.3091 3.9939 21 1 8.4172 -4.8558 3.4886 22 1 8.7432 -3.1183 5.1486 23 6 6.4125 -1.2867 2.3806 24 6 6.1242 0.2101 2.5364 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9338 0.9284 -0.8891 33 1 3.9330 0.9287 0.8908 34 1 3.6888 3.4090 0.8719 35 1 3.7453 3.3882 -0.9070 36 1 5.7049 4.7558 -1.0155 37 1 5.8232 4.9094 0.7538 38 1 8.0675 3.7960 0.6602 39 1 7.9501 3.7727 -1.1157 40 1 7.7565 6.2447 -1.1355 41 1 7.8739 6.2680 0.6404 42 1 9.2606 5.7280 -0.3357 43 1 6.8278 2.8812 1.7079 44 1 8.1215 1.3682 -0.0257 45 1 8.4974 1.2026 1.7065 46 1 9.3379 -0.7708 0.5246 47 1 7.7417 -1.0487 -0.2163 48 1 10.6036 -2.8879 2.6558 49 1 6.3009 -1.7834 3.3444 50 1 5.7190 -1.7201 1.6599 51 1 6.7576 0.6224 3.3219 52 1 5.0767 0.3531 2.8015 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258662021.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:05 Heat of formation + Delta-G solvation = -74.059004 kcal Electronic energy + Delta-G solvation = -23685.747021 eV Core-core repulsion = 20681.960472 eV Total energy + Delta-G solvation = -3003.786549 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.00275 -37.69401 -36.50717 -34.77153 -33.69167 -32.28559 -31.28309 -30.16500 -27.63987 -27.04411 -23.90176 -23.35989 -23.13922 -22.07124 -21.77079 -21.12177 -20.67547 -18.09899 -17.08283 -16.49152 -16.34539 -16.02176 -15.46050 -15.14492 -15.00327 -14.76429 -14.48693 -14.29002 -14.14077 -13.91625 -13.87561 -13.58289 -13.50565 -12.99549 -12.83553 -12.72523 -12.65956 -12.57752 -12.37522 -12.31328 -11.99969 -11.84736 -11.82966 -11.72051 -11.58120 -11.50491 -11.39639 -11.20923 -11.20095 -10.97424 -10.68398 -10.62801 -10.40977 -9.07343 -8.16561 -6.07718 1.37001 1.41832 1.51173 2.42100 3.08568 3.40947 3.73854 4.03721 4.10674 4.13814 4.16132 4.19872 4.30019 4.34817 4.44753 4.53296 4.61165 4.64307 4.68650 4.78255 4.81504 4.85027 4.88667 4.90037 4.96397 5.01173 5.04709 5.09347 5.11239 5.13721 5.17222 5.19705 5.21803 5.30185 5.32388 5.34158 5.37067 5.40415 5.45074 5.47269 5.51632 5.60556 5.62187 5.64227 5.69991 5.78826 5.87931 6.37888 6.38879 6.69382 6.97617 7.48784 8.94608 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.010221 B = 0.005883 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.675153 B = 4758.192305 C = 7110.870209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C -0.109 4.109 4 C -0.121 4.121 5 C -0.095 4.095 6 C 0.083 3.917 7 H 0.031 0.969 8 C -0.115 4.115 9 C -0.131 4.131 10 C -0.146 4.146 11 N -0.678 5.678 12 C 0.114 3.886 13 H 0.062 0.938 14 C -0.117 4.117 15 C 0.008 3.992 16 C -0.494 4.494 17 C 0.019 3.981 18 N -0.933 5.933 19 Si 0.934 3.066 20 H -0.239 1.239 21 H -0.288 1.288 22 H -0.284 1.284 23 C -0.023 4.023 24 C -0.083 4.083 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.042 0.958 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.048 0.952 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.050 0.950 43 H 0.337 0.663 44 H 0.038 0.962 45 H 0.035 0.965 46 H 0.018 0.982 47 H -0.005 1.005 48 H 0.261 0.739 49 H 0.036 0.964 50 H 0.015 0.985 51 H 0.037 0.963 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.860 13.042 -4.805 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C -0.147 4.147 4 C -0.158 4.158 5 C -0.133 4.133 6 C -0.026 4.026 7 H 0.049 0.951 8 C -0.153 4.153 9 C -0.169 4.169 10 C -0.203 4.203 11 N -0.309 5.309 12 C 0.004 3.996 13 H 0.080 0.920 14 C -0.156 4.156 15 C -0.030 4.030 16 C -0.514 4.514 17 C -0.179 4.179 18 N -0.573 5.573 19 Si 0.760 3.240 20 H -0.163 1.163 21 H -0.214 1.214 22 H -0.210 1.210 23 C -0.061 4.061 24 C -0.122 4.122 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.156 0.844 44 H 0.056 0.944 45 H 0.053 0.947 46 H 0.037 0.963 47 H 0.013 0.987 48 H 0.070 0.930 49 H 0.054 0.946 50 H 0.033 0.967 51 H 0.056 0.944 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.350 12.859 -4.545 19.797 hybrid contribution 1.532 -1.096 0.117 1.887 sum -12.818 11.764 -4.428 17.953 Atomic orbital electron populations 1.21747 0.94920 1.01779 1.02084 1.21559 0.96617 0.97224 1.01336 1.21539 0.94724 0.96404 1.01991 1.21633 0.95724 0.97451 1.01032 1.21528 0.93612 0.96341 1.01796 1.21669 0.95978 0.95018 0.89969 0.95071 1.21814 0.94776 0.95611 1.03110 1.21598 0.96187 0.98015 1.01059 1.21715 1.00696 0.95535 1.02335 1.60771 1.41615 1.02354 1.26149 1.21303 0.92982 0.88054 0.97219 0.91964 1.22065 0.97518 0.97828 0.98230 1.19301 0.96488 0.92537 0.94648 1.20640 0.95907 1.23177 1.11637 1.25632 0.94559 0.98442 0.99247 1.70016 1.03464 1.39246 1.44614 0.85894 0.80300 0.78682 0.79132 1.16305 1.21403 1.21038 1.19908 0.94844 0.94457 0.96903 1.21380 0.98887 0.95527 0.96378 0.92693 0.92515 0.92141 0.92735 0.93223 0.92009 0.91497 0.93942 0.92610 0.91522 0.91077 0.90171 0.90748 0.93327 0.93154 0.91867 0.92169 0.93039 0.84351 0.94372 0.94666 0.96293 0.98672 0.93003 0.94593 0.96693 0.94412 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.91 71.98 0.71 -1.86 16 2 C -0.13 -2.78 5.93 30.59 0.18 -2.60 16 3 C -0.11 -2.28 5.21 30.59 0.16 -2.12 16 4 C -0.12 -3.04 4.11 30.59 0.13 -2.91 16 5 C -0.09 -2.13 4.88 30.59 0.15 -1.98 16 6 C 0.08 2.11 2.11 44.92 0.09 2.21 16 7 H 0.03 0.91 7.53 -2.39 -0.02 0.89 16 8 C -0.12 -2.36 4.68 30.59 0.14 -2.22 16 9 C -0.13 -2.91 5.84 30.59 0.18 -2.73 16 10 C -0.15 -2.64 9.91 71.98 0.71 -1.93 16 11 N -0.68 -20.34 5.90 -469.58 -2.77 -23.11 16 12 C 0.11 4.23 1.19 44.89 0.05 4.28 16 13 H 0.06 2.40 6.00 -2.39 -0.01 2.38 16 14 C -0.12 -4.99 5.20 30.66 0.16 -4.83 16 15 C 0.01 0.43 5.99 30.11 0.18 0.61 16 16 C -0.49 -26.53 5.49 -16.17 -0.09 -26.62 16 17 C 0.02 1.06 5.45 84.65 0.46 1.52 16 18 N -0.93 -56.09 12.75 21.45 0.27 -55.81 16 19 Si 0.93 43.66 27.83 68.60 1.91 45.57 16 20 H -0.24 -10.38 5.76 99.48 0.57 -9.81 16 21 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 22 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 23 C -0.02 -1.07 5.53 30.11 0.17 -0.90 16 24 C -0.08 -3.35 5.46 30.66 0.17 -3.18 16 25 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 1.68 5.92 -2.39 -0.01 1.66 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.05 1.24 6.55 -2.39 -0.02 1.23 16 39 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.34 10.07 6.19 -89.70 -0.56 9.51 16 44 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.02 1.08 7.06 -2.38 -0.02 1.06 16 47 H -0.01 -0.26 8.14 -2.39 -0.02 -0.28 16 48 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 49 H 0.04 1.64 4.63 -2.39 -0.01 1.63 16 50 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 52 H 0.05 2.02 7.79 -2.39 -0.02 2.01 16 Total: -1.00 -58.89 384.30 3.12 -55.78 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.14 Total: 22.83 kcal Atomic # 6 Polarization: -48.81 SS G_CDS: 3.56 Total: -45.26 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -2.50 Total: -78.92 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.91 Total: 45.57 kcal Total: -58.89 3.12 -55.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258662021.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.280 kcal (2) G-P(sol) polarization free energy of solvation -58.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds