Wall clock time and date at job start Tue Mar 31 2020 06:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47154 * 2 1 4 4 C 1.53002 * 109.47177 * 120.00424 * 2 1 3 5 5 H 1.08999 * 109.62423 * 300.75116 * 4 2 1 6 6 C 1.54241 * 109.79288 * 180.26292 * 4 2 1 7 7 C 1.45537 * 112.41018 * 160.20346 * 6 4 2 8 8 C 1.54362 * 112.33848 * 61.96579 * 7 6 4 9 9 C 1.50477 * 108.45940 * 279.90569 * 8 7 6 10 10 H 1.09004 * 108.87673 * 333.54178 * 9 8 7 11 11 N 1.46896 * 108.87870 * 214.99429 * 9 8 7 12 12 C 1.46908 * 110.99920 * 83.55961 * 11 9 8 13 13 C 1.53000 * 109.47022 * 180.02562 * 12 11 9 14 14 H 1.09002 * 109.47530 * 54.99841 * 13 12 11 15 15 C 1.52999 * 109.47203 * 295.00060 * 13 12 11 16 16 C 1.52994 * 109.46981 * 174.99728 * 13 12 11 17 17 C 1.50706 * 109.47130 * 184.99541 * 16 13 12 18 18 H 1.08004 * 119.99936 * 0.02562 * 17 16 13 19 19 C 1.37882 * 120.00040 * 179.97438 * 17 16 13 20 20 N 1.31516 * 120.00005 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99921 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46773 * 270.00086 * 21 19 17 23 23 H 1.48498 * 109.47262 * 29.99857 * 21 19 17 24 24 H 1.48496 * 109.47169 * 150.00434 * 21 19 17 25 25 C 1.54066 * 112.41806 * 94.26403 * 9 8 7 26 26 C 1.50471 * 109.63188 * 61.13780 * 4 2 1 27 27 H 1.08994 * 109.47026 * 293.44273 * 1 2 3 28 28 H 1.08997 * 109.47128 * 53.44672 * 1 2 3 29 29 H 1.09007 * 109.47096 * 173.44527 * 1 2 3 30 30 H 1.09006 * 109.47297 * 239.99946 * 2 1 3 31 31 H 1.09005 * 109.47411 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47256 * 300.00195 * 3 2 1 33 33 H 1.09000 * 109.46726 * 60.00429 * 3 2 1 34 34 H 1.08999 * 108.89078 * 280.95894 * 6 4 2 35 35 H 1.09003 * 108.89312 * 39.54510 * 6 4 2 36 36 H 1.09003 * 108.89550 * 182.69383 * 7 6 4 37 37 H 1.09000 * 108.89385 * 301.27857 * 7 6 4 38 38 H 1.09003 * 109.60543 * 160.25268 * 8 7 6 39 39 H 1.09002 * 109.72192 * 39.62955 * 8 7 6 40 40 H 1.00899 * 110.99963 * 207.51218 * 11 9 8 41 41 H 1.08999 * 109.46954 * 60.00034 * 12 11 9 42 42 H 1.08999 * 109.46957 * 299.99915 * 12 11 9 43 43 H 1.08998 * 109.47360 * 59.99642 * 15 13 12 44 44 H 1.09000 * 109.47302 * 180.02562 * 15 13 12 45 45 H 1.09010 * 109.47005 * 300.00200 * 15 13 12 46 46 H 1.09001 * 109.47265 * 65.00490 * 16 13 12 47 47 H 1.08998 * 109.47368 * 304.99972 * 16 13 12 48 48 H 0.97004 * 119.99605 * 359.97438 * 20 19 17 49 49 H 1.09005 * 108.81307 * 79.10252 * 25 9 8 50 50 H 1.09001 * 108.81124 * 197.37275 * 25 9 8 51 51 H 1.08999 * 108.87637 * 93.28012 * 26 4 2 52 52 H 1.09003 * 108.79511 * 334.78650 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6671 -0.2174 2.1408 6 6 3.5824 -0.7199 1.2600 7 6 4.1281 -0.9599 2.5877 8 6 3.7288 -2.3429 3.1450 9 6 2.3280 -2.2518 3.6869 10 1 2.1314 -1.2219 3.9850 11 7 2.2182 -3.1174 4.8686 12 6 2.7021 -2.4284 6.0725 13 6 2.5729 -3.3596 7.2796 14 1 3.0944 -4.2946 7.0748 15 6 1.0940 -3.6482 7.5452 16 6 3.1906 -2.6899 8.5087 17 6 3.1741 -3.6535 9.6674 18 1 2.7644 -4.6446 9.5397 19 6 3.6830 -3.2701 10.8902 20 7 4.1824 -2.0634 11.0455 21 14 3.6632 -4.4648 12.3261 22 1 2.3955 -4.3074 13.0834 23 1 3.7649 -5.8552 11.8147 24 1 4.8132 -4.1813 13.2217 25 6 1.2692 -2.6822 2.6537 26 6 1.5636 -2.1486 1.2388 27 1 -0.3633 0.4088 0.9428 28 1 -0.3633 0.6120 -0.8255 29 1 -0.3634 -1.0210 -0.1173 30 1 1.8934 -0.5139 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 3.9408 -1.4973 0.5852 35 1 3.9369 0.2473 0.9037 36 1 5.2154 -0.8993 2.5386 37 1 3.7622 -0.1878 3.2645 38 1 4.4130 -2.6263 3.9448 39 1 3.7654 -3.0853 2.3477 40 1 1.2706 -3.4407 4.9933 41 1 2.1078 -1.5303 6.2407 42 1 3.7478 -2.1522 5.9375 43 1 0.6539 -4.1252 6.6695 44 1 1.0019 -4.3112 8.4055 45 1 0.5725 -2.7131 7.7501 46 1 2.6140 -1.8016 8.7668 47 1 4.2191 -2.4041 8.2884 48 1 4.1930 -1.4433 10.2997 49 1 1.2346 -3.7711 2.6186 50 1 0.2952 -2.3119 2.9735 51 1 2.3296 -2.7728 0.7788 52 1 0.6535 -2.2107 0.6420 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001621271997.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:24 Heat of formation + Delta-G solvation = -54.669638 kcal Electronic energy + Delta-G solvation = -23156.553670 eV Core-core repulsion = 20153.607907 eV Total energy + Delta-G solvation = -3002.945763 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.90833 -37.23114 -35.41513 -33.64085 -32.49444 -31.55540 -29.17851 -27.60463 -26.47673 -25.45534 -24.98647 -23.38784 -22.02871 -21.08698 -20.40106 -19.38478 -18.84762 -16.70566 -16.32178 -15.29948 -15.05911 -14.82779 -14.76096 -14.11045 -13.97027 -13.70633 -13.59571 -13.44671 -13.22528 -12.77132 -12.62849 -12.44714 -12.13078 -11.94661 -11.87105 -11.63711 -11.63000 -11.45093 -11.10764 -11.04155 -10.86302 -10.71672 -10.67784 -10.50509 -10.41046 -10.20538 -10.16558 -10.09182 -9.99073 -9.78725 -9.39701 -8.43541 -8.26640 -8.12234 -6.29583 -3.97338 3.46420 3.50455 3.66025 4.28249 4.36193 4.48282 4.59202 4.63426 4.75146 4.90181 5.04684 5.11870 5.17483 5.29100 5.32169 5.35660 5.42167 5.44275 5.46875 5.54452 5.58268 5.61814 5.70120 5.74723 5.77494 5.80138 5.89512 5.91984 5.95546 5.99896 6.05685 6.07040 6.11230 6.17410 6.21825 6.24576 6.36393 6.37499 6.41244 6.46030 6.54794 6.87759 7.05508 7.07600 7.39349 7.46943 7.62815 7.72358 8.30560 8.54040 8.95944 9.74127 11.10937 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.032886 B = 0.002845 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.233887 B = 9839.796890 C =10098.963100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 C -0.150 4.150 4 C -0.081 4.081 5 H 0.071 0.929 6 C -0.115 4.115 7 C -0.120 4.120 8 C -0.106 4.106 9 C 0.090 3.910 10 H 0.037 0.963 11 N -0.689 5.689 12 C 0.065 3.935 13 C -0.077 4.077 14 H 0.066 0.934 15 C -0.133 4.133 16 C 0.015 3.985 17 C -0.593 4.593 18 H 0.050 0.950 19 C 0.012 3.988 20 N -0.917 5.917 21 Si 1.070 2.930 22 H -0.289 1.289 23 H -0.289 1.289 24 H -0.285 1.285 25 C -0.118 4.118 26 C -0.113 4.113 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.336 0.664 41 H 0.020 0.980 42 H 0.065 0.935 43 H 0.033 0.967 44 H 0.063 0.937 45 H 0.039 0.961 46 H 0.004 0.996 47 H 0.005 0.995 48 H 0.268 0.732 49 H 0.068 0.932 50 H 0.053 0.947 51 H 0.061 0.939 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.816 3.588 -24.105 25.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 C -0.208 4.208 4 C -0.099 4.099 5 H 0.089 0.911 6 C -0.152 4.152 7 C -0.158 4.158 8 C -0.144 4.144 9 C -0.020 4.020 10 H 0.054 0.946 11 N -0.321 5.321 12 C -0.064 4.064 13 C -0.096 4.096 14 H 0.084 0.916 15 C -0.190 4.190 16 C -0.023 4.023 17 C -0.631 4.631 18 H 0.068 0.932 19 C -0.191 4.191 20 N -0.554 5.554 21 Si 0.898 3.102 22 H -0.216 1.216 23 H -0.215 1.215 24 H -0.211 1.211 25 C -0.156 4.156 26 C -0.151 4.151 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.155 0.845 41 H 0.039 0.961 42 H 0.084 0.916 43 H 0.052 0.948 44 H 0.082 0.918 45 H 0.058 0.942 46 H 0.022 0.978 47 H 0.024 0.976 48 H 0.078 0.922 49 H 0.086 0.914 50 H 0.072 0.928 51 H 0.079 0.921 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.809 3.100 -22.621 23.333 hybrid contribution -1.175 0.853 -1.383 2.005 sum -5.984 3.952 -24.004 25.052 Atomic orbital electron populations 1.21911 0.95448 1.01634 1.01670 1.21138 0.95494 0.96066 0.98233 1.21929 1.01265 0.96047 1.01518 1.20995 0.95275 0.95855 0.97813 0.91054 1.20638 0.95000 1.01765 0.97809 1.20508 1.00449 0.97814 0.97062 1.21403 0.96268 0.96170 1.00531 1.21347 0.95179 0.94842 0.90601 0.94551 1.60770 1.28222 1.40014 1.03069 1.22161 0.99551 0.95234 0.89426 1.21076 0.96118 0.98527 0.93880 0.91567 1.21724 0.96302 1.00739 1.00232 1.19236 0.94716 0.95932 0.92383 1.22068 1.43654 1.00641 0.96752 0.93190 1.25825 0.93708 0.99106 1.00501 1.70750 1.43293 1.06121 1.35219 0.83536 0.76661 0.74621 0.75341 1.21574 1.21502 1.21078 1.22065 0.97823 1.01291 0.94459 1.21435 1.01383 0.95794 0.96483 0.92702 0.92949 0.92403 0.91426 0.92231 0.93028 0.92748 0.92375 0.91977 0.92330 0.92430 0.90983 0.91745 0.84521 0.96148 0.91639 0.94807 0.91789 0.94210 0.97771 0.97649 0.92164 0.91351 0.92776 0.92077 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.80 37.16 0.33 -0.75 16 2 C -0.09 -0.68 2.47 -90.62 -0.22 -0.91 16 3 C -0.15 -1.09 8.90 37.16 0.33 -0.76 16 4 C -0.08 -0.70 1.44 -91.23 -0.13 -0.83 16 5 H 0.07 0.72 6.97 -51.93 -0.36 0.35 16 6 C -0.11 -1.02 4.63 -29.60 -0.14 -1.16 16 7 C -0.12 -1.27 5.27 -29.54 -0.16 -1.42 16 8 C -0.11 -1.29 5.19 -27.28 -0.14 -1.43 16 9 C 0.09 1.13 2.03 -68.42 -0.14 0.99 16 10 H 0.04 0.49 6.24 -51.93 -0.32 0.17 16 11 N -0.69 -10.35 6.19 -107.47 -0.67 -11.02 16 12 C 0.06 1.16 4.85 -3.82 -0.02 1.14 16 13 C -0.08 -1.62 2.54 -90.62 -0.23 -1.85 16 14 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 15 C -0.13 -2.56 8.77 37.16 0.33 -2.23 16 16 C 0.01 0.38 3.76 -27.88 -0.10 0.28 16 17 C -0.59 -17.04 8.41 -34.44 -0.29 -17.33 16 18 H 0.05 1.42 7.06 -52.48 -0.37 1.05 16 19 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 20 N -0.92 -28.64 13.65 55.43 0.76 -27.89 16 21 Si 1.07 25.85 29.90 -169.99 -5.08 20.76 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 C -0.12 -1.23 5.07 -25.62 -0.13 -1.36 16 26 C -0.11 -1.00 4.75 -27.44 -0.13 -1.13 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.40 6.31 -51.93 -0.33 0.07 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.42 6.06 -51.93 -0.31 0.11 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.51 7.47 -51.93 -0.39 0.12 16 35 H 0.06 0.51 5.64 -51.93 -0.29 0.22 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.65 7.46 -51.93 -0.39 0.27 16 38 H 0.07 1.03 7.08 -51.93 -0.37 0.66 16 39 H 0.06 0.75 6.97 -51.93 -0.36 0.39 16 40 H 0.34 4.83 6.57 -39.29 -0.26 4.57 16 41 H 0.02 0.37 8.04 -51.93 -0.42 -0.05 16 42 H 0.07 1.21 7.33 -51.93 -0.38 0.83 16 43 H 0.03 0.55 6.68 -51.93 -0.35 0.20 16 44 H 0.06 1.34 6.95 -51.93 -0.36 0.98 16 45 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 46 H 0.00 0.11 8.01 -51.93 -0.42 -0.31 16 47 H 0.01 0.14 8.01 -51.93 -0.42 -0.27 16 48 H 0.27 8.35 7.22 -40.82 -0.29 8.05 16 49 H 0.07 0.74 8.12 -51.93 -0.42 0.31 16 50 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.06 0.55 6.63 -51.93 -0.34 0.20 16 52 H 0.06 0.52 5.60 -51.93 -0.29 0.23 16 LS Contribution 373.12 15.07 5.62 5.62 Total: -1.00 -29.93 373.12 -10.36 -40.28 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -10.04 Total: 0.73 kcal Atomic # 6 Polarization: -27.56 SS G_CDS: -0.95 Total: -28.50 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.09 Total: -38.90 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.08 Total: 20.76 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.93 -10.36 -40.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001621271997.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.385 kcal (2) G-P(sol) polarization free energy of solvation -29.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds