Wall clock time and date at job start Tue Mar 31 2020 05:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47100 * 2 1 4 4 C 1.53001 * 109.46888 * 119.99734 * 2 1 3 5 5 C 1.52993 * 109.47148 * 66.14038 * 4 2 1 6 6 C 1.52999 * 109.47593 * 65.27379 * 5 4 2 7 7 C 1.52992 * 109.47600 * 181.32057 * 6 5 4 8 8 C 1.53000 * 109.47120 * 65.34385 * 7 6 5 9 9 C 1.53000 * 109.47288 * 185.34459 * 7 6 5 10 10 N 1.46900 * 109.46941 * 185.27543 * 5 4 2 11 11 C 1.46845 * 111.00163 * 71.56657 * 10 5 4 12 12 C 1.53040 * 109.52641 * 174.16241 * 11 10 5 13 13 C 1.53120 * 109.27676 * 59.17151 * 12 11 10 14 14 C 1.50704 * 109.57045 * 182.41226 * 13 12 11 15 15 H 1.08001 * 120.00104 * 119.71989 * 14 13 12 16 16 C 1.37877 * 120.00363 * 299.71509 * 14 13 12 17 17 N 1.31522 * 119.99938 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00521 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47258 * 90.00062 * 18 16 14 20 20 H 1.48497 * 109.47391 * 210.00450 * 18 16 14 21 21 H 1.48499 * 109.46752 * 330.00155 * 18 16 14 22 22 C 1.53119 * 109.16373 * 302.34843 * 13 12 11 23 23 C 1.46844 * 111.00155 * 307.34994 * 10 5 4 24 24 H 1.09001 * 109.47072 * 62.21666 * 1 2 3 25 25 H 1.08998 * 109.47030 * 182.22178 * 1 2 3 26 26 H 1.09002 * 109.46785 * 302.21818 * 1 2 3 27 27 H 1.08994 * 109.46988 * 239.99468 * 2 1 3 28 28 H 1.09001 * 109.47189 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46857 * 300.00044 * 3 2 1 30 30 H 1.09003 * 109.47496 * 59.99668 * 3 2 1 31 31 H 1.08997 * 109.47415 * 306.13283 * 4 2 1 32 32 H 1.09004 * 109.46839 * 186.14117 * 4 2 1 33 33 H 1.09002 * 109.47047 * 305.27073 * 5 4 2 34 34 H 1.09001 * 109.46896 * 301.32450 * 6 5 4 35 35 H 1.09011 * 109.46938 * 61.31863 * 6 5 4 36 36 H 1.08999 * 109.46995 * 305.35037 * 7 6 5 37 37 H 1.08997 * 109.47635 * 180.02562 * 8 7 6 38 38 H 1.09001 * 109.47390 * 300.00435 * 8 7 6 39 39 H 1.09005 * 109.47276 * 60.00132 * 8 7 6 40 40 H 1.09005 * 109.46920 * 60.00455 * 9 7 6 41 41 H 1.09006 * 109.46781 * 179.97438 * 9 7 6 42 42 H 1.08996 * 109.47089 * 300.00095 * 9 7 6 43 43 H 1.09003 * 109.46009 * 294.17131 * 11 10 5 44 44 H 1.09001 * 109.46419 * 54.14147 * 11 10 5 45 45 H 1.08999 * 109.50691 * 179.11897 * 12 11 10 46 46 H 1.09004 * 109.50006 * 299.23375 * 12 11 10 47 47 H 1.09001 * 109.52080 * 62.25994 * 13 12 11 48 48 H 0.96998 * 120.00369 * 179.97438 * 17 16 14 49 49 H 1.09004 * 109.50145 * 297.71146 * 22 13 12 50 50 H 1.09005 * 109.53325 * 177.61713 * 22 13 12 51 51 H 1.09001 * 109.46636 * 305.86207 * 23 10 5 52 52 H 1.09002 * 109.46021 * 65.83816 * 23 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6599 -2.2013 1.1746 6 6 2.3965 -2.8588 0.0059 7 6 1.9913 -4.3310 -0.0891 8 6 0.5075 -4.4293 -0.4489 9 6 2.8252 -5.0208 -1.1706 10 7 2.0371 -2.8676 2.4283 11 6 1.1564 -2.4558 3.5288 12 6 1.4837 -3.2746 4.7796 13 6 2.9491 -3.0494 5.1621 14 6 3.2949 -3.8984 6.3582 15 1 4.0739 -4.6429 6.2850 16 6 2.6168 -3.7248 7.5461 17 7 1.6679 -2.8185 7.6352 18 14 3.0458 -4.7767 9.0290 19 1 4.1054 -4.1044 9.8229 20 1 1.8372 -4.9604 9.8719 21 1 3.5359 -6.1015 8.5709 22 6 3.8425 -3.4405 3.9816 23 6 3.4468 -2.6168 2.7540 24 1 -0.3633 0.4790 -0.9092 25 1 -0.3633 -1.0269 0.0398 26 1 -0.3633 0.5479 0.8695 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.5898 -0.2747 2.1359 32 1 3.1245 -0.6270 1.3060 33 1 0.5842 -2.2930 1.0238 34 1 2.1347 -2.3493 -0.9214 35 1 3.4721 -2.7877 0.1683 36 1 2.1654 -4.8184 0.8702 37 1 0.2185 -5.4781 -0.5162 38 1 -0.0867 -3.9378 0.3215 39 1 0.3331 -3.9419 -1.4082 40 1 3.8823 -4.9509 -0.9141 41 1 2.5367 -6.0699 -1.2379 42 1 2.6509 -4.5334 -2.1298 43 1 1.3077 -1.3968 3.7382 44 1 0.1176 -2.6250 3.2454 45 1 0.8404 -2.9578 5.6006 46 1 1.3193 -4.3326 4.5752 47 1 3.1050 -1.9982 5.4043 48 1 1.1906 -2.6965 8.4708 49 1 3.7153 -4.5011 3.7647 50 1 4.8848 -3.2427 4.2321 51 1 4.0716 -2.9029 1.9079 52 1 3.5874 -1.5571 2.9672 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258834531.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:53 Heat of formation + Delta-G solvation = -55.686988 kcal Electronic energy + Delta-G solvation = -24283.644936 eV Core-core repulsion = 21280.655057 eV Total energy + Delta-G solvation = -3002.989879 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.76092 -37.98916 -36.44496 -35.29017 -33.21651 -31.56036 -30.17056 -28.06792 -27.84100 -27.27398 -27.16450 -24.26986 -23.51992 -21.97155 -21.13672 -20.58696 -19.38022 -18.45254 -16.97419 -16.61420 -16.25165 -15.94577 -15.53220 -15.10592 -14.95791 -14.77713 -14.64126 -14.27360 -14.09612 -14.02673 -13.63477 -13.26956 -13.07369 -13.03459 -12.96067 -12.89707 -12.80088 -12.56638 -12.48733 -12.28454 -12.19371 -12.05186 -11.87415 -11.73010 -11.57019 -11.50431 -11.35225 -11.18890 -11.09062 -10.99341 -10.69410 -10.60787 -10.34779 -8.95067 -8.07165 -6.20588 1.40227 1.41076 1.51440 2.43929 3.13278 3.19912 3.78958 3.89984 4.09887 4.14445 4.21348 4.26225 4.32011 4.36173 4.42228 4.51853 4.59907 4.61837 4.70601 4.77111 4.78728 4.82384 4.90715 4.91860 4.96257 4.98797 5.01161 5.02435 5.07166 5.11205 5.12309 5.14672 5.17420 5.25424 5.27002 5.29258 5.34579 5.40381 5.48256 5.49849 5.57423 5.62852 5.63180 5.67742 5.79020 6.03428 6.08428 6.39553 6.42859 6.49171 6.91363 7.47110 8.97218 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.018115 B = 0.004600 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.272771 B = 6085.876238 C = 6885.664916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.146 4.146 4 C -0.142 4.142 5 C 0.083 3.917 6 C -0.096 4.096 7 C -0.092 4.092 8 C -0.139 4.139 9 C -0.142 4.142 10 N -0.524 5.524 11 C 0.072 3.928 12 C -0.093 4.093 13 C 0.047 3.953 14 C -0.533 4.533 15 H 0.049 0.951 16 C 0.013 3.987 17 N -0.918 5.918 18 Si 0.952 3.048 19 H -0.276 1.276 20 H -0.283 1.283 21 H -0.269 1.269 22 C -0.099 4.099 23 C 0.068 3.932 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.042 0.958 27 H 0.084 0.916 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.045 0.955 39 H 0.061 0.939 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.061 0.939 43 H 0.012 0.988 44 H 0.065 0.935 45 H 0.057 0.943 46 H 0.028 0.972 47 H -0.016 1.016 48 H 0.259 0.741 49 H 0.049 0.951 50 H 0.047 0.953 51 H 0.083 0.917 52 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.250 3.162 -19.807 20.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 C -0.204 4.204 4 C -0.181 4.181 5 C -0.025 4.025 6 C -0.133 4.133 7 C -0.111 4.111 8 C -0.197 4.197 9 C -0.199 4.199 10 N -0.248 5.248 11 C -0.056 4.056 12 C -0.131 4.131 13 C 0.029 3.971 14 C -0.571 4.571 15 H 0.067 0.933 16 C -0.185 4.185 17 N -0.558 5.558 18 Si 0.778 3.222 19 H -0.202 1.202 20 H -0.209 1.209 21 H -0.194 1.194 22 C -0.137 4.137 23 C -0.060 4.060 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.102 0.898 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.030 0.970 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.047 0.953 47 H 0.002 0.998 48 H 0.068 0.932 49 H 0.067 0.933 50 H 0.066 0.934 51 H 0.102 0.898 52 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -1.434 2.712 -19.739 19.976 hybrid contribution 0.215 0.503 1.735 1.819 sum -1.219 3.215 -18.004 18.330 Atomic orbital electron populations 1.21883 0.95111 1.01815 1.01658 1.21090 0.95995 0.96019 0.97616 1.21839 1.00872 0.95964 1.01685 1.22265 1.00745 0.96870 0.98234 1.21929 1.00374 0.90574 0.89634 1.21668 0.99448 0.95331 0.96882 1.20974 0.95455 0.95688 0.98956 1.21790 0.95685 1.01173 1.01022 1.21805 0.99390 1.00139 0.98577 1.62142 1.02428 1.57556 1.02652 1.21958 0.96023 0.95956 0.91625 1.21391 0.99561 0.97213 0.94951 1.18620 0.92528 0.93802 0.92186 1.21600 1.18813 1.19810 0.96867 0.93263 1.25729 0.94992 0.96497 1.01330 1.70026 1.24229 1.34910 1.26627 0.85652 0.77649 0.79424 0.79512 1.20212 1.20857 1.19370 1.21537 0.98231 0.99190 0.94718 1.22007 0.89749 0.96760 0.97450 0.91528 0.92520 0.93892 0.89794 0.92854 0.91511 0.93835 0.94131 0.92398 0.89849 0.90100 0.92493 0.92254 0.93273 0.93631 0.91956 0.93238 0.92992 0.91971 0.96983 0.91655 0.92408 0.95277 0.99795 0.93156 0.93252 0.93405 0.89846 0.96249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.02 71.98 0.65 -2.08 16 2 C -0.09 -1.70 2.80 -10.79 -0.03 -1.73 16 3 C -0.15 -2.65 9.19 71.98 0.66 -1.99 16 4 C -0.14 -3.55 3.26 30.59 0.10 -3.45 16 5 C 0.08 2.15 1.48 44.91 0.07 2.21 16 6 C -0.10 -2.08 3.85 30.59 0.12 -1.96 16 7 C -0.09 -2.08 2.84 -10.80 -0.03 -2.11 16 8 C -0.14 -2.87 8.96 71.98 0.64 -2.23 16 9 C -0.14 -2.68 9.19 71.98 0.66 -2.02 16 10 N -0.52 -17.65 3.79 -871.14 -3.30 -20.96 16 11 C 0.07 2.86 5.16 86.33 0.45 3.31 16 12 C -0.09 -4.56 5.12 30.65 0.16 -4.41 16 13 C 0.05 2.45 2.16 -11.46 -0.02 2.43 16 14 C -0.53 -30.40 8.56 25.60 0.22 -30.18 16 15 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 16 C 0.01 0.73 5.31 84.65 0.45 1.17 16 17 N -0.92 -54.33 11.37 21.45 0.24 -54.09 16 18 Si 0.95 44.72 29.54 68.60 2.03 46.74 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 22 C -0.10 -4.24 5.32 30.65 0.16 -4.08 16 23 C 0.07 2.39 4.51 86.32 0.39 2.78 16 24 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.06 1.06 6.40 -2.39 -0.02 1.05 16 26 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.08 1.42 6.28 -2.39 -0.02 1.41 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.04 1.20 6.67 -2.39 -0.02 1.19 16 32 H 0.06 1.51 6.78 -2.38 -0.02 1.49 16 33 H 0.08 2.16 4.52 -2.39 -0.01 2.14 16 34 H 0.08 1.45 6.39 -2.39 -0.02 1.43 16 35 H 0.06 1.29 6.43 -2.38 -0.02 1.28 16 36 H 0.06 1.71 7.49 -2.39 -0.02 1.70 16 37 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.04 1.04 6.55 -2.39 -0.02 1.02 16 39 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 42 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.01 0.50 6.82 -2.39 -0.02 0.48 16 44 H 0.07 2.39 8.00 -2.39 -0.02 2.37 16 45 H 0.06 3.21 6.17 -2.39 -0.01 3.19 16 46 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 47 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 48 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 49 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 50 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 51 H 0.08 2.54 6.26 -2.39 -0.01 2.52 16 52 H 0.02 0.71 6.69 -2.39 -0.02 0.69 16 Total: -1.00 -60.31 374.27 4.44 -55.87 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.84 Total: 16.75 kcal Atomic # 6 Polarization: -48.96 SS G_CDS: 4.64 Total: -44.32 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: -3.06 Total: -75.04 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -60.31 4.44 -55.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258834531.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.181 kcal (2) G-P(sol) polarization free energy of solvation -60.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds