Wall clock time and date at job start Tue Mar 31 2020 05:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47100 * 2 1 4 4 C 1.53001 * 109.46888 * 119.99734 * 2 1 3 5 5 C 1.52993 * 109.47148 * 66.14038 * 4 2 1 6 6 C 1.52999 * 109.47593 * 65.27379 * 5 4 2 7 7 C 1.52992 * 109.47600 * 181.32057 * 6 5 4 8 8 C 1.53000 * 109.47120 * 65.34385 * 7 6 5 9 9 C 1.53000 * 109.47288 * 185.34459 * 7 6 5 10 10 N 1.46900 * 109.46941 * 185.27543 * 5 4 2 11 11 C 1.46845 * 111.00163 * 71.56657 * 10 5 4 12 12 C 1.53040 * 109.52641 * 174.16241 * 11 10 5 13 13 C 1.53120 * 109.27676 * 59.17151 * 12 11 10 14 14 C 1.50704 * 109.57045 * 182.41226 * 13 12 11 15 15 H 1.08001 * 120.00104 * 119.71989 * 14 13 12 16 16 C 1.37877 * 120.00363 * 299.71509 * 14 13 12 17 17 N 1.31522 * 119.99938 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00521 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47258 * 90.00062 * 18 16 14 20 20 H 1.48497 * 109.47391 * 210.00450 * 18 16 14 21 21 H 1.48499 * 109.46752 * 330.00155 * 18 16 14 22 22 C 1.53119 * 109.16373 * 302.34843 * 13 12 11 23 23 C 1.46844 * 111.00155 * 307.34994 * 10 5 4 24 24 H 1.09001 * 109.47072 * 62.21666 * 1 2 3 25 25 H 1.08998 * 109.47030 * 182.22178 * 1 2 3 26 26 H 1.09002 * 109.46785 * 302.21818 * 1 2 3 27 27 H 1.08994 * 109.46988 * 239.99468 * 2 1 3 28 28 H 1.09001 * 109.47189 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46857 * 300.00044 * 3 2 1 30 30 H 1.09003 * 109.47496 * 59.99668 * 3 2 1 31 31 H 1.08997 * 109.47415 * 306.13283 * 4 2 1 32 32 H 1.09004 * 109.46839 * 186.14117 * 4 2 1 33 33 H 1.09002 * 109.47047 * 305.27073 * 5 4 2 34 34 H 1.09001 * 109.46896 * 301.32450 * 6 5 4 35 35 H 1.09011 * 109.46938 * 61.31863 * 6 5 4 36 36 H 1.08999 * 109.46995 * 305.35037 * 7 6 5 37 37 H 1.08997 * 109.47635 * 180.02562 * 8 7 6 38 38 H 1.09001 * 109.47390 * 300.00435 * 8 7 6 39 39 H 1.09005 * 109.47276 * 60.00132 * 8 7 6 40 40 H 1.09005 * 109.46920 * 60.00455 * 9 7 6 41 41 H 1.09006 * 109.46781 * 179.97438 * 9 7 6 42 42 H 1.08996 * 109.47089 * 300.00095 * 9 7 6 43 43 H 1.09003 * 109.46009 * 294.17131 * 11 10 5 44 44 H 1.09001 * 109.46419 * 54.14147 * 11 10 5 45 45 H 1.08999 * 109.50691 * 179.11897 * 12 11 10 46 46 H 1.09004 * 109.50006 * 299.23375 * 12 11 10 47 47 H 1.09001 * 109.52080 * 62.25994 * 13 12 11 48 48 H 0.96998 * 120.00369 * 179.97438 * 17 16 14 49 49 H 1.09004 * 109.50145 * 297.71146 * 22 13 12 50 50 H 1.09005 * 109.53325 * 177.61713 * 22 13 12 51 51 H 1.09001 * 109.46636 * 305.86207 * 23 10 5 52 52 H 1.09002 * 109.46021 * 65.83816 * 23 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6599 -2.2013 1.1746 6 6 2.3965 -2.8588 0.0059 7 6 1.9913 -4.3310 -0.0891 8 6 0.5075 -4.4293 -0.4489 9 6 2.8252 -5.0208 -1.1706 10 7 2.0371 -2.8676 2.4283 11 6 1.1564 -2.4558 3.5288 12 6 1.4837 -3.2746 4.7796 13 6 2.9491 -3.0494 5.1621 14 6 3.2949 -3.8984 6.3582 15 1 4.0739 -4.6429 6.2850 16 6 2.6168 -3.7248 7.5461 17 7 1.6679 -2.8185 7.6352 18 14 3.0458 -4.7767 9.0290 19 1 4.1054 -4.1044 9.8229 20 1 1.8372 -4.9604 9.8719 21 1 3.5359 -6.1015 8.5709 22 6 3.8425 -3.4405 3.9816 23 6 3.4468 -2.6168 2.7540 24 1 -0.3633 0.4790 -0.9092 25 1 -0.3633 -1.0269 0.0398 26 1 -0.3633 0.5479 0.8695 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.5898 -0.2747 2.1359 32 1 3.1245 -0.6270 1.3060 33 1 0.5842 -2.2930 1.0238 34 1 2.1347 -2.3493 -0.9214 35 1 3.4721 -2.7877 0.1683 36 1 2.1654 -4.8184 0.8702 37 1 0.2185 -5.4781 -0.5162 38 1 -0.0867 -3.9378 0.3215 39 1 0.3331 -3.9419 -1.4082 40 1 3.8823 -4.9509 -0.9141 41 1 2.5367 -6.0699 -1.2379 42 1 2.6509 -4.5334 -2.1298 43 1 1.3077 -1.3968 3.7382 44 1 0.1176 -2.6250 3.2454 45 1 0.8404 -2.9578 5.6006 46 1 1.3193 -4.3326 4.5752 47 1 3.1050 -1.9982 5.4043 48 1 1.1906 -2.6965 8.4708 49 1 3.7153 -4.5011 3.7647 50 1 4.8848 -3.2427 4.2321 51 1 4.0716 -2.9029 1.9079 52 1 3.5874 -1.5571 2.9672 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258834531.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:54 Heat of formation + Delta-G solvation = -43.582425 kcal Electronic energy + Delta-G solvation = -24283.120043 eV Core-core repulsion = 21280.655057 eV Total energy + Delta-G solvation = -3002.464985 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.45263 -36.56172 -35.53741 -33.56906 -31.47220 -29.91435 -28.73406 -27.22912 -26.98986 -26.17963 -25.38380 -22.65217 -21.80603 -20.76926 -20.16204 -19.13595 -17.97363 -16.40365 -15.60700 -15.35477 -14.84134 -14.53062 -14.29602 -13.93147 -13.73613 -13.67051 -13.06601 -12.80773 -12.70309 -12.51207 -12.38961 -12.24298 -12.12932 -11.91594 -11.78213 -11.62885 -11.34816 -11.23985 -10.96600 -10.86061 -10.78167 -10.68391 -10.56831 -10.40463 -10.27976 -10.18235 -10.04221 -10.00645 -9.73407 -9.35717 -8.85152 -8.64473 -8.24155 -7.53250 -5.92756 -3.97765 3.33764 3.40496 3.44218 4.47607 4.51216 4.79830 4.85848 4.99596 5.11783 5.15796 5.18094 5.37448 5.49440 5.56439 5.58216 5.62180 5.67623 5.73421 5.76668 5.80680 5.87144 5.92852 5.96774 5.99076 5.99607 6.04842 6.09769 6.12076 6.16626 6.19935 6.26159 6.30480 6.35622 6.37532 6.47271 6.57339 6.61554 6.70307 6.72276 6.78094 6.95013 7.16418 7.25894 7.52930 7.71772 7.82888 7.92401 8.12028 8.22875 8.54199 9.06105 9.66390 11.13300 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.018115 B = 0.004600 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.272771 B = 6085.876238 C = 6885.664916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.148 4.148 5 C 0.080 3.920 6 C -0.103 4.103 7 C -0.092 4.092 8 C -0.142 4.142 9 C -0.146 4.146 10 N -0.523 5.523 11 C 0.058 3.942 12 C -0.103 4.103 13 C 0.049 3.951 14 C -0.509 4.509 15 H 0.053 0.947 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.888 3.112 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.106 4.106 23 C 0.058 3.942 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.089 0.911 37 H 0.047 0.953 38 H 0.057 0.943 39 H 0.044 0.956 40 H 0.050 0.950 41 H 0.049 0.951 42 H 0.046 0.954 43 H 0.022 0.978 44 H 0.051 0.949 45 H 0.090 0.910 46 H 0.041 0.959 47 H 0.018 0.982 48 H 0.258 0.742 49 H 0.054 0.946 50 H 0.046 0.954 51 H 0.057 0.943 52 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.445 3.332 -17.516 17.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.204 4.204 4 C -0.187 4.187 5 C -0.029 4.029 6 C -0.140 4.140 7 C -0.111 4.111 8 C -0.200 4.200 9 C -0.203 4.203 10 N -0.246 5.246 11 C -0.069 4.069 12 C -0.141 4.141 13 C 0.031 3.969 14 C -0.547 4.547 15 H 0.071 0.929 16 C -0.140 4.140 17 N -0.532 5.532 18 Si 0.716 3.284 19 H -0.209 1.209 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.144 4.144 23 C -0.070 4.070 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.040 0.960 44 H 0.070 0.930 45 H 0.108 0.892 46 H 0.060 0.940 47 H 0.036 0.964 48 H 0.068 0.932 49 H 0.073 0.927 50 H 0.064 0.936 51 H 0.076 0.924 52 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -1.635 2.881 -17.433 17.745 hybrid contribution 0.283 0.442 1.018 1.145 sum -1.352 3.322 -16.415 16.802 Atomic orbital electron populations 1.21888 0.95525 1.01879 1.01247 1.21117 0.95713 0.95786 0.98669 1.21847 1.00803 0.96412 1.01359 1.22342 1.01258 0.97300 0.97776 1.21848 0.99823 0.90228 0.90955 1.21700 0.99999 0.95361 0.96984 1.21024 0.94457 0.95813 0.99785 1.21822 0.96617 1.00956 1.00567 1.21851 0.99888 1.00018 0.98556 1.62194 1.03297 1.56857 1.02291 1.22242 0.94758 0.97534 0.92389 1.21640 1.01029 0.97585 0.93869 1.18659 0.90813 0.96318 0.91133 1.21228 1.18686 1.19399 0.95392 0.92861 1.24959 0.95134 0.95332 0.98560 1.69883 1.23558 1.33753 1.25995 0.86658 0.77768 0.80943 0.83000 1.20858 1.21333 1.19976 1.21672 0.98948 0.99077 0.94694 1.22139 0.88867 0.97825 0.98172 0.93229 0.92347 0.92841 0.91154 0.92928 0.93131 0.92838 0.91810 0.91858 0.90212 0.92334 0.92205 0.89241 0.93383 0.92447 0.93722 0.93064 0.93176 0.93516 0.95978 0.93039 0.89188 0.93968 0.96355 0.93189 0.92674 0.93564 0.92439 0.95717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.02 37.16 0.34 -1.20 16 2 C -0.09 -1.01 2.80 -90.62 -0.25 -1.27 16 3 C -0.15 -1.48 9.19 37.16 0.34 -1.14 16 4 C -0.15 -1.94 3.26 -26.73 -0.09 -2.02 16 5 C 0.08 1.10 1.48 -67.72 -0.10 1.00 16 6 C -0.10 -1.25 3.85 -26.74 -0.10 -1.36 16 7 C -0.09 -1.14 2.84 -90.62 -0.26 -1.40 16 8 C -0.14 -1.63 8.96 37.16 0.33 -1.30 16 9 C -0.15 -1.57 9.19 37.16 0.34 -1.23 16 10 N -0.52 -8.89 3.79 -226.70 -0.86 -9.75 16 11 C 0.06 1.13 5.16 -3.83 -0.02 1.11 16 12 C -0.10 -2.43 5.12 -26.65 -0.14 -2.57 16 13 C 0.05 1.23 2.16 -91.65 -0.20 1.03 16 14 C -0.51 -14.10 8.56 -34.44 -0.29 -14.40 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 17 N -0.89 -25.62 11.37 55.43 0.63 -24.99 16 18 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 22 C -0.11 -2.24 5.32 -26.65 -0.14 -2.38 16 23 C 0.06 1.02 4.51 -3.84 -0.02 1.01 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.62 6.40 -51.93 -0.33 0.28 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.73 6.28 -51.93 -0.33 0.41 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.95 6.67 -51.93 -0.35 0.60 16 32 H 0.06 0.87 6.78 -51.93 -0.35 0.52 16 33 H 0.08 1.10 4.52 -51.93 -0.23 0.87 16 34 H 0.06 0.64 6.39 -51.93 -0.33 0.31 16 35 H 0.06 0.77 6.43 -51.92 -0.33 0.43 16 36 H 0.09 1.34 7.49 -51.93 -0.39 0.95 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.71 6.55 -51.93 -0.34 0.37 16 39 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.02 0.44 6.82 -51.93 -0.35 0.09 16 44 H 0.05 0.94 8.00 -51.93 -0.42 0.52 16 45 H 0.09 2.38 6.17 -51.93 -0.32 2.06 16 46 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 47 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 49 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 50 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 51 H 0.06 0.92 6.26 -51.93 -0.32 0.60 16 52 H 0.02 0.45 6.69 -51.93 -0.35 0.11 16 LS Contribution 374.27 15.07 5.64 5.64 Total: -1.00 -27.28 374.27 -10.17 -37.45 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -10.21 Total: -0.31 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: -0.35 Total: -24.52 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: -0.23 Total: -34.75 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -27.28 -10.17 -37.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258834531.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.129 kcal (2) G-P(sol) polarization free energy of solvation -27.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds