Wall clock time and date at job start Tue Mar 31 2020 05:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47172 * 2 1 4 4 C 1.53004 * 109.46737 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.46819 * 183.75525 * 4 3 2 6 6 C 1.53003 * 109.46909 * 175.53654 * 5 4 3 7 7 H 1.09002 * 109.46887 * 301.34445 * 6 5 4 8 8 C 1.53002 * 109.46859 * 181.34171 * 6 5 4 9 9 C 1.53000 * 109.46742 * 163.69505 * 8 6 5 10 10 C 1.53005 * 109.46903 * 173.77647 * 9 8 6 11 11 N 1.46894 * 109.46997 * 61.34208 * 6 5 4 12 12 C 1.46907 * 111.00282 * 73.04452 * 11 6 5 13 13 C 1.50698 * 110.01047 * 311.98987 * 12 11 6 14 14 H 1.07999 * 119.99939 * 113.04542 * 13 12 11 15 15 C 1.37885 * 120.00127 * 293.03817 * 13 12 11 16 16 N 1.31510 * 119.99698 * 6.79076 * 15 13 12 17 17 Si 1.86796 * 120.00072 * 186.78427 * 15 13 12 18 18 H 1.48504 * 109.46928 * 91.85178 * 17 15 13 19 19 H 1.48502 * 109.47063 * 211.84971 * 17 15 13 20 20 H 1.48502 * 109.47394 * 331.85285 * 17 15 13 21 21 C 1.54264 * 110.03085 * 190.59990 * 12 11 6 22 22 C 1.54963 * 104.15852 * 217.13183 * 21 12 11 23 23 C 1.54895 * 102.77800 * 37.88882 * 22 21 12 24 24 C 1.53872 * 110.03379 * 73.37753 * 12 11 6 25 25 H 1.08996 * 109.47109 * 300.00393 * 1 2 3 26 26 H 1.08999 * 109.46196 * 60.00108 * 1 2 3 27 27 H 1.08993 * 109.47058 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47109 * 239.99607 * 2 1 3 29 29 H 1.09008 * 109.46398 * 120.00053 * 2 1 3 30 30 H 1.09006 * 109.47278 * 59.99818 * 3 2 1 31 31 H 1.08994 * 109.47593 * 299.99583 * 3 2 1 32 32 H 1.08997 * 109.46868 * 63.75708 * 4 3 2 33 33 H 1.08999 * 109.47503 * 303.74957 * 4 3 2 34 34 H 1.08998 * 109.47133 * 55.53226 * 5 4 3 35 35 H 1.09003 * 109.46727 * 295.53422 * 5 4 3 36 36 H 1.09003 * 109.47070 * 43.69932 * 8 6 5 37 37 H 1.08993 * 109.47341 * 283.69674 * 8 6 5 38 38 H 1.08994 * 109.47112 * 53.77243 * 9 8 6 39 39 H 1.08997 * 109.47235 * 293.77141 * 9 8 6 40 40 H 1.09002 * 109.47082 * 180.02562 * 10 9 8 41 41 H 1.08997 * 109.46761 * 299.99783 * 10 9 8 42 42 H 1.08993 * 109.47072 * 59.99713 * 10 9 8 43 43 H 1.00910 * 110.99743 * 196.99213 * 11 6 5 44 44 H 0.97003 * 119.99980 * 185.05066 * 16 15 13 45 45 H 1.09000 * 110.49108 * 335.77724 * 21 12 11 46 46 H 1.09004 * 110.48567 * 98.42305 * 21 12 11 47 47 H 1.09001 * 110.72039 * 279.57514 * 22 21 12 48 48 H 1.09000 * 110.76916 * 156.22449 * 22 21 12 49 49 H 1.08997 * 110.48933 * 203.40907 * 23 22 21 50 50 H 1.09002 * 110.48334 * 80.76003 * 23 22 21 51 51 H 1.08998 * 110.03107 * 238.57284 * 24 12 11 52 52 H 1.09007 * 110.03184 * 0.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 6 4.0801 2.8818 0.0951 6 6 5.6060 2.8758 0.2079 7 1 5.9030 2.3058 1.0882 8 6 6.1135 4.3135 0.3360 9 6 7.5549 4.3017 0.8490 10 6 8.1146 5.7255 0.8302 11 7 6.1833 2.2580 -0.9932 12 6 6.0703 3.1536 -2.1522 13 6 4.6678 3.6961 -2.2499 14 1 4.4833 4.7480 -2.0893 15 6 3.6200 2.8495 -2.5444 16 7 3.8215 1.5515 -2.6084 17 14 1.9145 3.5463 -2.8525 18 1 1.7391 3.8018 -4.3049 19 1 0.8916 2.5722 -2.3942 20 1 1.7569 4.8189 -2.1035 21 6 6.4343 2.3939 -3.4446 22 6 7.1908 3.4416 -4.2998 23 6 8.0167 4.2154 -3.2422 24 6 7.0755 4.3115 -2.0236 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 1.6767 1.9563 0.8900 31 1 1.6769 1.9563 -0.8899 32 1 3.9338 0.9878 -0.9209 33 1 3.9331 0.8715 0.8553 34 1 3.6526 3.3617 0.9754 35 1 3.7840 3.4315 -0.7983 36 1 5.4828 4.8603 1.0370 37 1 6.0788 4.7993 -0.6390 38 1 8.1633 3.6635 0.2083 39 1 7.5744 3.9171 1.8687 40 1 9.1416 5.7170 1.1952 41 1 8.0950 6.1101 -0.1895 42 1 7.5061 6.3636 1.4709 43 1 7.1432 1.9895 -0.8360 44 1 3.1031 0.9623 -2.8870 45 1 7.0817 1.5464 -3.2195 46 1 5.5324 2.0606 -3.9580 47 1 6.4897 4.1064 -4.8044 48 1 7.8468 2.9521 -5.0196 49 1 8.2691 5.2104 -3.6085 50 1 8.9198 3.6623 -2.9841 51 1 6.5490 5.2658 -2.0327 52 1 7.6476 4.2086 -1.1014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258666800.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:55 Heat of formation + Delta-G solvation = 25.835448 kcal Electronic energy + Delta-G solvation = -25556.807463 eV Core-core repulsion = 22557.352662 eV Total energy + Delta-G solvation = -2999.454801 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.33012 -35.65686 -34.87227 -33.36486 -31.79431 -30.40160 -27.84412 -27.54440 -26.74383 -25.52798 -23.73686 -21.98454 -20.63846 -19.93837 -19.41235 -19.01005 -18.58929 -16.13958 -15.42967 -15.16197 -14.74194 -14.10994 -13.95995 -13.57165 -13.43487 -13.18336 -12.74569 -12.55782 -12.38507 -12.33590 -12.13468 -11.76221 -11.45279 -11.15002 -11.09257 -10.97318 -10.86967 -10.58924 -10.50657 -10.43574 -10.21490 -10.15504 -10.03334 -9.82890 -9.77414 -9.57676 -9.43861 -9.25458 -9.09505 -8.90787 -8.85106 -8.71487 -7.54239 -6.67610 -5.94659 -3.82303 3.27164 3.34407 3.38963 4.37110 5.16881 5.37722 5.46080 5.57137 5.58874 5.63018 5.66362 5.78931 5.82150 5.83210 5.97305 6.16565 6.18135 6.20581 6.21737 6.34306 6.37392 6.41311 6.47621 6.51799 6.54644 6.57242 6.65968 6.72214 6.76917 6.80484 6.84069 6.86648 6.93689 6.96937 6.99779 7.03225 7.20846 7.30767 7.34441 7.39578 7.44693 7.54583 7.62275 7.76383 7.93853 8.26476 8.31213 8.64765 8.79050 8.95376 9.23151 9.53006 11.01137 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.016841 B = 0.007368 C = 0.006109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.231312 B = 3799.453816 C = 4582.463118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.121 4.121 4 C -0.134 4.134 5 C -0.151 4.151 6 C 0.125 3.875 7 H 0.032 0.968 8 C -0.183 4.183 9 C -0.125 4.125 10 C -0.150 4.150 11 N -0.646 5.646 12 C 0.244 3.756 13 C -0.501 4.501 14 H 0.054 0.946 15 C 0.085 3.915 16 N -0.821 5.821 17 Si 0.859 3.141 18 H -0.285 1.285 19 H -0.274 1.274 20 H -0.274 1.274 21 C -0.088 4.088 22 C -0.124 4.124 23 C -0.125 4.125 24 C -0.172 4.172 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.030 0.970 31 H 0.059 0.941 32 H 0.155 0.845 33 H 0.005 0.995 34 H -0.003 1.003 35 H 0.152 0.848 36 H 0.040 0.960 37 H 0.113 0.887 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.043 0.957 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.295 0.705 44 H 0.258 0.742 45 H 0.033 0.967 46 H 0.085 0.915 47 H 0.058 0.942 48 H 0.039 0.961 49 H 0.041 0.959 50 H 0.046 0.954 51 H 0.055 0.945 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.842 1.407 2.703 4.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.159 4.159 4 C -0.171 4.171 5 C -0.186 4.186 6 C 0.015 3.985 7 H 0.050 0.950 8 C -0.221 4.221 9 C -0.162 4.162 10 C -0.208 4.208 11 N -0.273 5.273 12 C 0.155 3.845 13 C -0.539 4.539 14 H 0.072 0.928 15 C -0.120 4.120 16 N -0.457 5.457 17 Si 0.688 3.312 18 H -0.212 1.212 19 H -0.200 1.200 20 H -0.199 1.199 21 C -0.127 4.127 22 C -0.162 4.162 23 C -0.163 4.163 24 C -0.211 4.211 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.172 0.828 33 H 0.024 0.976 34 H 0.016 0.984 35 H 0.169 0.831 36 H 0.059 0.941 37 H 0.131 0.869 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.111 0.889 44 H 0.069 0.931 45 H 0.052 0.948 46 H 0.104 0.896 47 H 0.077 0.923 48 H 0.058 0.942 49 H 0.060 0.940 50 H 0.064 0.936 51 H 0.073 0.927 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.146 0.842 2.604 3.478 hybrid contribution -0.345 1.127 0.453 1.263 sum 1.801 1.969 3.057 4.057 Atomic orbital electron populations 1.21802 0.97469 1.00390 1.01148 1.21477 0.94154 0.98626 1.01347 1.21753 0.99235 0.94750 1.00124 1.22416 0.91606 0.97918 1.05114 1.22984 0.93438 0.98729 1.03482 1.20989 0.96242 0.90098 0.91193 0.94951 1.23193 0.93484 1.01529 1.03904 1.21658 0.98207 0.96332 0.99994 1.21802 0.99605 0.97643 1.01725 1.60918 1.19064 1.43945 1.03410 1.19079 0.92308 0.85820 0.87288 1.20760 0.90968 0.93598 1.48590 0.92802 1.24671 0.97500 0.94737 0.95058 1.69702 1.32283 1.01584 1.42143 0.87294 0.86283 0.79435 0.78222 1.21211 1.20023 1.19875 1.22193 0.98971 0.94861 0.96671 1.22500 0.97920 0.98818 0.96990 1.22379 0.97878 0.98307 0.97712 1.23912 0.98346 1.01664 0.97163 0.93515 0.93213 0.93637 0.91896 0.93221 0.95109 0.92221 0.82850 0.97579 0.98421 0.83129 0.94110 0.86892 0.91895 0.93349 0.93769 0.92571 0.93308 0.88941 0.93081 0.94828 0.89642 0.92333 0.94188 0.94022 0.93552 0.92658 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.91 37.16 0.37 -2.00 16 2 C -0.12 -2.14 5.93 -26.73 -0.16 -2.30 16 3 C -0.12 -2.50 5.09 -26.73 -0.14 -2.64 16 4 C -0.13 -2.95 3.97 -26.72 -0.11 -3.06 16 5 C -0.15 -3.36 4.01 -26.73 -0.11 -3.47 16 6 C 0.13 2.58 2.48 -67.71 -0.17 2.41 16 7 H 0.03 0.67 8.04 -51.93 -0.42 0.25 16 8 C -0.18 -3.41 3.96 -26.73 -0.11 -3.51 16 9 C -0.12 -1.97 4.83 -26.73 -0.13 -2.10 16 10 C -0.15 -2.10 9.74 37.16 0.36 -1.74 16 11 N -0.65 -13.61 5.03 -93.08 -0.47 -14.08 16 12 C 0.24 5.18 0.40 -131.63 -0.05 5.13 16 13 C -0.50 -11.77 4.26 -34.44 -0.15 -11.92 16 14 H 0.05 1.33 7.09 -52.49 -0.37 0.95 16 15 C 0.08 2.01 2.27 -17.82 -0.04 1.97 16 16 N -0.82 -19.67 7.44 55.43 0.41 -19.26 16 17 Si 0.86 19.48 26.46 -169.99 -4.50 14.98 16 18 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.27 -6.17 6.09 56.52 0.34 -5.82 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 C -0.09 -1.90 5.59 -25.03 -0.14 -2.04 16 22 C -0.12 -2.34 6.91 -24.70 -0.17 -2.51 16 23 C -0.12 -2.19 6.83 -25.07 -0.17 -2.36 16 24 C -0.17 -3.26 3.72 -25.61 -0.10 -3.36 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 1.31 3.56 -51.93 -0.18 1.13 16 32 H 0.16 3.70 4.19 -53.51 -0.22 3.47 16 33 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 34 H 0.00 -0.06 8.12 -51.93 -0.42 -0.49 16 35 H 0.15 3.60 2.07 -67.96 -0.14 3.46 16 36 H 0.04 0.77 8.02 -51.93 -0.42 0.35 16 37 H 0.11 2.25 2.52 -54.98 -0.14 2.11 16 38 H 0.06 1.01 5.78 -51.93 -0.30 0.71 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.80 7.43 -51.93 -0.39 0.42 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.29 5.89 8.02 -39.29 -0.31 5.58 16 44 H 0.26 6.14 8.32 -40.82 -0.34 5.80 16 45 H 0.03 0.72 8.05 -51.93 -0.42 0.30 16 46 H 0.09 2.05 6.03 -51.93 -0.31 1.74 16 47 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 48 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 50 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 51 H 0.06 1.11 6.35 -51.93 -0.33 0.78 16 52 H 0.07 1.32 2.29 -51.93 -0.12 1.21 16 LS Contribution 348.99 15.07 5.26 5.26 Total: -1.00 -22.69 348.99 -9.90 -32.59 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: -9.61 Total: 14.01 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: -1.00 Total: -33.49 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: -0.06 Total: -33.34 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.50 Total: 14.98 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -22.69 -9.90 -32.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258666800.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.422 kcal (2) G-P(sol) polarization free energy of solvation -22.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds