Wall clock time and date at job start Tue Mar 31 2020 05:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46842 * 2 1 4 4 C 1.52996 * 109.46842 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47134 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47526 * 180.02562 * 5 4 3 7 7 H 1.08997 * 109.47166 * 57.93166 * 6 5 4 8 8 C 1.52997 * 109.47295 * 177.93824 * 6 5 4 9 9 C 1.53004 * 109.46845 * 182.84784 * 8 6 5 10 10 C 1.53002 * 109.46700 * 173.65486 * 9 8 6 11 11 N 1.46910 * 109.46626 * 297.93862 * 6 5 4 12 12 C 1.46937 * 110.98323 * 276.42706 * 11 6 5 13 13 C 1.53034 * 109.47925 * 174.18091 * 12 11 6 14 14 C 1.53125 * 109.30830 * 59.15567 * 13 12 11 15 15 C 1.53117 * 109.16221 * 302.32653 * 14 13 12 16 16 H 1.08996 * 109.50389 * 297.67071 * 15 14 13 17 17 C 1.50703 * 109.49765 * 177.59507 * 15 14 13 18 18 H 1.08005 * 119.99877 * 239.99773 * 17 15 14 19 19 C 1.37875 * 120.00280 * 60.00497 * 17 15 14 20 20 N 1.31516 * 119.99712 * 359.97438 * 19 17 15 21 21 Si 1.86796 * 120.00057 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47162 * 89.99965 * 21 19 17 23 23 H 1.48503 * 109.47167 * 209.99661 * 21 19 17 24 24 H 1.48501 * 109.47118 * 329.99804 * 21 19 17 25 25 C 1.46839 * 111.00038 * 152.20213 * 11 6 5 26 26 H 1.09009 * 109.47141 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47227 * 299.99338 * 1 2 3 28 28 H 1.08997 * 109.47369 * 60.00041 * 1 2 3 29 29 H 1.09001 * 109.46927 * 240.00243 * 2 1 3 30 30 H 1.08997 * 109.47369 * 119.99959 * 2 1 3 31 31 H 1.09001 * 109.47161 * 60.00386 * 3 2 1 32 32 H 1.08997 * 109.47105 * 300.00120 * 3 2 1 33 33 H 1.08998 * 109.47227 * 60.00662 * 4 3 2 34 34 H 1.08994 * 109.47753 * 300.00287 * 4 3 2 35 35 H 1.09000 * 109.47298 * 59.99627 * 5 4 3 36 36 H 1.09008 * 109.47166 * 300.00258 * 5 4 3 37 37 H 1.08993 * 109.47096 * 302.84560 * 8 6 5 38 38 H 1.09000 * 109.47262 * 62.84911 * 8 6 5 39 39 H 1.09003 * 109.47013 * 293.64699 * 9 8 6 40 40 H 1.08996 * 109.47691 * 53.65310 * 9 8 6 41 41 H 1.09001 * 109.47656 * 59.99624 * 10 9 8 42 42 H 1.09001 * 109.47208 * 180.02562 * 10 9 8 43 43 H 1.09003 * 109.46745 * 299.99377 * 10 9 8 44 44 H 1.08997 * 109.51375 * 54.15690 * 12 11 6 45 45 H 1.08996 * 109.45050 * 294.16331 * 12 11 6 46 46 H 1.09002 * 109.50090 * 299.19943 * 13 12 11 47 47 H 1.08996 * 109.50286 * 179.12255 * 13 12 11 48 48 H 1.09002 * 109.51803 * 62.23610 * 14 13 12 49 49 H 1.08999 * 109.51982 * 182.42158 * 14 13 12 50 50 H 0.96999 * 119.99599 * 180.02562 * 20 19 17 51 51 H 1.09006 * 109.46779 * 65.81876 * 25 11 6 52 52 H 1.09005 * 109.45470 * 305.84372 * 25 11 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0013 6 6 5.6099 2.8852 0.0013 7 1 5.9732 2.3400 -0.8698 8 6 6.1198 4.3268 -0.0500 9 6 7.6482 4.3248 -0.1216 10 6 8.1506 5.7546 -0.3319 11 7 6.0995 2.2357 1.2247 12 6 6.1300 3.1832 2.3473 13 6 6.5044 2.4405 3.6319 14 6 7.8765 1.7839 3.4555 15 6 7.8306 0.8394 2.2512 16 1 7.1057 0.0471 2.4376 17 6 9.1935 0.2338 2.0348 18 1 9.7127 0.3922 1.1010 19 6 9.7776 -0.5226 3.0286 20 7 9.1455 -0.7151 4.1657 21 14 11.4666 -1.2738 2.7599 22 1 12.5104 -0.3207 3.2153 23 1 11.5762 -2.5355 3.5354 24 1 11.6559 -1.5625 1.3156 25 6 7.4182 1.6280 1.0062 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6765 1.9564 -0.8899 33 1 3.9336 0.9287 -0.8891 34 1 3.9329 0.9289 0.8907 35 1 3.7161 3.3987 0.8912 36 1 3.7169 3.3992 -0.8887 37 1 5.7154 4.8241 -0.9315 38 1 5.7988 4.8578 0.8462 39 1 8.0550 3.9300 0.8094 40 1 7.9722 3.6997 -0.9537 41 1 7.8266 6.3797 0.5002 42 1 9.2394 5.7532 -0.3834 43 1 7.7438 6.1494 -1.2629 44 1 5.1473 3.6399 2.4651 45 1 6.8692 3.9589 2.1477 46 1 5.7581 1.6737 3.8396 47 1 6.5424 3.1457 4.4621 48 1 8.6295 2.5537 3.2864 49 1 8.1276 1.2183 4.3528 50 1 9.5566 -1.2470 4.8650 51 1 8.1516 2.4110 0.8128 52 1 7.3706 0.9554 0.1497 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258671721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:48 Heat of formation + Delta-G solvation = -52.890649 kcal Electronic energy + Delta-G solvation = -23868.341844 eV Core-core repulsion = 20865.473224 eV Total energy + Delta-G solvation = -3002.868620 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.75953 -37.40128 -36.37991 -34.62956 -33.84324 -32.16380 -31.64157 -29.59808 -27.09689 -26.89366 -24.93077 -23.50677 -23.27995 -22.01069 -21.57771 -20.73878 -20.02586 -18.35193 -17.21162 -16.63334 -16.32992 -16.07520 -15.74823 -15.24341 -14.90176 -14.68104 -14.52586 -14.31971 -14.18609 -13.89515 -13.81718 -13.52039 -13.19232 -12.97182 -12.88763 -12.73953 -12.57564 -12.52305 -12.45050 -12.34067 -11.98009 -11.92338 -11.79203 -11.67806 -11.64134 -11.51181 -11.36788 -11.31641 -11.19303 -10.94008 -10.70458 -10.60081 -10.33352 -8.77963 -8.06304 -6.20282 1.40005 1.40733 1.50836 2.43103 3.20325 3.22227 3.71176 4.05304 4.13290 4.14179 4.16143 4.28638 4.31308 4.33885 4.38178 4.49081 4.56037 4.64069 4.68895 4.69850 4.76371 4.81949 4.86871 4.89693 4.93131 4.97570 4.99696 5.02311 5.06492 5.11805 5.12696 5.18246 5.22841 5.27541 5.31722 5.32406 5.37859 5.39665 5.44844 5.48671 5.49964 5.58893 5.61443 5.66034 5.74570 6.03942 6.19740 6.29622 6.55050 6.56531 6.93868 7.47531 8.97993 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.012351 B = 0.004964 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.400440 B = 5638.769461 C = 7041.785585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C -0.111 4.111 4 C -0.109 4.109 5 C -0.094 4.094 6 C 0.079 3.921 7 H 0.063 0.937 8 C -0.137 4.137 9 C -0.138 4.138 10 C -0.144 4.144 11 N -0.532 5.532 12 C 0.066 3.934 13 C -0.112 4.112 14 C -0.100 4.100 15 C 0.055 3.945 16 H -0.011 1.011 17 C -0.534 4.534 18 H 0.049 0.951 19 C 0.015 3.985 20 N -0.916 5.916 21 Si 0.951 3.049 22 H -0.276 1.276 23 H -0.284 1.284 24 H -0.269 1.269 25 C 0.071 3.929 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.065 0.935 44 H 0.081 0.919 45 H 0.038 0.962 46 H 0.044 0.956 47 H 0.064 0.936 48 H 0.020 0.980 49 H 0.053 0.947 50 H 0.259 0.741 51 H 0.039 0.961 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.371 10.482 -9.008 18.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C -0.148 4.148 4 C -0.147 4.147 5 C -0.131 4.131 6 C -0.030 4.030 7 H 0.081 0.919 8 C -0.176 4.176 9 C -0.175 4.175 10 C -0.201 4.201 11 N -0.256 5.256 12 C -0.062 4.062 13 C -0.150 4.150 14 C -0.138 4.138 15 C 0.036 3.964 16 H 0.007 0.993 17 C -0.572 4.572 18 H 0.067 0.933 19 C -0.184 4.184 20 N -0.555 5.555 21 Si 0.777 3.223 22 H -0.201 1.201 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.056 4.056 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.084 0.916 44 H 0.099 0.901 45 H 0.056 0.944 46 H 0.063 0.937 47 H 0.082 0.918 48 H 0.039 0.961 49 H 0.072 0.928 50 H 0.068 0.932 51 H 0.057 0.943 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.687 10.012 -8.728 18.368 hybrid contribution 1.835 -0.382 0.106 1.877 sum -10.852 9.630 -8.622 16.877 Atomic orbital electron populations 1.21753 0.94987 1.01787 1.02053 1.21550 0.96533 0.97224 1.01341 1.21564 0.94898 0.96447 1.01932 1.21413 0.95094 0.96978 1.01183 1.21489 0.92925 0.96804 1.01923 1.21881 0.96040 0.93123 0.91918 0.91874 1.22208 0.94925 0.97391 1.03075 1.21892 0.96553 0.97882 1.01174 1.21723 1.00663 0.95697 1.02059 1.62085 1.25910 1.32607 1.05026 1.22089 1.00323 0.93338 0.90409 1.21603 0.97315 0.98883 0.97181 1.21410 0.94349 0.96839 1.01191 1.18556 0.93630 0.92622 0.91583 0.99263 1.21539 1.03622 1.31534 1.00541 0.93281 1.25695 1.01007 0.96681 0.95021 1.70047 1.39188 1.40321 1.05962 0.85670 0.80500 0.77921 0.78247 1.20139 1.20947 1.19361 1.22255 0.88843 0.96637 0.97853 0.92643 0.92695 0.92058 0.92431 0.93429 0.92313 0.91298 0.93457 0.93312 0.92115 0.90447 0.90158 0.91119 0.92855 0.93051 0.92521 0.93226 0.91631 0.90122 0.94361 0.93683 0.91782 0.96068 0.92830 0.93196 0.94275 0.93944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.91 71.98 0.71 -1.81 16 2 C -0.13 -2.70 5.93 30.59 0.18 -2.52 16 3 C -0.11 -2.30 5.21 30.59 0.16 -2.14 16 4 C -0.11 -2.77 5.08 30.59 0.16 -2.61 16 5 C -0.09 -2.15 4.80 30.59 0.15 -2.00 16 6 C 0.08 2.16 1.99 44.91 0.09 2.25 16 7 H 0.06 1.85 7.66 -2.39 -0.02 1.83 16 8 C -0.14 -3.22 4.16 30.59 0.13 -3.10 16 9 C -0.14 -3.67 4.18 30.60 0.13 -3.54 16 10 C -0.14 -3.13 9.91 71.98 0.71 -2.42 16 11 N -0.53 -18.56 3.81 -870.88 -3.32 -21.87 16 12 C 0.07 2.18 4.00 86.31 0.35 2.52 16 13 C -0.11 -4.39 6.09 30.65 0.19 -4.20 16 14 C -0.10 -4.87 5.02 30.67 0.15 -4.72 16 15 C 0.05 2.85 2.27 -11.49 -0.03 2.82 16 16 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 17 C -0.53 -30.22 8.56 25.60 0.22 -30.00 16 18 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 19 C 0.01 0.82 5.30 84.65 0.45 1.27 16 20 N -0.92 -54.31 11.35 21.45 0.24 -54.07 16 21 Si 0.95 44.55 29.54 68.60 2.03 46.58 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 23 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 25 C 0.07 3.03 4.21 86.33 0.36 3.40 16 26 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.23 8.14 -2.39 -0.02 1.22 16 34 H 0.05 1.56 7.66 -2.39 -0.02 1.54 16 35 H 0.06 1.38 7.25 -2.39 -0.02 1.37 16 36 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.07 1.63 6.23 -2.39 -0.01 1.61 16 39 H 0.05 1.75 4.09 -2.39 -0.01 1.74 16 40 H 0.05 1.44 8.11 -2.39 -0.02 1.42 16 41 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.08 2.28 6.97 -2.39 -0.02 2.27 16 45 H 0.04 1.25 4.96 -2.39 -0.01 1.23 16 46 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 48 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.05 2.98 6.15 -2.39 -0.01 2.97 16 50 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 51 H 0.04 1.64 4.53 -2.38 -0.01 1.63 16 52 H 0.04 1.85 7.90 -2.38 -0.02 1.83 16 Total: -1.00 -60.49 378.64 3.88 -56.61 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.83 Total: 19.54 kcal Atomic # 6 Polarization: -50.89 SS G_CDS: 4.11 Total: -46.78 kcal Atomic # 7 Polarization: -72.86 SS G_CDS: -3.08 Total: -75.94 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -60.49 3.88 -56.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258671721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.717 kcal (2) G-P(sol) polarization free energy of solvation -60.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds