Wall clock time and date at job start Tue Mar 31 2020 05:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47172 * 2 1 4 4 C 1.53004 * 109.46737 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.46819 * 183.75525 * 4 3 2 6 6 C 1.53003 * 109.46909 * 175.53654 * 5 4 3 7 7 H 1.09002 * 109.46887 * 301.34445 * 6 5 4 8 8 C 1.53002 * 109.46859 * 181.34171 * 6 5 4 9 9 C 1.53000 * 109.46742 * 163.69505 * 8 6 5 10 10 C 1.53005 * 109.46903 * 173.77647 * 9 8 6 11 11 N 1.46894 * 109.46997 * 61.34208 * 6 5 4 12 12 C 1.46907 * 111.00282 * 73.04452 * 11 6 5 13 13 C 1.50698 * 110.01047 * 311.98987 * 12 11 6 14 14 H 1.07999 * 119.99939 * 113.04542 * 13 12 11 15 15 C 1.37885 * 120.00127 * 293.03817 * 13 12 11 16 16 N 1.31510 * 119.99698 * 6.79076 * 15 13 12 17 17 Si 1.86796 * 120.00072 * 186.78427 * 15 13 12 18 18 H 1.48504 * 109.46928 * 91.85178 * 17 15 13 19 19 H 1.48502 * 109.47063 * 211.84971 * 17 15 13 20 20 H 1.48502 * 109.47394 * 331.85285 * 17 15 13 21 21 C 1.54264 * 110.03085 * 190.59990 * 12 11 6 22 22 C 1.54963 * 104.15852 * 217.13183 * 21 12 11 23 23 C 1.54895 * 102.77800 * 37.88882 * 22 21 12 24 24 C 1.53872 * 110.03379 * 73.37753 * 12 11 6 25 25 H 1.08996 * 109.47109 * 300.00393 * 1 2 3 26 26 H 1.08999 * 109.46196 * 60.00108 * 1 2 3 27 27 H 1.08993 * 109.47058 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47109 * 239.99607 * 2 1 3 29 29 H 1.09008 * 109.46398 * 120.00053 * 2 1 3 30 30 H 1.09006 * 109.47278 * 59.99818 * 3 2 1 31 31 H 1.08994 * 109.47593 * 299.99583 * 3 2 1 32 32 H 1.08997 * 109.46868 * 63.75708 * 4 3 2 33 33 H 1.08999 * 109.47503 * 303.74957 * 4 3 2 34 34 H 1.08998 * 109.47133 * 55.53226 * 5 4 3 35 35 H 1.09003 * 109.46727 * 295.53422 * 5 4 3 36 36 H 1.09003 * 109.47070 * 43.69932 * 8 6 5 37 37 H 1.08993 * 109.47341 * 283.69674 * 8 6 5 38 38 H 1.08994 * 109.47112 * 53.77243 * 9 8 6 39 39 H 1.08997 * 109.47235 * 293.77141 * 9 8 6 40 40 H 1.09002 * 109.47082 * 180.02562 * 10 9 8 41 41 H 1.08997 * 109.46761 * 299.99783 * 10 9 8 42 42 H 1.08993 * 109.47072 * 59.99713 * 10 9 8 43 43 H 1.00910 * 110.99743 * 196.99213 * 11 6 5 44 44 H 0.97003 * 119.99980 * 185.05066 * 16 15 13 45 45 H 1.09000 * 110.49108 * 335.77724 * 21 12 11 46 46 H 1.09004 * 110.48567 * 98.42305 * 21 12 11 47 47 H 1.09001 * 110.72039 * 279.57514 * 22 21 12 48 48 H 1.09000 * 110.76916 * 156.22449 * 22 21 12 49 49 H 1.08997 * 110.48933 * 203.40907 * 23 22 21 50 50 H 1.09002 * 110.48334 * 80.76003 * 23 22 21 51 51 H 1.08998 * 110.03107 * 238.57284 * 24 12 11 52 52 H 1.09007 * 110.03184 * 0.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 6 4.0801 2.8818 0.0951 6 6 5.6060 2.8758 0.2079 7 1 5.9030 2.3058 1.0882 8 6 6.1135 4.3135 0.3360 9 6 7.5549 4.3017 0.8490 10 6 8.1146 5.7255 0.8302 11 7 6.1833 2.2580 -0.9932 12 6 6.0703 3.1536 -2.1522 13 6 4.6678 3.6961 -2.2499 14 1 4.4833 4.7480 -2.0893 15 6 3.6200 2.8495 -2.5444 16 7 3.8215 1.5515 -2.6084 17 14 1.9145 3.5463 -2.8525 18 1 1.7391 3.8018 -4.3049 19 1 0.8916 2.5722 -2.3942 20 1 1.7569 4.8189 -2.1035 21 6 6.4343 2.3939 -3.4446 22 6 7.1908 3.4416 -4.2998 23 6 8.0167 4.2154 -3.2422 24 6 7.0755 4.3115 -2.0236 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8901 30 1 1.6767 1.9563 0.8900 31 1 1.6769 1.9563 -0.8899 32 1 3.9338 0.9878 -0.9209 33 1 3.9331 0.8715 0.8553 34 1 3.6526 3.3617 0.9754 35 1 3.7840 3.4315 -0.7983 36 1 5.4828 4.8603 1.0370 37 1 6.0788 4.7993 -0.6390 38 1 8.1633 3.6635 0.2083 39 1 7.5744 3.9171 1.8687 40 1 9.1416 5.7170 1.1952 41 1 8.0950 6.1101 -0.1895 42 1 7.5061 6.3636 1.4709 43 1 7.1432 1.9895 -0.8360 44 1 3.1031 0.9623 -2.8870 45 1 7.0817 1.5464 -3.2195 46 1 5.5324 2.0606 -3.9580 47 1 6.4897 4.1064 -4.8044 48 1 7.8468 2.9521 -5.0196 49 1 8.2691 5.2104 -3.6085 50 1 8.9198 3.6623 -2.9841 51 1 6.5490 5.2658 -2.0327 52 1 7.6476 4.2086 -1.1014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258666800.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:54 Heat of formation + Delta-G solvation = 17.027331 kcal Electronic energy + Delta-G solvation = -25557.189411 eV Core-core repulsion = 22557.352662 eV Total energy + Delta-G solvation = -2999.836749 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.95646 -37.27840 -36.36624 -34.92175 -33.41730 -31.99546 -29.34449 -29.13525 -28.49819 -26.96606 -25.40172 -23.38577 -22.08278 -21.56183 -20.93950 -20.71408 -20.27317 -17.88789 -17.07838 -16.87025 -16.30653 -15.80279 -15.44388 -14.99354 -14.93138 -14.63191 -14.26227 -14.14938 -13.94087 -13.78918 -13.65223 -13.35368 -12.88316 -12.76271 -12.62164 -12.52242 -12.41860 -12.28522 -12.11303 -11.91238 -11.73602 -11.65809 -11.58717 -11.47648 -11.36656 -11.22665 -11.15316 -10.82649 -10.67814 -10.65879 -10.49791 -10.42841 -9.38507 -8.31969 -7.80956 -5.68841 1.40039 1.47665 1.50147 2.50670 3.32394 3.95147 4.08062 4.17025 4.19341 4.23131 4.33011 4.35231 4.40503 4.43360 4.48397 4.66590 4.75323 4.85583 4.90040 4.94239 4.95664 4.98458 5.04007 5.05059 5.11563 5.12223 5.19550 5.22012 5.26636 5.27497 5.31409 5.34838 5.37290 5.43156 5.46130 5.53008 5.57037 5.60177 5.70284 5.74784 5.80616 5.87206 5.88778 5.94152 6.19258 6.44521 6.52189 6.82380 6.98453 7.22529 7.56871 7.67314 9.12966 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.016841 B = 0.007368 C = 0.006109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.231312 B = 3799.453816 C = 4582.463118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.121 4.121 4 C -0.127 4.127 5 C -0.154 4.154 6 C 0.127 3.873 7 H 0.032 0.968 8 C -0.177 4.177 9 C -0.119 4.119 10 C -0.147 4.147 11 N -0.655 5.655 12 C 0.243 3.757 13 C -0.504 4.504 14 H 0.037 0.963 15 C 0.071 3.929 16 N -0.826 5.826 17 Si 0.882 3.118 18 H -0.291 1.291 19 H -0.272 1.272 20 H -0.282 1.282 21 C -0.088 4.088 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.166 4.166 25 H 0.055 0.945 26 H 0.039 0.961 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.033 0.967 31 H 0.043 0.957 32 H 0.140 0.860 33 H 0.002 0.998 34 H -0.009 1.009 35 H 0.138 0.862 36 H 0.033 0.967 37 H 0.102 0.898 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.303 0.697 44 H 0.255 0.745 45 H 0.030 0.970 46 H 0.055 0.945 47 H 0.047 0.953 48 H 0.059 0.941 49 H 0.057 0.943 50 H 0.062 0.938 51 H 0.042 0.958 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.077 1.488 3.350 5.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C -0.158 4.158 4 C -0.164 4.164 5 C -0.190 4.190 6 C 0.017 3.983 7 H 0.050 0.950 8 C -0.216 4.216 9 C -0.156 4.156 10 C -0.204 4.204 11 N -0.283 5.283 12 C 0.154 3.846 13 C -0.542 4.542 14 H 0.055 0.945 15 C -0.132 4.132 16 N -0.462 5.462 17 Si 0.711 3.289 18 H -0.218 1.218 19 H -0.198 1.198 20 H -0.208 1.208 21 C -0.126 4.126 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.205 4.205 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.156 0.844 33 H 0.020 0.980 34 H 0.010 0.990 35 H 0.155 0.845 36 H 0.052 0.948 37 H 0.120 0.880 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.120 0.880 44 H 0.065 0.935 45 H 0.049 0.951 46 H 0.073 0.927 47 H 0.066 0.934 48 H 0.078 0.922 49 H 0.076 0.924 50 H 0.081 0.919 51 H 0.060 0.940 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.380 0.924 3.248 4.778 hybrid contribution -0.766 1.097 0.264 1.364 sum 2.614 2.021 3.512 4.823 Atomic orbital electron populations 1.21759 0.95506 1.01984 1.01119 1.21434 0.95917 0.96680 1.01315 1.21722 0.98265 0.96471 0.99358 1.22285 0.92664 0.97486 1.03937 1.22978 0.94980 0.98633 1.02401 1.20926 0.95095 0.91357 0.90961 0.94975 1.23081 0.95437 0.99794 1.03274 1.21573 0.96034 0.97795 1.00171 1.21763 1.00797 0.96143 1.01707 1.60801 1.19676 1.44346 1.03494 1.19033 0.91724 0.86602 0.87274 1.20818 0.92345 0.92710 1.48334 0.94532 1.24828 0.98224 0.94853 0.95334 1.69768 1.32181 1.01698 1.42561 0.86971 0.85703 0.78799 0.77441 1.21843 1.19761 1.20762 1.22093 0.97940 0.95555 0.97052 1.22443 0.97951 0.98063 0.97355 1.22352 0.97742 0.99275 0.96275 1.23784 0.98068 0.99805 0.98796 0.92550 0.94228 0.91270 0.92931 0.92219 0.94854 0.93845 0.84375 0.97975 0.98988 0.84492 0.94833 0.88030 0.91844 0.92610 0.91655 0.93001 0.93040 0.88045 0.93483 0.95136 0.92664 0.93427 0.92247 0.92373 0.91905 0.93996 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.37 9.91 71.98 0.71 -3.65 16 2 C -0.12 -4.08 5.93 30.60 0.18 -3.90 16 3 C -0.12 -4.97 5.09 30.59 0.16 -4.81 16 4 C -0.13 -5.63 3.97 30.60 0.12 -5.51 16 5 C -0.15 -6.92 4.01 30.60 0.12 -6.80 16 6 C 0.13 5.18 2.48 44.92 0.11 5.29 16 7 H 0.03 1.30 8.04 -2.39 -0.02 1.28 16 8 C -0.18 -6.47 3.96 30.59 0.12 -6.34 16 9 C -0.12 -3.49 4.83 30.60 0.15 -3.34 16 10 C -0.15 -3.70 9.74 71.98 0.70 -3.00 16 11 N -0.66 -27.27 5.03 -448.40 -2.26 -29.52 16 12 C 0.24 10.22 0.40 3.50 0.00 10.22 16 13 C -0.50 -23.99 4.26 25.60 0.11 -23.88 16 14 H 0.04 1.84 7.09 -2.91 -0.02 1.82 16 15 C 0.07 3.44 2.27 84.66 0.19 3.63 16 16 N -0.83 -40.25 7.44 21.45 0.16 -40.09 16 17 Si 0.88 40.45 26.46 68.60 1.82 42.26 16 18 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 19 H -0.27 -12.28 6.09 99.48 0.61 -11.67 16 20 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 21 C -0.09 -3.73 5.59 31.69 0.18 -3.55 16 22 C -0.12 -4.33 6.91 31.91 0.22 -4.11 16 23 C -0.12 -3.85 6.83 31.67 0.22 -3.64 16 24 C -0.17 -6.05 3.72 31.32 0.12 -5.93 16 25 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.04 1.92 3.56 -2.39 -0.01 1.91 16 32 H 0.14 6.73 4.19 -5.51 -0.02 6.71 16 33 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 34 H -0.01 -0.39 8.12 -2.39 -0.02 -0.41 16 35 H 0.14 6.66 2.07 -17.45 -0.04 6.62 16 36 H 0.03 1.24 8.02 -2.39 -0.02 1.22 16 37 H 0.10 3.99 2.52 -5.26 -0.01 3.98 16 38 H 0.06 1.87 5.78 -2.39 -0.01 1.86 16 39 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.05 1.35 7.43 -2.39 -0.02 1.33 16 42 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.30 11.73 8.02 -89.69 -0.72 11.01 16 44 H 0.25 12.36 8.32 -92.71 -0.77 11.59 16 45 H 0.03 1.28 8.05 -2.39 -0.02 1.26 16 46 H 0.05 2.68 6.03 -2.39 -0.01 2.66 16 47 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 51 H 0.04 1.64 6.35 -2.39 -0.02 1.63 16 52 H 0.09 2.98 2.29 -2.38 -0.01 2.97 16 Total: -1.00 -48.34 348.99 3.14 -45.19 By element: Atomic # 1 Polarization: 41.47 SS G_CDS: 0.01 Total: 41.49 kcal Atomic # 6 Polarization: -62.74 SS G_CDS: 3.41 Total: -59.33 kcal Atomic # 7 Polarization: -67.51 SS G_CDS: -2.10 Total: -69.61 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 1.82 Total: 42.26 kcal Total: -48.34 3.14 -45.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258666800.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.221 kcal (2) G-P(sol) polarization free energy of solvation -48.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds