Wall clock time and date at job start Tue Mar 31 2020 05:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46842 * 2 1 4 4 C 1.52996 * 109.46842 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47134 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47526 * 180.02562 * 5 4 3 7 7 H 1.08997 * 109.47166 * 57.93166 * 6 5 4 8 8 C 1.52997 * 109.47295 * 177.93824 * 6 5 4 9 9 C 1.53004 * 109.46845 * 182.84784 * 8 6 5 10 10 C 1.53002 * 109.46700 * 173.65486 * 9 8 6 11 11 N 1.46910 * 109.46626 * 297.93862 * 6 5 4 12 12 C 1.46937 * 110.98323 * 276.42706 * 11 6 5 13 13 C 1.53034 * 109.47925 * 174.18091 * 12 11 6 14 14 C 1.53125 * 109.30830 * 59.15567 * 13 12 11 15 15 C 1.53117 * 109.16221 * 302.32653 * 14 13 12 16 16 H 1.08996 * 109.50389 * 297.67071 * 15 14 13 17 17 C 1.50703 * 109.49765 * 177.59507 * 15 14 13 18 18 H 1.08005 * 119.99877 * 239.99773 * 17 15 14 19 19 C 1.37875 * 120.00280 * 60.00497 * 17 15 14 20 20 N 1.31516 * 119.99712 * 359.97438 * 19 17 15 21 21 Si 1.86796 * 120.00057 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47162 * 89.99965 * 21 19 17 23 23 H 1.48503 * 109.47167 * 209.99661 * 21 19 17 24 24 H 1.48501 * 109.47118 * 329.99804 * 21 19 17 25 25 C 1.46839 * 111.00038 * 152.20213 * 11 6 5 26 26 H 1.09009 * 109.47141 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47227 * 299.99338 * 1 2 3 28 28 H 1.08997 * 109.47369 * 60.00041 * 1 2 3 29 29 H 1.09001 * 109.46927 * 240.00243 * 2 1 3 30 30 H 1.08997 * 109.47369 * 119.99959 * 2 1 3 31 31 H 1.09001 * 109.47161 * 60.00386 * 3 2 1 32 32 H 1.08997 * 109.47105 * 300.00120 * 3 2 1 33 33 H 1.08998 * 109.47227 * 60.00662 * 4 3 2 34 34 H 1.08994 * 109.47753 * 300.00287 * 4 3 2 35 35 H 1.09000 * 109.47298 * 59.99627 * 5 4 3 36 36 H 1.09008 * 109.47166 * 300.00258 * 5 4 3 37 37 H 1.08993 * 109.47096 * 302.84560 * 8 6 5 38 38 H 1.09000 * 109.47262 * 62.84911 * 8 6 5 39 39 H 1.09003 * 109.47013 * 293.64699 * 9 8 6 40 40 H 1.08996 * 109.47691 * 53.65310 * 9 8 6 41 41 H 1.09001 * 109.47656 * 59.99624 * 10 9 8 42 42 H 1.09001 * 109.47208 * 180.02562 * 10 9 8 43 43 H 1.09003 * 109.46745 * 299.99377 * 10 9 8 44 44 H 1.08997 * 109.51375 * 54.15690 * 12 11 6 45 45 H 1.08996 * 109.45050 * 294.16331 * 12 11 6 46 46 H 1.09002 * 109.50090 * 299.19943 * 13 12 11 47 47 H 1.08996 * 109.50286 * 179.12255 * 13 12 11 48 48 H 1.09002 * 109.51803 * 62.23610 * 14 13 12 49 49 H 1.08999 * 109.51982 * 182.42158 * 14 13 12 50 50 H 0.96999 * 119.99599 * 180.02562 * 20 19 17 51 51 H 1.09006 * 109.46779 * 65.81876 * 25 11 6 52 52 H 1.09005 * 109.45470 * 305.84372 * 25 11 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0013 6 6 5.6099 2.8852 0.0013 7 1 5.9732 2.3400 -0.8698 8 6 6.1198 4.3268 -0.0500 9 6 7.6482 4.3248 -0.1216 10 6 8.1506 5.7546 -0.3319 11 7 6.0995 2.2357 1.2247 12 6 6.1300 3.1832 2.3473 13 6 6.5044 2.4405 3.6319 14 6 7.8765 1.7839 3.4555 15 6 7.8306 0.8394 2.2512 16 1 7.1057 0.0471 2.4376 17 6 9.1935 0.2338 2.0348 18 1 9.7127 0.3922 1.1010 19 6 9.7776 -0.5226 3.0286 20 7 9.1455 -0.7151 4.1657 21 14 11.4666 -1.2738 2.7599 22 1 12.5104 -0.3207 3.2153 23 1 11.5762 -2.5355 3.5354 24 1 11.6559 -1.5625 1.3156 25 6 7.4182 1.6280 1.0062 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6765 1.9564 -0.8899 33 1 3.9336 0.9287 -0.8891 34 1 3.9329 0.9289 0.8907 35 1 3.7161 3.3987 0.8912 36 1 3.7169 3.3992 -0.8887 37 1 5.7154 4.8241 -0.9315 38 1 5.7988 4.8578 0.8462 39 1 8.0550 3.9300 0.8094 40 1 7.9722 3.6997 -0.9537 41 1 7.8266 6.3797 0.5002 42 1 9.2394 5.7532 -0.3834 43 1 7.7438 6.1494 -1.2629 44 1 5.1473 3.6399 2.4651 45 1 6.8692 3.9589 2.1477 46 1 5.7581 1.6737 3.8396 47 1 6.5424 3.1457 4.4621 48 1 8.6295 2.5537 3.2864 49 1 8.1276 1.2183 4.3528 50 1 9.5566 -1.2470 4.8650 51 1 8.1516 2.4110 0.8128 52 1 7.3706 0.9554 0.1497 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258671721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:49 Heat of formation + Delta-G solvation = -41.325995 kcal Electronic energy + Delta-G solvation = -23867.840363 eV Core-core repulsion = 20865.473224 eV Total energy + Delta-G solvation = -3002.367139 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.36205 -36.15030 -35.08160 -33.09793 -32.46980 -30.79743 -29.87599 -28.36773 -26.14081 -24.93381 -23.58592 -22.13129 -21.74241 -21.00637 -20.53528 -19.31411 -18.41278 -16.46078 -15.80885 -15.33905 -14.81087 -14.61435 -14.41105 -14.09195 -13.53470 -13.34795 -13.26945 -13.05982 -12.95984 -12.61919 -12.26662 -12.14977 -11.87643 -11.74023 -11.55819 -11.46314 -11.29127 -11.03769 -10.93517 -10.85210 -10.73356 -10.67427 -10.62005 -10.50909 -10.23006 -10.20068 -10.01000 -9.95510 -9.71374 -9.34426 -8.90533 -8.64035 -8.25228 -7.36022 -5.93113 -3.98976 3.32677 3.39664 3.42605 4.43389 4.62075 4.75734 5.01992 5.07088 5.15226 5.20209 5.26941 5.36919 5.39241 5.53062 5.53301 5.62673 5.72463 5.77272 5.78194 5.83873 5.89289 5.93136 5.96302 6.02874 6.05702 6.06482 6.14107 6.19124 6.21530 6.24579 6.29195 6.33963 6.40148 6.43383 6.51106 6.61324 6.63828 6.67935 6.79666 6.83957 6.88368 7.07778 7.29743 7.49173 7.78802 7.83202 7.96893 8.16204 8.24461 8.54560 9.05610 9.65156 11.12653 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.012351 B = 0.004964 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.400440 B = 5638.769461 C = 7041.785585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.118 4.118 4 C -0.112 4.112 5 C -0.101 4.101 6 C 0.080 3.920 7 H 0.071 0.929 8 C -0.146 4.146 9 C -0.139 4.139 10 C -0.149 4.149 11 N -0.525 5.525 12 C 0.059 3.941 13 C -0.118 4.118 14 C -0.109 4.109 15 C 0.056 3.944 16 H 0.031 0.969 17 C -0.513 4.513 18 H 0.052 0.948 19 C 0.063 3.937 20 N -0.888 5.888 21 Si 0.888 3.112 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.055 3.945 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.047 0.953 44 H 0.054 0.946 45 H 0.032 0.968 46 H 0.058 0.942 47 H 0.042 0.958 48 H 0.027 0.973 49 H 0.088 0.912 50 H 0.258 0.742 51 H 0.036 0.964 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.373 8.516 -7.618 16.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.150 4.150 5 C -0.139 4.139 6 C -0.029 4.029 7 H 0.089 0.911 8 C -0.184 4.184 9 C -0.176 4.176 10 C -0.206 4.206 11 N -0.249 5.249 12 C -0.069 4.069 13 C -0.156 4.156 14 C -0.147 4.147 15 C 0.037 3.963 16 H 0.050 0.950 17 C -0.551 4.551 18 H 0.070 0.930 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.716 3.284 22 H -0.209 1.209 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.072 4.072 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.050 0.950 46 H 0.077 0.923 47 H 0.061 0.939 48 H 0.046 0.954 49 H 0.107 0.893 50 H 0.068 0.932 51 H 0.053 0.947 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.679 8.036 -7.327 15.958 hybrid contribution 1.532 0.270 -0.322 1.588 sum -10.147 8.306 -7.649 15.181 Atomic orbital electron populations 1.21782 0.96467 1.01227 1.01424 1.21538 0.95199 0.97442 1.02188 1.21626 0.96594 0.96189 1.01142 1.21482 0.93546 0.96852 1.03070 1.21527 0.94687 0.97104 1.00617 1.21785 0.94745 0.92421 0.93943 0.91052 1.22280 0.95844 0.98565 1.01753 1.21965 0.95731 0.96721 1.03133 1.21765 1.00747 0.97154 1.00937 1.62161 1.28062 1.31430 1.03229 1.22131 0.98810 0.93862 0.92079 1.21689 1.00434 0.98790 0.94696 1.21629 0.91997 0.97600 1.03456 1.18643 0.95687 0.92991 0.88988 0.95045 1.21166 1.02383 1.31002 1.00598 0.92987 1.24920 0.97373 0.96211 0.95287 1.69897 1.37689 1.39843 1.05297 0.86671 0.84892 0.78722 0.78142 1.20854 1.21297 1.20011 1.22616 0.86877 0.97053 1.00641 0.93081 0.92939 0.93121 0.92262 0.91792 0.92468 0.92915 0.92868 0.90067 0.92435 0.92953 0.92536 0.91601 0.89908 0.92178 0.93119 0.92962 0.93348 0.92794 0.94969 0.92340 0.93926 0.95390 0.89328 0.93160 0.94650 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 37.16 0.37 -1.04 16 2 C -0.13 -1.37 5.93 -26.73 -0.16 -1.53 16 3 C -0.12 -1.32 5.21 -26.73 -0.14 -1.46 16 4 C -0.11 -1.47 5.08 -26.73 -0.14 -1.61 16 5 C -0.10 -1.29 4.80 -26.73 -0.13 -1.42 16 6 C 0.08 1.17 1.99 -67.71 -0.13 1.03 16 7 H 0.07 1.08 7.66 -51.93 -0.40 0.69 16 8 C -0.15 -1.92 4.16 -26.73 -0.11 -2.03 16 9 C -0.14 -1.96 4.18 -26.73 -0.11 -2.07 16 10 C -0.15 -1.80 9.91 37.16 0.37 -1.43 16 11 N -0.52 -9.20 3.81 -226.62 -0.86 -10.06 16 12 C 0.06 1.01 4.00 -3.79 -0.02 1.00 16 13 C -0.12 -2.31 6.09 -26.65 -0.16 -2.47 16 14 C -0.11 -2.56 5.02 -26.61 -0.13 -2.69 16 15 C 0.06 1.38 2.27 -91.69 -0.21 1.17 16 16 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 17 C -0.51 -14.01 8.56 -34.44 -0.29 -14.30 16 18 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 19 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 20 N -0.89 -25.42 11.35 55.43 0.63 -24.79 16 21 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C 0.05 1.13 4.21 -3.84 -0.02 1.11 16 26 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.28 7.66 -51.93 -0.40 0.88 16 35 H 0.06 0.75 7.25 -51.93 -0.38 0.38 16 36 H 0.05 0.60 8.14 -51.92 -0.42 0.17 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.88 6.23 -51.93 -0.32 0.56 16 39 H 0.08 1.38 4.09 -51.93 -0.21 1.17 16 40 H 0.06 0.87 8.11 -51.93 -0.42 0.45 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.05 0.84 6.97 -51.93 -0.36 0.48 16 45 H 0.03 0.55 4.96 -51.93 -0.26 0.30 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 48 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.09 2.36 6.15 -51.93 -0.32 2.04 16 50 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 51 H 0.04 0.73 4.53 -51.93 -0.24 0.49 16 52 H 0.05 1.13 7.90 -51.93 -0.41 0.72 16 LS Contribution 378.64 15.07 5.71 5.71 Total: -1.00 -26.95 378.64 -11.10 -38.05 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -10.44 Total: 0.87 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: -1.11 Total: -26.10 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: -0.23 Total: -34.85 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -26.95 -11.10 -38.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258671721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.272 kcal (2) G-P(sol) polarization free energy of solvation -26.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds