Wall clock time and date at job start Tue Mar 31 2020 06:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47554 * 2 1 4 4 N 1.46892 * 109.47555 * 180.27761 * 3 2 1 5 5 C 1.46898 * 110.99896 * 63.90437 * 4 3 2 6 6 C 1.52997 * 109.47425 * 72.82504 * 5 4 3 7 7 H 1.08998 * 109.46641 * 302.85497 * 6 5 4 8 8 C 1.52999 * 109.47454 * 182.85349 * 6 5 4 9 9 C 1.53001 * 109.46879 * 62.85201 * 6 5 4 10 10 C 1.50703 * 109.47005 * 185.00293 * 9 6 5 11 11 H 1.08002 * 119.99950 * 359.97438 * 10 9 6 12 12 C 1.37874 * 120.00412 * 180.02562 * 10 9 6 13 13 N 1.31511 * 120.00331 * 180.27590 * 12 10 9 14 14 Si 1.86802 * 119.99692 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47361 * 90.00153 * 14 12 10 16 16 H 1.48506 * 109.47002 * 210.00056 * 14 12 10 17 17 H 1.48499 * 109.47137 * 329.99740 * 14 12 10 18 18 C 1.46901 * 111.00047 * 299.95092 * 4 3 2 19 19 C 1.53000 * 109.47282 * 288.27033 * 18 4 3 20 20 C 1.53002 * 109.47196 * 295.03505 * 19 18 4 21 21 C 1.53001 * 109.46899 * 179.97438 * 20 19 18 22 22 C 1.52997 * 109.47389 * 60.00297 * 21 20 19 23 23 C 1.53002 * 109.46858 * 299.99728 * 22 21 20 24 24 C 1.52996 * 109.47482 * 175.03199 * 19 18 4 25 25 H 1.08998 * 109.47091 * 300.00107 * 1 2 3 26 26 H 1.09007 * 109.46879 * 59.99766 * 1 2 3 27 27 H 1.08997 * 109.47081 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47091 * 239.99893 * 2 1 3 29 29 H 1.09007 * 109.46879 * 120.00234 * 2 1 3 30 30 H 1.09007 * 109.46602 * 60.27660 * 3 2 1 31 31 H 1.09005 * 109.47276 * 300.28436 * 3 2 1 32 32 H 1.08999 * 109.47075 * 312.81982 * 5 4 3 33 33 H 1.09007 * 109.46844 * 192.82545 * 5 4 3 34 34 H 1.08996 * 109.47215 * 174.52708 * 8 6 5 35 35 H 1.08997 * 109.47050 * 294.53231 * 8 6 5 36 36 H 1.08998 * 109.46509 * 54.53097 * 8 6 5 37 37 H 1.08995 * 109.47085 * 65.00795 * 9 6 5 38 38 H 1.08999 * 109.47390 * 305.00046 * 9 6 5 39 39 H 0.97002 * 120.00312 * 179.71977 * 13 12 10 40 40 H 1.08999 * 109.47096 * 48.26809 * 18 4 3 41 41 H 1.09000 * 109.47509 * 168.27344 * 18 4 3 42 42 H 1.09001 * 109.47163 * 55.03368 * 19 18 4 43 43 H 1.09001 * 109.46953 * 299.99992 * 20 19 18 44 44 H 1.09005 * 109.46797 * 60.00136 * 20 19 18 45 45 H 1.09001 * 109.47079 * 299.99568 * 21 20 19 46 46 H 1.09001 * 109.47151 * 180.02562 * 21 20 19 47 47 H 1.08996 * 109.47375 * 180.02562 * 22 21 20 48 48 H 1.09001 * 109.47127 * 59.99363 * 22 21 20 49 49 H 1.09001 * 109.46953 * 299.99741 * 23 22 21 50 50 H 1.09005 * 109.47214 * 179.97438 * 23 22 21 51 51 H 1.09001 * 109.47221 * 300.00681 * 24 19 18 52 52 H 1.09001 * 109.47261 * 60.00167 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5090 1.4424 -0.0067 5 6 4.0298 0.8412 -1.2417 6 6 3.8096 1.8041 -2.4101 7 1 2.7486 2.0401 -2.4912 8 6 4.2871 1.1492 -3.7077 9 6 4.6011 3.0906 -2.1667 10 6 4.2885 4.0861 -3.2542 11 1 3.5950 3.8268 -4.0405 12 6 4.8886 5.3273 -3.2460 13 7 4.6117 6.1979 -4.1919 14 14 6.0898 5.7749 -1.8872 15 1 7.4644 5.3880 -2.2943 16 1 6.0392 7.2391 -1.6443 17 1 5.7206 5.0537 -0.6427 18 6 4.0409 0.7558 1.1781 19 6 3.8071 1.6220 2.4174 20 6 4.6197 2.9130 2.2980 21 6 4.3854 3.7794 3.5371 22 6 4.8260 3.0132 4.7860 23 6 4.0134 1.7223 4.9053 24 6 4.2480 0.8555 3.6659 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6808 1.9548 0.8925 31 1 1.6726 1.9578 -0.8875 32 1 3.5070 -0.0947 -1.4387 33 1 5.0961 0.6449 -1.1286 34 1 4.0420 1.7939 -4.5517 35 1 5.3662 1.0017 -3.6645 36 1 3.7932 0.1854 -3.8313 37 1 5.6680 2.8677 -2.1741 38 1 4.3242 3.5102 -1.1996 39 1 5.0308 7.0727 -4.1839 40 1 3.5330 -0.2006 1.3022 41 1 5.1099 0.5857 1.0501 42 1 2.7476 1.8656 2.4959 43 1 5.6792 2.6694 2.2195 44 1 4.3054 3.4591 1.4085 45 1 3.3258 4.0229 3.6151 46 1 4.9638 4.6993 3.4519 47 1 4.6586 3.6303 5.6687 48 1 5.8855 2.7697 4.7079 49 1 2.9539 1.9658 4.9834 50 1 4.3276 1.1761 5.7948 51 1 3.6692 -0.0642 3.7510 52 1 5.3076 0.6120 3.5875 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308615677.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:31 Heat of formation + Delta-G solvation = -45.197139 kcal Electronic energy + Delta-G solvation = -24044.378821 eV Core-core repulsion = 21041.843816 eV Total energy + Delta-G solvation = -3002.535005 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.32403 -37.61839 -34.80566 -32.87757 -32.12896 -30.81995 -30.53342 -27.61855 -26.34084 -25.97409 -23.30622 -22.69258 -22.30965 -21.53489 -19.98005 -19.37880 -18.56497 -16.65081 -15.87868 -15.51808 -15.19253 -14.51321 -14.33657 -14.15223 -14.04918 -13.85946 -13.47125 -13.33112 -12.91095 -12.47742 -12.32889 -12.09318 -12.00576 -11.89871 -11.62792 -11.55860 -11.44908 -11.29284 -11.21362 -11.05973 -10.95500 -10.84198 -10.77076 -10.53361 -10.41439 -10.13010 -9.95238 -9.82048 -9.61064 -9.57719 -9.27648 -8.86820 -8.38744 -7.74375 -5.90418 -3.85399 3.41187 3.48448 3.56688 4.21432 4.59373 4.68947 4.81525 4.85286 5.00981 5.03851 5.16434 5.30940 5.36710 5.43326 5.45208 5.49112 5.54828 5.57653 5.60634 5.66140 5.67690 5.73058 5.76950 5.85902 5.90494 5.95694 5.99321 6.04674 6.08540 6.11868 6.18052 6.18258 6.25093 6.26758 6.27033 6.39398 6.40347 6.42879 6.55066 6.62960 6.74329 6.91514 7.04263 7.18901 7.48090 7.51914 7.60654 7.78365 7.99141 8.70418 9.16098 9.74366 11.23377 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.011987 B = 0.006146 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.245451 B = 4554.749500 C = 6207.513277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.165 4.165 3 C 0.053 3.947 4 N -0.523 5.523 5 C 0.057 3.943 6 C -0.072 4.072 7 H 0.060 0.940 8 C -0.133 4.133 9 C 0.000 4.000 10 C -0.509 4.509 11 H 0.069 0.931 12 C 0.064 3.936 13 N -0.911 5.911 14 Si 0.875 3.125 15 H -0.282 1.282 16 H -0.292 1.292 17 H -0.259 1.259 18 C 0.054 3.946 19 C -0.079 4.079 20 C -0.108 4.108 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.116 4.116 24 C -0.113 4.113 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.027 0.973 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.044 0.956 36 H 0.029 0.971 37 H 0.002 0.998 38 H 0.033 0.967 39 H 0.260 0.740 40 H 0.034 0.966 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.082 0.918 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.055 0.945 48 H 0.059 0.941 49 H 0.059 0.941 50 H 0.056 0.944 51 H 0.055 0.945 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.252 -12.770 16.288 20.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.204 4.204 3 C -0.075 4.075 4 N -0.245 5.245 5 C -0.070 4.070 6 C -0.091 4.091 7 H 0.079 0.921 8 C -0.191 4.191 9 C -0.037 4.037 10 C -0.548 4.548 11 H 0.087 0.913 12 C -0.136 4.136 13 N -0.551 5.551 14 Si 0.703 3.297 15 H -0.208 1.208 16 H -0.219 1.219 17 H -0.183 1.183 18 C -0.074 4.074 19 C -0.097 4.097 20 C -0.146 4.146 21 C -0.159 4.159 22 C -0.156 4.156 23 C -0.154 4.154 24 C -0.152 4.152 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.045 0.955 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.020 0.980 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.100 0.900 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.077 0.923 49 H 0.078 0.922 50 H 0.074 0.926 51 H 0.074 0.926 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.031 -12.095 16.245 20.479 hybrid contribution 0.451 -0.472 0.553 0.856 sum -2.580 -12.568 16.799 21.137 Atomic orbital electron populations 1.21661 0.95722 1.01091 1.01880 1.22203 0.96396 0.99998 1.01808 1.22270 0.87664 0.94573 1.02992 1.62090 1.06782 1.54023 1.01555 1.22353 0.98921 0.95560 0.90181 1.21000 1.00548 0.95967 0.91605 0.92141 1.21700 1.00054 0.98372 0.98971 1.19519 0.94028 0.92367 0.97820 1.21250 1.26033 0.97681 1.09792 0.91332 1.25001 0.96595 0.96452 0.95553 1.69926 1.44571 1.06818 1.33788 0.86839 0.81698 0.77164 0.84038 1.20792 1.21870 1.18299 1.22231 0.99691 0.94872 0.90563 1.21115 1.00225 0.95526 0.92879 1.21497 0.99477 0.95498 0.98121 1.21561 1.01110 0.98350 0.94839 1.21540 0.99785 0.96391 0.97920 1.21503 1.00174 0.96257 0.97425 1.21568 1.01193 0.97847 0.94544 0.92922 0.92518 0.93316 0.91780 0.92174 0.91156 0.90019 0.95492 0.91841 0.91643 0.93678 0.95211 0.97973 0.94856 0.93081 0.94825 0.91448 0.91333 0.92700 0.89957 0.92301 0.92318 0.92633 0.92263 0.92238 0.92561 0.92584 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 37.16 0.37 -1.15 16 2 C -0.17 -1.94 5.32 -26.73 -0.14 -2.09 16 3 C 0.05 0.74 5.07 -3.83 -0.02 0.72 16 4 N -0.52 -7.96 3.35 -234.63 -0.79 -8.75 16 5 C 0.06 0.92 4.27 -3.83 -0.02 0.91 16 6 C -0.07 -1.42 2.34 -90.62 -0.21 -1.63 16 7 H 0.06 1.23 6.63 -51.93 -0.34 0.89 16 8 C -0.13 -2.48 8.91 37.16 0.33 -2.15 16 9 C 0.00 0.00 3.45 -27.88 -0.10 -0.10 16 10 C -0.51 -14.55 9.03 -34.44 -0.31 -14.86 16 11 H 0.07 2.10 7.30 -52.49 -0.38 1.72 16 12 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 13 N -0.91 -28.66 13.96 55.43 0.77 -27.89 16 14 Si 0.87 22.39 27.47 -169.99 -4.67 17.72 16 15 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 16 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 17 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 18 C 0.05 0.70 4.20 -3.82 -0.02 0.69 16 19 C -0.08 -0.95 2.19 -90.62 -0.20 -1.14 16 20 C -0.11 -1.50 5.09 -26.73 -0.14 -1.64 16 21 C -0.12 -1.47 5.92 -26.73 -0.16 -1.63 16 22 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 23 C -0.12 -1.10 5.92 -26.71 -0.16 -1.26 16 24 C -0.11 -1.15 5.21 -26.71 -0.14 -1.29 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.80 6.24 -51.93 -0.32 0.48 16 29 H 0.06 0.68 6.18 -51.92 -0.32 0.36 16 30 H 0.07 0.94 6.60 -51.92 -0.34 0.60 16 31 H 0.08 1.29 6.56 -51.93 -0.34 0.95 16 32 H 0.03 0.40 5.89 -51.93 -0.31 0.09 16 33 H 0.06 1.03 7.71 -51.93 -0.40 0.63 16 34 H 0.06 1.36 7.12 -51.93 -0.37 0.99 16 35 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.00 0.05 7.57 -51.93 -0.39 -0.34 16 38 H 0.03 0.82 6.61 -51.93 -0.34 0.48 16 39 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 40 H 0.03 0.40 5.77 -51.93 -0.30 0.10 16 41 H 0.07 0.90 7.72 -51.93 -0.40 0.49 16 42 H 0.07 0.85 6.58 -51.93 -0.34 0.51 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.08 1.40 7.75 -51.93 -0.40 1.00 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 52 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 378.29 15.07 5.70 5.70 Total: -1.00 -29.90 378.29 -10.54 -40.44 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -10.40 Total: -1.02 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: -1.16 Total: -26.20 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: -0.01 Total: -36.63 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.67 Total: 17.72 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.90 -10.54 -40.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308615677.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.761 kcal (2) G-P(sol) polarization free energy of solvation -29.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds