Wall clock time and date at job start Tue Mar 31 2020 05:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 5 5 C 1.52997 * 109.47056 * 190.00229 * 4 2 1 6 6 N 1.46902 * 109.47180 * 180.02562 * 5 4 2 7 7 C 1.48506 * 111.00230 * 69.86993 * 6 5 4 8 8 C 1.54895 * 103.20784 * 160.15735 * 7 6 5 9 9 C 1.54520 * 103.07723 * 322.57730 * 8 7 6 10 10 H 1.08995 * 111.69456 * 260.24619 * 9 8 7 11 11 C 1.47826 * 110.99918 * 187.29297 * 6 5 4 12 12 H 1.09002 * 111.66359 * 335.96966 * 11 6 5 13 13 C 1.56397 * 108.98614 * 101.56087 * 11 6 5 14 14 C 1.54891 * 103.11076 * 135.85560 * 13 11 6 15 15 N 1.47834 * 108.84566 * 136.49918 * 9 8 7 16 16 C 1.46899 * 110.99789 * 100.59176 * 15 9 8 17 17 C 1.52998 * 109.47267 * 189.99705 * 16 15 9 18 18 C 1.50703 * 109.47192 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00139 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99851 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99903 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00039 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47510 * 89.99965 * 22 20 18 24 24 H 1.48500 * 109.47033 * 210.00180 * 22 20 18 25 25 H 1.48501 * 109.47266 * 329.99901 * 22 20 18 26 26 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 27 27 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 28 28 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 29 29 H 1.09007 * 109.46909 * 60.00094 * 3 2 1 30 30 H 1.08998 * 109.47110 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47061 * 300.00284 * 3 2 1 32 32 H 1.08999 * 109.47248 * 309.99990 * 4 2 1 33 33 H 1.09000 * 109.46941 * 70.00310 * 4 2 1 34 34 H 1.08999 * 109.46896 * 299.99976 * 5 4 2 35 35 H 1.09000 * 109.47180 * 60.00227 * 5 4 2 36 36 H 1.09002 * 110.67180 * 278.58973 * 7 6 5 37 37 H 1.09008 * 110.66773 * 41.72815 * 7 6 5 38 38 H 1.09001 * 110.69767 * 80.97884 * 8 7 6 39 39 H 1.09001 * 110.69144 * 204.18416 * 8 7 6 40 40 H 1.09004 * 111.04194 * 17.27387 * 13 11 6 41 41 H 1.09007 * 110.46954 * 254.16744 * 13 11 6 42 42 H 1.08995 * 110.67303 * 203.73069 * 14 13 11 43 43 H 1.09004 * 110.67193 * 80.58364 * 14 13 11 44 44 H 1.09004 * 109.47006 * 310.00094 * 16 15 9 45 45 H 1.09005 * 109.47562 * 69.99337 * 16 15 9 46 46 H 1.08997 * 109.47097 * 299.99869 * 17 16 15 47 47 H 1.09000 * 109.46774 * 59.99681 * 17 16 15 48 48 H 0.97002 * 119.99255 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9954 -0.7660 -1.1377 5 6 3.5044 -0.9554 -0.9704 6 7 4.0309 -1.7209 -2.1083 7 6 3.9941 -0.9146 -3.3549 8 6 5.0138 -1.6343 -4.2722 9 6 6.1276 -2.0608 -3.2898 10 1 6.9755 -1.3765 -3.3203 11 6 5.4509 -2.0737 -1.8978 12 1 5.9379 -1.3868 -1.2056 13 6 5.5421 -3.5675 -1.4434 14 6 6.7146 -4.1214 -2.2904 15 7 6.5341 -3.4475 -3.6015 16 6 7.7796 -3.4686 -4.3801 17 6 8.0356 -4.8865 -4.8946 18 6 9.3131 -4.9079 -5.6938 19 1 9.8850 -4.0008 -5.8223 20 6 9.7512 -6.0854 -6.2618 21 7 10.8663 -6.1042 -6.9589 22 14 8.7609 -7.6539 -6.0413 23 1 7.7763 -7.7772 -7.1461 24 1 9.6756 -8.8236 -6.0607 25 1 8.0437 -7.6080 -4.7418 26 1 -0.3634 -1.0252 0.0708 27 1 -0.3633 0.4513 -0.9233 28 1 -0.3633 0.5740 0.8525 29 1 1.6461 1.8947 0.8901 30 1 3.0851 1.3422 0.0005 31 1 1.6460 1.8948 -0.8900 32 1 1.5089 -1.7407 -1.1757 33 1 1.7975 -0.2247 -2.0628 34 1 3.9909 0.0192 -0.9324 35 1 3.7023 -1.4967 -0.0452 36 1 2.9979 -0.9346 -3.7968 37 1 4.3089 0.1106 -3.1594 38 1 4.5602 -2.5067 -4.7425 39 1 5.4053 -0.9496 -5.0246 40 1 4.6188 -4.1018 -1.6676 41 1 5.7725 -3.6290 -0.3798 42 1 6.6333 -5.2029 -2.3993 43 1 7.6722 -3.8492 -1.8465 44 1 7.6914 -2.7857 -5.2252 45 1 8.6098 -3.1566 -3.7462 46 1 8.1239 -5.5692 -4.0495 47 1 7.2055 -5.1984 -5.5284 48 1 11.1742 -6.9326 -7.3588 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277945094.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:42 Heat of formation + Delta-G solvation = -1.015906 kcal Electronic energy + Delta-G solvation = -22768.950599 eV Core-core repulsion = 19664.791093 eV Total energy + Delta-G solvation = -3104.159506 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.216 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.13404 -38.76278 -37.28316 -35.24928 -33.29829 -33.04178 -30.74627 -28.61318 -28.48455 -28.23877 -25.90352 -24.56047 -22.93601 -22.53270 -21.55242 -21.29407 -20.62599 -18.98209 -17.45536 -16.95091 -16.48204 -16.41571 -15.93817 -15.82709 -15.74392 -15.21075 -15.15358 -14.81982 -14.63199 -14.46009 -14.02757 -13.57507 -13.47557 -13.26840 -13.08446 -12.92229 -12.62783 -12.53732 -12.49222 -12.43029 -12.31459 -11.90758 -11.84825 -11.73023 -11.68706 -11.63241 -11.61151 -11.42152 -11.31567 -10.76960 -9.48669 -9.32184 -9.27149 -8.30809 -6.34918 1.36698 1.37363 1.50725 2.36073 2.67937 3.04861 3.05609 3.24685 3.50977 3.68598 3.94830 4.05806 4.11307 4.23996 4.25983 4.28409 4.31849 4.37145 4.44658 4.47625 4.54017 4.56777 4.58294 4.66988 4.71222 4.73410 4.89364 4.92632 4.95408 4.98441 5.00635 5.02721 5.03273 5.05575 5.09487 5.25345 5.27076 5.36642 5.45970 5.61625 5.88130 5.99729 6.07386 6.09999 6.16647 6.23422 6.28954 6.72379 7.30012 8.85828 Molecular weight = 281.22amu Principal moments of inertia in cm(-1) A = 0.040790 B = 0.002995 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.283895 B = 9346.065722 C = 9517.664138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.561 5.561 3 C 0.020 3.980 4 C 0.068 3.932 5 C 0.057 3.943 6 N -0.511 5.511 7 C 0.044 3.956 8 C -0.108 4.108 9 C 0.050 3.950 10 H 0.057 0.943 11 C 0.067 3.933 12 H 0.076 0.924 13 C -0.094 4.094 14 C 0.031 3.969 15 N -0.515 5.515 16 C 0.076 3.924 17 C 0.005 3.995 18 C -0.532 4.532 19 H 0.032 0.968 20 C 0.007 3.993 21 N -0.950 5.950 22 Si 0.952 3.048 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.249 1.249 26 H 0.070 0.930 27 H 0.026 0.974 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.026 0.974 32 H 0.076 0.924 33 H 0.033 0.967 34 H 0.039 0.961 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.051 0.949 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.040 0.960 44 H 0.057 0.943 45 H 0.020 0.980 46 H 0.017 0.983 47 H 0.017 0.983 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.198 13.750 15.779 29.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.285 5.285 3 C -0.128 4.128 4 C -0.061 4.061 5 C -0.072 4.072 6 N -0.236 5.236 7 C -0.083 4.083 8 C -0.147 4.147 9 C -0.059 4.059 10 H 0.075 0.925 11 C -0.042 4.042 12 H 0.093 0.907 13 C -0.132 4.132 14 C -0.097 4.097 15 N -0.239 5.239 16 C -0.052 4.052 17 C -0.033 4.033 18 C -0.571 4.571 19 H 0.050 0.950 20 C -0.190 4.190 21 N -0.591 5.591 22 Si 0.776 3.224 23 H -0.193 1.193 24 H -0.208 1.208 25 H -0.173 1.173 26 H 0.089 0.911 27 H 0.045 0.955 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.058 0.942 44 H 0.076 0.924 45 H 0.038 0.962 46 H 0.035 0.965 47 H 0.036 0.964 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.655 12.699 15.759 29.640 hybrid contribution 1.279 0.808 -0.704 1.668 sum -20.376 13.507 15.055 28.710 Atomic orbital electron populations 1.22402 0.86168 1.02740 1.00926 1.61918 1.08942 1.14472 1.43192 1.22476 1.00873 0.88336 1.01082 1.21935 0.94695 0.98378 0.91052 1.22205 0.94773 0.96194 0.94003 1.64728 1.16307 1.39513 1.03048 1.23233 0.99980 0.94897 0.90219 1.22466 0.94971 1.00210 0.97019 1.23277 0.97190 0.90066 0.95415 0.92537 1.23471 0.88408 0.97275 0.95087 0.90653 1.22706 0.97973 0.93714 0.98824 1.23289 0.97741 0.99742 0.88907 1.64915 1.30274 1.12593 1.16147 1.21967 0.88874 0.98143 0.96201 1.19348 0.94392 0.94196 0.95386 1.21413 1.07765 0.95626 1.32290 0.94990 1.25970 0.95957 1.02956 0.94156 1.70066 1.23939 1.28789 1.36265 0.85624 0.78625 0.78009 0.80168 1.19267 1.20787 1.17269 0.91096 0.95533 0.90385 0.90480 0.91333 0.95575 0.90543 0.94909 0.94331 0.90345 0.89309 0.93115 0.90979 0.91065 0.90142 0.89798 0.90919 0.94189 0.92416 0.96192 0.96498 0.96422 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.57 127.69 1.22 1.53 16 2 N -0.56 -8.40 5.02 -948.82 -4.76 -13.16 16 3 C 0.02 0.25 9.40 127.69 1.20 1.45 16 4 C 0.07 1.09 5.01 86.30 0.43 1.52 16 5 C 0.06 0.98 4.66 86.30 0.40 1.38 16 6 N -0.51 -10.63 4.79 -850.06 -4.07 -14.70 16 7 C 0.04 0.88 5.80 86.64 0.50 1.38 16 8 C -0.11 -2.71 6.75 31.76 0.21 -2.50 16 9 C 0.05 1.39 3.30 45.86 0.15 1.54 16 10 H 0.06 1.61 7.82 -2.39 -0.02 1.59 16 11 C 0.07 1.54 3.47 46.53 0.16 1.70 16 12 H 0.08 1.57 7.83 -2.39 -0.02 1.55 16 13 C -0.09 -2.25 6.81 32.42 0.22 -2.03 16 14 C 0.03 0.95 5.91 86.64 0.51 1.47 16 15 N -0.52 -17.70 4.73 -853.86 -4.04 -21.74 16 16 C 0.08 3.17 4.67 86.30 0.40 3.57 16 17 C 0.00 0.23 4.13 29.85 0.12 0.35 16 18 C -0.53 -31.60 9.66 25.60 0.25 -31.35 16 19 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16 20 C 0.01 0.39 5.47 84.65 0.46 0.85 16 21 N -0.95 -60.57 13.96 21.45 0.30 -60.27 16 22 Si 0.95 45.74 27.47 68.60 1.88 47.62 16 23 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 25 H -0.25 -11.25 6.54 99.48 0.65 -10.60 16 26 H 0.07 0.82 8.12 -2.39 -0.02 0.80 16 27 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.07 0.86 6.30 -2.39 -0.02 0.84 16 31 H 0.03 0.31 8.14 -2.39 -0.02 0.30 16 32 H 0.08 1.34 8.06 -2.39 -0.02 1.32 16 33 H 0.03 0.53 7.22 -2.39 -0.02 0.52 16 34 H 0.04 0.64 6.23 -2.39 -0.01 0.62 16 35 H 0.08 1.43 8.11 -2.39 -0.02 1.41 16 36 H 0.09 1.61 7.74 -2.39 -0.02 1.59 16 37 H 0.05 0.90 7.86 -2.38 -0.02 0.88 16 38 H 0.07 2.09 7.98 -2.39 -0.02 2.07 16 39 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 40 H 0.08 2.06 8.02 -2.38 -0.02 2.04 16 41 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 42 H 0.07 2.36 7.78 -2.39 -0.02 2.34 16 43 H 0.04 1.23 7.82 -2.38 -0.02 1.21 16 44 H 0.06 2.44 8.08 -2.39 -0.02 2.42 16 45 H 0.02 0.84 7.84 -2.38 -0.02 0.82 16 46 H 0.02 0.82 6.42 -2.39 -0.02 0.80 16 47 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 48 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -66.35 363.28 -3.60 -69.95 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.83 Total: 11.44 kcal Atomic # 6 Polarization: -25.40 SS G_CDS: 6.26 Total: -19.14 kcal Atomic # 7 Polarization: -97.29 SS G_CDS: -12.57 Total: -109.87 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.88 Total: 47.62 kcal Total: -66.35 -3.60 -69.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277945094.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.937 kcal (2) G-P(sol) polarization free energy of solvation -66.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds