Wall clock time and date at job start Tue Mar 31 2020 05:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 5 5 C 1.52997 * 109.47056 * 190.00229 * 4 2 1 6 6 N 1.46902 * 109.47180 * 180.02562 * 5 4 2 7 7 C 1.48506 * 111.00230 * 69.86993 * 6 5 4 8 8 C 1.54895 * 103.20784 * 160.15735 * 7 6 5 9 9 C 1.54520 * 103.07723 * 322.57730 * 8 7 6 10 10 H 1.08995 * 111.69456 * 260.24619 * 9 8 7 11 11 C 1.47826 * 110.99918 * 187.29297 * 6 5 4 12 12 H 1.09002 * 111.66359 * 335.96966 * 11 6 5 13 13 C 1.56397 * 108.98614 * 101.56087 * 11 6 5 14 14 C 1.54891 * 103.11076 * 135.85560 * 13 11 6 15 15 N 1.47834 * 108.84566 * 136.49918 * 9 8 7 16 16 C 1.46899 * 110.99789 * 100.59176 * 15 9 8 17 17 C 1.52998 * 109.47267 * 189.99705 * 16 15 9 18 18 C 1.50703 * 109.47192 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00139 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99851 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99903 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00039 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47510 * 89.99965 * 22 20 18 24 24 H 1.48500 * 109.47033 * 210.00180 * 22 20 18 25 25 H 1.48501 * 109.47266 * 329.99901 * 22 20 18 26 26 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 27 27 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 28 28 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 29 29 H 1.09007 * 109.46909 * 60.00094 * 3 2 1 30 30 H 1.08998 * 109.47110 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47061 * 300.00284 * 3 2 1 32 32 H 1.08999 * 109.47248 * 309.99990 * 4 2 1 33 33 H 1.09000 * 109.46941 * 70.00310 * 4 2 1 34 34 H 1.08999 * 109.46896 * 299.99976 * 5 4 2 35 35 H 1.09000 * 109.47180 * 60.00227 * 5 4 2 36 36 H 1.09002 * 110.67180 * 278.58973 * 7 6 5 37 37 H 1.09008 * 110.66773 * 41.72815 * 7 6 5 38 38 H 1.09001 * 110.69767 * 80.97884 * 8 7 6 39 39 H 1.09001 * 110.69144 * 204.18416 * 8 7 6 40 40 H 1.09004 * 111.04194 * 17.27387 * 13 11 6 41 41 H 1.09007 * 110.46954 * 254.16744 * 13 11 6 42 42 H 1.08995 * 110.67303 * 203.73069 * 14 13 11 43 43 H 1.09004 * 110.67193 * 80.58364 * 14 13 11 44 44 H 1.09004 * 109.47006 * 310.00094 * 16 15 9 45 45 H 1.09005 * 109.47562 * 69.99337 * 16 15 9 46 46 H 1.08997 * 109.47097 * 299.99869 * 17 16 15 47 47 H 1.09000 * 109.46774 * 59.99681 * 17 16 15 48 48 H 0.97002 * 119.99255 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9954 -0.7660 -1.1377 5 6 3.5044 -0.9554 -0.9704 6 7 4.0309 -1.7209 -2.1083 7 6 3.9941 -0.9146 -3.3549 8 6 5.0138 -1.6343 -4.2722 9 6 6.1276 -2.0608 -3.2898 10 1 6.9755 -1.3765 -3.3203 11 6 5.4509 -2.0737 -1.8978 12 1 5.9379 -1.3868 -1.2056 13 6 5.5421 -3.5675 -1.4434 14 6 6.7146 -4.1214 -2.2904 15 7 6.5341 -3.4475 -3.6015 16 6 7.7796 -3.4686 -4.3801 17 6 8.0356 -4.8865 -4.8946 18 6 9.3131 -4.9079 -5.6938 19 1 9.8850 -4.0008 -5.8223 20 6 9.7512 -6.0854 -6.2618 21 7 10.8663 -6.1042 -6.9589 22 14 8.7609 -7.6539 -6.0413 23 1 7.7763 -7.7772 -7.1461 24 1 9.6756 -8.8236 -6.0607 25 1 8.0437 -7.6080 -4.7418 26 1 -0.3634 -1.0252 0.0708 27 1 -0.3633 0.4513 -0.9233 28 1 -0.3633 0.5740 0.8525 29 1 1.6461 1.8947 0.8901 30 1 3.0851 1.3422 0.0005 31 1 1.6460 1.8948 -0.8900 32 1 1.5089 -1.7407 -1.1757 33 1 1.7975 -0.2247 -2.0628 34 1 3.9909 0.0192 -0.9324 35 1 3.7023 -1.4967 -0.0452 36 1 2.9979 -0.9346 -3.7968 37 1 4.3089 0.1106 -3.1594 38 1 4.5602 -2.5067 -4.7425 39 1 5.4053 -0.9496 -5.0246 40 1 4.6188 -4.1018 -1.6676 41 1 5.7725 -3.6290 -0.3798 42 1 6.6333 -5.2029 -2.3993 43 1 7.6722 -3.8492 -1.8465 44 1 7.6914 -2.7857 -5.2252 45 1 8.6098 -3.1566 -3.7462 46 1 8.1239 -5.5692 -4.0495 47 1 7.2055 -5.1984 -5.5284 48 1 11.1742 -6.9326 -7.3588 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277945094.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:42 Heat of formation + Delta-G solvation = 21.131272 kcal Electronic energy + Delta-G solvation = -22767.990226 eV Core-core repulsion = 19664.791093 eV Total energy + Delta-G solvation = -3103.199132 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.216 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.06228 -37.98246 -36.16412 -33.28078 -32.08169 -31.58679 -29.31493 -27.95779 -27.48229 -27.16280 -24.20859 -23.70952 -21.78364 -21.33097 -20.56322 -19.86726 -19.50898 -16.85674 -16.52304 -15.96112 -15.72640 -15.12478 -14.94021 -14.57044 -14.26268 -14.16445 -14.06240 -13.61526 -13.38375 -12.89429 -12.70964 -12.59814 -12.37815 -12.26875 -12.04122 -11.82663 -11.56719 -11.49753 -11.42109 -11.15269 -10.91445 -10.79536 -10.76940 -10.61122 -10.56380 -10.04207 -9.70007 -9.65233 -9.17753 -8.74812 -8.51036 -8.50101 -7.93648 -6.01813 -3.99756 3.35717 3.41444 3.42345 3.48145 4.04736 4.33302 4.49314 4.52518 4.70314 4.72913 4.81833 4.89621 5.02044 5.08405 5.17486 5.22643 5.24128 5.27019 5.31733 5.33160 5.45267 5.51546 5.52660 5.55350 5.57568 5.69473 5.75991 5.78051 5.90390 5.98522 6.06847 6.10049 6.23321 6.29053 6.39537 6.45315 6.64344 6.64727 6.79080 6.87958 7.02123 7.21551 7.28092 7.56231 7.65628 7.88322 8.55775 9.02162 9.61052 11.11565 Molecular weight = 281.22amu Principal moments of inertia in cm(-1) A = 0.040790 B = 0.002995 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.283895 B = 9346.065722 C = 9517.664138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.549 5.549 3 C 0.020 3.980 4 C 0.061 3.939 5 C 0.050 3.950 6 N -0.504 5.504 7 C 0.035 3.965 8 C -0.109 4.109 9 C 0.056 3.944 10 H 0.059 0.941 11 C 0.060 3.940 12 H 0.063 0.937 13 C -0.105 4.105 14 C 0.037 3.963 15 N -0.506 5.506 16 C 0.062 3.938 17 C -0.004 4.004 18 C -0.521 4.521 19 H 0.069 0.931 20 C 0.067 3.933 21 N -0.905 5.905 22 Si 0.882 3.118 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.264 1.264 26 H 0.070 0.930 27 H 0.024 0.976 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.024 0.976 32 H 0.083 0.917 33 H 0.034 0.966 34 H 0.033 0.967 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.083 0.917 43 H 0.041 0.959 44 H 0.064 0.936 45 H 0.027 0.973 46 H 0.015 0.985 47 H 0.020 0.980 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.984 13.496 14.168 27.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.273 5.273 3 C -0.128 4.128 4 C -0.067 4.067 5 C -0.078 4.078 6 N -0.228 5.228 7 C -0.093 4.093 8 C -0.147 4.147 9 C -0.054 4.054 10 H 0.077 0.923 11 C -0.049 4.049 12 H 0.081 0.919 13 C -0.143 4.143 14 C -0.091 4.091 15 N -0.230 5.230 16 C -0.066 4.066 17 C -0.042 4.042 18 C -0.559 4.559 19 H 0.088 0.912 20 C -0.134 4.134 21 N -0.544 5.544 22 Si 0.710 3.290 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.189 1.189 26 H 0.088 0.912 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.102 0.898 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.057 0.943 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.080 0.920 42 H 0.101 0.899 43 H 0.060 0.940 44 H 0.083 0.917 45 H 0.046 0.954 46 H 0.033 0.967 47 H 0.038 0.962 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.421 12.423 14.132 27.041 hybrid contribution 0.552 0.801 -0.195 0.992 sum -18.868 13.224 13.937 26.928 Atomic orbital electron populations 1.22365 0.87044 1.02425 1.00382 1.61905 1.08020 1.13831 1.43532 1.22455 1.00966 0.88863 1.00535 1.22055 0.95314 0.98596 0.90775 1.22247 0.94343 0.96302 0.94938 1.64740 1.17133 1.38656 1.02282 1.23286 1.00181 0.94768 0.91030 1.22507 0.94895 1.00578 0.96754 1.23164 0.96741 0.91966 0.93499 0.92299 1.23539 0.87787 0.97265 0.96337 0.91943 1.22790 0.99663 0.93749 0.98142 1.23225 0.96450 1.00307 0.89159 1.64974 1.32582 1.10282 1.15192 1.22310 0.87380 1.00856 0.96013 1.19494 0.96908 0.91638 0.96127 1.21098 1.06359 0.96812 1.31650 0.91244 1.25002 0.94843 0.98998 0.94598 1.69923 1.22015 1.27493 1.34988 0.86736 0.80080 0.82849 0.79382 1.20252 1.21560 1.18894 0.91166 0.95697 0.91402 0.91422 0.91202 0.95709 0.89808 0.94820 0.94898 0.90041 0.90285 0.94330 0.89128 0.91556 0.89563 0.91989 0.89865 0.94037 0.91701 0.95449 0.96712 0.96181 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.57 60.07 0.57 0.76 16 2 N -0.55 -4.71 5.02 -251.25 -1.26 -5.97 16 3 C 0.02 0.15 9.40 60.06 0.56 0.71 16 4 C 0.06 0.55 5.01 -3.82 -0.02 0.53 16 5 C 0.05 0.50 4.66 -3.82 -0.02 0.48 16 6 N -0.50 -5.83 4.79 -220.04 -1.05 -6.88 16 7 C 0.04 0.39 5.80 -1.94 -0.01 0.38 16 8 C -0.11 -1.43 6.75 -24.93 -0.17 -1.60 16 9 C 0.06 0.81 3.30 -65.46 -0.22 0.60 16 10 H 0.06 0.87 7.82 -51.93 -0.41 0.46 16 11 C 0.06 0.75 3.47 -64.44 -0.22 0.53 16 12 H 0.06 0.74 7.83 -51.93 -0.41 0.34 16 13 C -0.10 -1.37 6.81 -23.91 -0.16 -1.53 16 14 C 0.04 0.58 5.91 -1.93 -0.01 0.57 16 15 N -0.51 -8.85 4.73 -221.24 -1.05 -9.90 16 16 C 0.06 1.27 4.67 -3.83 -0.02 1.25 16 17 C 0.00 -0.10 4.13 -27.88 -0.12 -0.21 16 18 C -0.52 -15.07 9.66 -34.44 -0.33 -15.40 16 19 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 20 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 21 N -0.91 -28.25 13.96 55.43 0.77 -27.48 16 22 Si 0.88 22.23 27.47 -169.99 -4.67 17.56 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 26 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 27 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 30 H 0.07 0.52 6.30 -51.93 -0.33 0.19 16 31 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.08 0.82 8.06 -51.93 -0.42 0.40 16 33 H 0.03 0.31 7.22 -51.93 -0.37 -0.06 16 34 H 0.03 0.32 6.23 -51.93 -0.32 0.00 16 35 H 0.08 0.85 8.11 -51.93 -0.42 0.43 16 36 H 0.08 0.81 7.74 -51.93 -0.40 0.41 16 37 H 0.04 0.40 7.86 -51.92 -0.41 -0.01 16 38 H 0.09 1.35 7.98 -51.93 -0.41 0.93 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 1.19 8.02 -51.93 -0.42 0.77 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.08 1.39 7.78 -51.93 -0.40 0.99 16 43 H 0.04 0.66 7.82 -51.93 -0.41 0.25 16 44 H 0.06 1.34 8.08 -51.93 -0.42 0.92 16 45 H 0.03 0.57 7.84 -51.93 -0.41 0.16 16 46 H 0.01 0.36 6.42 -51.93 -0.33 0.03 16 47 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 48 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 363.28 15.07 5.47 5.47 Total: -1.00 -30.75 363.28 -11.26 -42.01 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -9.23 Total: -3.76 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -0.25 Total: -11.06 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -2.59 Total: -50.23 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.67 Total: 17.56 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.75 -11.26 -42.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277945094.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.143 kcal (2) G-P(sol) polarization free energy of solvation -30.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds