Wall clock time and date at job start Tue Mar 31 2020 05:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47720 * 2 1 4 4 C 1.53000 * 109.47441 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.46863 * 173.07463 * 4 3 2 6 6 H 1.08997 * 109.47831 * 309.10939 * 5 4 3 7 7 C 1.53002 * 109.46941 * 189.10545 * 5 4 3 8 8 C 1.53008 * 109.47024 * 176.87089 * 7 5 4 9 9 C 1.52997 * 109.46757 * 184.97223 * 8 7 5 10 10 N 1.46906 * 109.46867 * 69.11082 * 5 4 3 11 11 C 1.46897 * 110.99935 * 38.02638 * 10 5 4 12 12 C 1.50704 * 109.47358 * 165.08281 * 11 10 5 13 13 H 1.08001 * 119.99325 * 3.77158 * 12 11 10 14 14 C 1.37871 * 120.00048 * 183.77129 * 12 11 10 15 15 N 1.31514 * 120.00056 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99937 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47123 * 89.99575 * 16 14 12 18 18 H 1.48487 * 109.46961 * 209.99780 * 16 14 12 19 19 H 1.48508 * 109.46671 * 329.99711 * 16 14 12 20 20 C 1.46892 * 111.00022 * 274.06827 * 10 5 4 21 21 C 1.54263 * 110.03274 * 325.72910 * 20 10 5 22 22 C 1.54894 * 104.19769 * 217.10371 * 21 20 10 23 23 C 1.54884 * 102.74632 * 37.94567 * 22 21 20 24 24 C 1.53876 * 110.03413 * 208.56313 * 20 10 5 25 25 H 1.08992 * 109.47458 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46879 * 299.99858 * 1 2 3 27 27 H 1.09004 * 109.47446 * 59.99356 * 1 2 3 28 28 H 1.08999 * 109.46879 * 240.00142 * 2 1 3 29 29 H 1.09004 * 109.47446 * 120.00644 * 2 1 3 30 30 H 1.08999 * 109.46828 * 60.00111 * 3 2 1 31 31 H 1.08996 * 109.47055 * 300.00541 * 3 2 1 32 32 H 1.09006 * 109.46584 * 53.08089 * 4 3 2 33 33 H 1.09000 * 109.47446 * 293.08021 * 4 3 2 34 34 H 1.08994 * 109.47595 * 296.87199 * 7 5 4 35 35 H 1.09001 * 109.46963 * 56.87803 * 7 5 4 36 36 H 1.08996 * 109.47059 * 304.97182 * 8 7 5 37 37 H 1.08995 * 109.46621 * 64.97642 * 8 7 5 38 38 H 1.08997 * 109.47439 * 60.00287 * 9 8 7 39 39 H 1.09000 * 109.46676 * 180.02562 * 9 8 7 40 40 H 1.09004 * 109.47398 * 300.00065 * 9 8 7 41 41 H 1.09001 * 109.46791 * 285.08183 * 11 10 5 42 42 H 1.09000 * 109.47319 * 45.07943 * 11 10 5 43 43 H 0.97006 * 119.99450 * 179.97438 * 15 14 12 44 44 H 1.09004 * 110.01800 * 87.17180 * 20 10 5 45 45 H 1.09000 * 110.49136 * 335.78665 * 21 20 10 46 46 H 1.09004 * 110.48727 * 98.42999 * 21 20 10 47 47 H 1.08992 * 110.75712 * 279.63196 * 22 21 20 48 48 H 1.09002 * 110.91495 * 156.32677 * 22 21 20 49 49 H 1.09003 * 110.48999 * 203.37783 * 23 22 21 50 50 H 1.09002 * 110.60510 * 80.78833 * 23 22 21 51 51 H 1.08997 * 110.03548 * 238.57405 * 24 20 10 52 52 H 1.09005 * 110.02854 * 0.02562 * 24 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0802 2.8743 -0.1733 6 1 3.5905 3.3327 -1.0325 7 6 5.5931 2.8527 -0.4000 8 6 6.0915 4.2773 -0.6515 9 6 7.5808 4.2423 -1.0003 10 7 3.7772 3.6522 1.0356 11 6 3.9520 2.8359 2.2443 12 6 3.9957 3.7331 3.4544 13 1 3.8420 4.7965 3.3440 14 6 4.2317 3.1965 4.7023 15 7 4.4183 1.9017 4.8367 16 14 4.2851 4.3086 6.2023 17 1 2.9230 4.4229 6.7825 18 1 5.2070 3.7319 7.2134 19 1 4.7679 5.6551 5.8032 20 6 2.4225 4.2166 0.9727 21 6 2.0719 4.5880 -0.4829 22 6 1.2488 5.8938 -0.3540 23 6 1.9678 6.6387 0.7980 24 6 2.3563 5.5204 1.7872 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.9337 0.8249 -0.8208 33 1 3.9331 1.0397 0.9462 34 1 6.0870 2.4454 0.4822 35 1 5.8221 2.2298 -1.2647 36 1 5.5346 4.7162 -1.4793 37 1 5.9425 4.8779 0.2458 38 1 7.7298 3.6416 -1.8975 39 1 7.9359 5.2572 -1.1790 40 1 8.1377 3.8034 -0.1725 41 1 3.1174 2.1410 2.3372 42 1 4.8846 2.2762 2.1731 43 1 4.5847 1.5243 5.7147 44 1 1.7004 3.4975 1.3596 45 1 2.9791 4.7644 -1.0609 46 1 1.4720 3.8029 -0.9431 47 1 0.2153 5.6742 -0.0863 48 1 1.2926 6.4741 -1.2758 49 1 1.2920 7.3501 1.2728 50 1 2.8581 7.1478 0.4289 51 1 1.6016 5.4344 2.5689 52 1 3.3296 5.7346 2.2288 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258763573.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:21 Heat of formation + Delta-G solvation = -24.111276 kcal Electronic energy + Delta-G solvation = -24764.886543 eV Core-core repulsion = 21763.265890 eV Total energy + Delta-G solvation = -3001.620653 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.38883 -36.21481 -34.60176 -33.57317 -32.31404 -30.27834 -28.47909 -27.93177 -27.14213 -25.39886 -23.79112 -22.27244 -21.24667 -20.50290 -20.32900 -19.36531 -17.95253 -16.97291 -15.30527 -15.26253 -15.11065 -14.54105 -14.28993 -13.92100 -13.69611 -13.47562 -13.16203 -12.87250 -12.72507 -12.43797 -12.14938 -12.00953 -11.76345 -11.54020 -11.20409 -11.10877 -10.99769 -10.87718 -10.85936 -10.82087 -10.65831 -10.54473 -10.50474 -10.37718 -10.22918 -10.03246 -9.94627 -9.80972 -9.78957 -9.59253 -9.21729 -8.70018 -8.32969 -6.99459 -5.94327 -3.93495 3.34578 3.41443 3.44828 4.48320 4.94317 5.04350 5.13930 5.17487 5.26324 5.40034 5.40667 5.43928 5.47044 5.59042 5.63820 5.70682 5.83782 5.87733 5.94528 6.00690 6.03750 6.04522 6.10393 6.12803 6.15307 6.22844 6.27072 6.28285 6.30463 6.34808 6.37775 6.42205 6.46055 6.49455 6.57024 6.61255 6.67458 6.79013 6.83591 6.85448 6.93237 7.00437 7.04110 7.15584 7.43285 7.53392 7.99301 8.25513 8.41655 8.70769 9.15842 9.70305 11.16332 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.009670 B = 0.007024 C = 0.006395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2894.808866 B = 3985.372938 C = 4377.060744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.124 4.124 4 C -0.152 4.152 5 C 0.070 3.930 6 H 0.078 0.922 7 C -0.103 4.103 8 C -0.111 4.111 9 C -0.151 4.151 10 N -0.518 5.518 11 C 0.195 3.805 12 C -0.506 4.506 13 H 0.074 0.926 14 C 0.054 3.946 15 N -0.900 5.900 16 Si 0.889 3.111 17 H -0.283 1.283 18 H -0.289 1.289 19 H -0.274 1.274 20 C 0.095 3.905 21 C -0.132 4.132 22 C -0.123 4.123 23 C -0.124 4.124 24 C -0.112 4.112 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.079 0.921 38 H 0.043 0.957 39 H 0.045 0.955 40 H 0.051 0.949 41 H -0.006 1.006 42 H 0.030 0.970 43 H 0.258 0.742 44 H 0.044 0.956 45 H 0.076 0.924 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.055 0.945 49 H 0.052 0.948 50 H 0.060 0.940 51 H 0.052 0.948 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.690 2.237 -12.371 13.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.161 4.161 4 C -0.191 4.191 5 C -0.039 4.039 6 H 0.095 0.905 7 C -0.141 4.141 8 C -0.149 4.149 9 C -0.208 4.208 10 N -0.242 5.242 11 C 0.070 3.930 12 C -0.545 4.545 13 H 0.092 0.908 14 C -0.146 4.146 15 N -0.541 5.541 16 Si 0.717 3.283 17 H -0.210 1.210 18 H -0.215 1.215 19 H -0.199 1.199 20 C -0.014 4.014 21 C -0.170 4.170 22 C -0.161 4.161 23 C -0.161 4.161 24 C -0.150 4.150 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.011 0.989 42 H 0.048 0.952 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.095 0.905 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.074 0.926 49 H 0.071 0.929 50 H 0.078 0.922 51 H 0.071 0.929 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.310 2.488 -12.196 12.879 hybrid contribution -0.526 -0.347 0.984 1.169 sum -3.836 2.141 -11.211 12.041 Atomic orbital electron populations 1.21757 0.96461 1.00944 1.01559 1.21527 0.95297 0.97740 1.01539 1.21890 0.96098 0.96063 1.02082 1.22347 0.95335 0.98821 1.02634 1.22012 0.95327 0.91501 0.95077 0.90453 1.21542 0.95600 0.96491 1.00468 1.21354 0.93998 0.97769 1.01756 1.21798 0.97742 1.00561 1.00718 1.62449 1.23582 1.35841 1.02283 1.19781 0.95964 0.91781 0.85512 1.21577 1.47004 0.95065 0.90836 0.90822 1.24970 0.95890 0.94859 0.98915 1.69962 1.49985 1.10769 1.23337 0.86644 0.77656 0.81005 0.82988 1.20977 1.21495 1.19860 1.22171 0.90458 0.95877 0.92887 1.22839 0.99442 0.96666 0.98008 1.22445 0.98771 0.96743 0.98158 1.22392 0.99223 0.97954 0.96579 1.22387 1.02935 0.93055 0.96647 0.93309 0.92731 0.93210 0.92807 0.92016 0.90783 0.92781 0.93244 0.90288 0.91745 0.93473 0.93477 0.90246 0.93764 0.93567 0.92951 0.98862 0.95227 0.93249 0.93832 0.90546 0.92408 0.92285 0.92609 0.92946 0.92166 0.92885 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.15 0.37 -1.53 16 2 C -0.12 -1.77 5.93 -26.73 -0.16 -1.93 16 3 C -0.12 -1.96 3.77 -26.73 -0.10 -2.06 16 4 C -0.15 -2.58 4.17 -26.73 -0.11 -2.69 16 5 C 0.07 1.18 1.55 -67.71 -0.10 1.08 16 6 H 0.08 1.22 4.67 -51.93 -0.24 0.97 16 7 C -0.10 -1.69 4.77 -26.73 -0.13 -1.81 16 8 C -0.11 -1.71 5.74 -26.73 -0.15 -1.86 16 9 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 10 N -0.52 -10.18 3.60 -218.82 -0.79 -10.96 16 11 C 0.19 4.75 3.11 -4.98 -0.02 4.73 16 12 C -0.51 -13.57 8.50 -34.44 -0.29 -13.86 16 13 H 0.07 1.93 4.51 -52.49 -0.24 1.69 16 14 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 15 N -0.90 -26.39 13.29 55.43 0.74 -25.66 16 16 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 20 C 0.09 1.72 1.87 -66.60 -0.12 1.59 16 21 C -0.13 -1.96 4.56 -25.07 -0.11 -2.07 16 22 C -0.12 -1.66 6.91 -24.74 -0.17 -1.83 16 23 C -0.12 -1.83 6.83 -25.07 -0.17 -2.01 16 24 C -0.11 -2.06 5.28 -25.61 -0.14 -2.20 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.07 1.35 4.29 -51.93 -0.22 1.13 16 31 H 0.05 0.78 6.29 -51.93 -0.33 0.46 16 32 H 0.05 0.76 8.12 -51.93 -0.42 0.33 16 33 H 0.08 1.59 5.79 -51.93 -0.30 1.29 16 34 H 0.06 1.22 7.09 -51.93 -0.37 0.85 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 1.42 7.84 -51.93 -0.41 1.01 16 38 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H -0.01 -0.17 5.80 -51.93 -0.30 -0.47 16 42 H 0.03 0.80 6.40 -51.93 -0.33 0.47 16 43 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.04 0.88 5.34 -51.93 -0.28 0.60 16 45 H 0.08 1.14 6.28 -51.93 -0.33 0.82 16 46 H 0.06 0.81 6.07 -51.93 -0.32 0.49 16 47 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 51 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 52 H 0.09 1.94 5.50 -51.93 -0.29 1.66 16 LS Contribution 370.44 15.07 5.58 5.58 Total: -1.00 -27.29 370.44 -10.47 -37.76 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -9.84 Total: 3.42 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: -1.14 Total: -26.70 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: -0.05 Total: -36.62 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -27.29 -10.47 -37.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258763573.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.649 kcal (2) G-P(sol) polarization free energy of solvation -27.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds