Wall clock time and date at job start Tue Mar 31 2020 06:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47072 * 2 1 4 4 C 1.52991 * 109.47184 * 119.99964 * 2 1 3 5 5 N 1.46906 * 109.47239 * 176.30368 * 4 2 1 6 6 C 1.46902 * 110.99797 * 281.96803 * 5 4 2 7 7 C 1.50695 * 109.47240 * 78.49288 * 6 5 4 8 8 H 1.08007 * 120.00163 * 5.49293 * 7 6 5 9 9 C 1.37879 * 120.00320 * 185.49225 * 7 6 5 10 10 N 1.31519 * 119.99890 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00254 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47027 * 179.97438 * 11 9 7 13 13 H 1.48507 * 109.47091 * 60.00411 * 11 9 7 14 14 H 1.48495 * 109.47535 * 300.00291 * 11 9 7 15 15 C 1.46894 * 111.00216 * 158.01519 * 5 4 2 16 16 C 1.52999 * 109.46987 * 287.90823 * 15 5 4 17 17 C 1.53005 * 109.46798 * 184.33521 * 16 15 5 18 18 H 1.08996 * 109.47638 * 304.99799 * 17 16 15 19 19 C 1.52999 * 109.47173 * 65.00407 * 17 16 15 20 20 C 1.52995 * 109.47266 * 179.97438 * 19 17 16 21 21 C 1.52995 * 109.47364 * 299.99867 * 20 19 17 22 22 C 1.53001 * 109.47326 * 59.99701 * 21 20 19 23 23 H 1.09005 * 109.46718 * 59.99994 * 22 21 20 24 24 C 1.52994 * 109.47574 * 180.02562 * 22 21 20 25 25 C 1.53004 * 109.47259 * 300.00380 * 22 21 20 26 26 H 1.08995 * 109.47155 * 300.00213 * 1 2 3 27 27 H 1.09000 * 109.47065 * 60.00450 * 1 2 3 28 28 H 1.09002 * 109.47074 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47132 * 240.00464 * 2 1 3 30 30 H 1.08990 * 109.47232 * 62.71512 * 3 2 1 31 31 H 1.08999 * 109.47383 * 182.71916 * 3 2 1 32 32 H 1.09010 * 109.46978 * 302.71194 * 3 2 1 33 33 H 1.09002 * 109.47121 * 56.30182 * 4 2 1 34 34 H 1.08997 * 109.47098 * 296.29966 * 4 2 1 35 35 H 1.09004 * 109.47413 * 318.49648 * 6 5 4 36 36 H 1.08993 * 109.47700 * 198.49695 * 6 5 4 37 37 H 0.96999 * 119.99764 * 359.97438 * 10 9 7 38 38 H 1.09004 * 109.47382 * 47.90819 * 15 5 4 39 39 H 1.09001 * 109.47099 * 167.90781 * 15 5 4 40 40 H 1.08994 * 109.47147 * 304.33383 * 16 15 5 41 41 H 1.09001 * 109.47124 * 64.33899 * 16 15 5 42 42 H 1.08997 * 109.46709 * 299.99917 * 19 17 16 43 43 H 1.09005 * 109.47439 * 59.99320 * 19 17 16 44 44 H 1.09005 * 109.46954 * 60.00041 * 20 19 17 45 45 H 1.09000 * 109.47307 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.47642 * 179.97438 * 21 20 19 47 47 H 1.09005 * 109.47227 * 300.00006 * 21 20 19 48 48 H 1.08995 * 109.47305 * 60.00233 * 24 22 21 49 49 H 1.09006 * 109.47592 * 180.02562 * 24 22 21 50 50 H 1.09001 * 109.47275 * 300.00179 * 24 22 21 51 51 H 1.08996 * 109.47265 * 299.99962 * 25 22 21 52 52 H 1.08994 * 109.47010 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5063 -0.7990 1.2054 6 6 3.9500 -1.8639 0.2959 7 6 3.8482 -1.3828 -1.1285 8 1 3.5751 -0.3583 -1.3343 9 6 4.1038 -2.2504 -2.1692 10 7 4.4359 -3.4981 -1.9187 11 14 3.9769 -1.6542 -3.9350 12 1 4.2985 -2.7714 -4.8590 13 1 4.9362 -0.5415 -4.1519 14 1 2.5961 -1.1755 -4.1979 15 6 4.0638 -0.9897 2.5510 16 6 3.9248 0.3081 3.3492 17 6 4.6014 0.1438 4.7116 18 1 4.1867 -0.7261 5.2208 19 6 6.1061 -0.0504 4.5137 20 6 6.7828 -0.2141 5.8760 21 6 6.5370 1.0373 6.7213 22 6 5.0323 1.2316 6.9193 23 1 4.6176 0.3617 7.4287 24 6 4.7864 2.4833 7.7639 25 6 4.3556 1.3953 5.5568 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.7170 1.9421 0.9132 31 1 3.1289 1.4430 -0.0488 32 1 1.6374 1.9702 -0.8648 33 1 1.6235 -1.7280 1.2829 34 1 1.7318 -0.1705 2.1379 35 1 3.3180 -2.7420 0.4288 36 1 4.9848 -2.1242 0.5185 37 1 4.5014 -3.8078 -1.0018 38 1 3.5228 -1.7883 3.0587 39 1 5.1176 -1.2573 2.4731 40 1 4.4001 1.1231 2.8034 41 1 2.8684 0.5347 3.4932 42 1 6.2812 -0.9417 3.9112 43 1 6.5209 0.8196 4.0045 44 1 6.3681 -1.0839 6.3855 45 1 7.8547 -0.3528 5.7350 46 1 7.0187 0.9205 7.6921 47 1 6.9517 1.9072 6.2118 48 1 5.2010 3.3529 7.2541 49 1 3.7144 2.6215 7.9054 50 1 5.2686 2.3671 8.7346 51 1 4.7702 2.2650 5.0473 52 1 3.2836 1.5333 5.6979 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001644669502.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:02 Heat of formation + Delta-G solvation = -53.367084 kcal Electronic energy + Delta-G solvation = -23521.776762 eV Core-core repulsion = 20518.887482 eV Total energy + Delta-G solvation = -3002.889280 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.20457 -37.54011 -34.45496 -33.39738 -32.45009 -31.65279 -28.30263 -26.59240 -26.47788 -26.22816 -24.70423 -22.58948 -22.01060 -20.87259 -19.86813 -19.76347 -19.04575 -16.75337 -15.49714 -15.15286 -14.88058 -14.68603 -14.28738 -13.87321 -13.76878 -13.68711 -13.58154 -13.11279 -12.71956 -12.61968 -12.50088 -12.25109 -12.04765 -11.87142 -11.69398 -11.52858 -11.26207 -11.20197 -10.99231 -10.95468 -10.87442 -10.73365 -10.49631 -10.47540 -10.34610 -10.19376 -10.08820 -10.00573 -9.85710 -9.76547 -9.34446 -8.61441 -8.28655 -7.22816 -6.28913 -3.96982 3.46822 3.48655 3.66814 4.49408 4.58062 4.60990 4.69766 4.90964 5.04944 5.11502 5.29883 5.37222 5.39366 5.42739 5.47797 5.54703 5.61208 5.61799 5.63175 5.71432 5.74451 5.81777 5.86500 5.92996 5.95216 5.99757 6.06248 6.10837 6.12656 6.19977 6.22181 6.24087 6.28222 6.32015 6.37187 6.42636 6.43165 6.54597 6.59914 6.68183 6.71097 6.80767 7.04784 7.12641 7.15545 7.42802 7.96546 8.11842 8.39088 8.68072 8.93888 9.71516 11.07681 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.020074 B = 0.003885 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.537918 B = 7206.015680 C = 8082.742680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 C -0.126 4.126 4 C 0.079 3.921 5 N -0.528 5.528 6 C 0.182 3.818 7 C -0.579 4.579 8 H 0.068 0.932 9 C 0.011 3.989 10 N -0.917 5.917 11 Si 1.066 2.934 12 H -0.284 1.284 13 H -0.288 1.288 14 H -0.288 1.288 15 C 0.055 3.945 16 C -0.106 4.106 17 C -0.085 4.085 18 H 0.064 0.936 19 C -0.116 4.116 20 C -0.120 4.120 21 C -0.113 4.113 22 C -0.093 4.093 23 H 0.066 0.934 24 C -0.147 4.147 25 C -0.107 4.107 26 H 0.040 0.960 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.115 0.885 30 H 0.033 0.967 31 H 0.068 0.932 32 H 0.035 0.965 33 H 0.019 0.981 34 H 0.049 0.951 35 H -0.017 1.017 36 H 0.012 0.988 37 H 0.266 0.734 38 H 0.016 0.984 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.060 0.940 48 H 0.053 0.947 49 H 0.052 0.948 50 H 0.051 0.949 51 H 0.062 0.938 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.667 9.634 16.046 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.128 4.128 3 C -0.184 4.184 4 C -0.050 4.050 5 N -0.251 5.251 6 C 0.056 3.944 7 C -0.618 4.618 8 H 0.086 0.914 9 C -0.192 4.192 10 N -0.554 5.554 11 Si 0.895 3.105 12 H -0.210 1.210 13 H -0.214 1.214 14 H -0.214 1.214 15 C -0.074 4.074 16 C -0.144 4.144 17 C -0.104 4.104 18 H 0.082 0.918 19 C -0.153 4.153 20 C -0.157 4.157 21 C -0.150 4.150 22 C -0.111 4.111 23 H 0.085 0.915 24 C -0.204 4.204 25 C -0.144 4.144 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.133 0.867 30 H 0.052 0.948 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.037 0.963 34 H 0.067 0.933 35 H 0.000 1.000 36 H 0.030 0.970 37 H 0.076 0.924 38 H 0.034 0.966 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.072 0.928 49 H 0.072 0.928 50 H 0.070 0.930 51 H 0.080 0.920 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.322 9.596 14.276 17.204 hybrid contribution -0.505 -0.387 2.016 2.114 sum -0.826 9.209 16.292 18.732 Atomic orbital electron populations 1.21827 0.97224 1.00688 1.00351 1.21487 0.92885 0.96918 1.01525 1.21608 1.02474 0.95480 0.98799 1.21955 0.88448 0.97535 0.97022 1.61994 1.07671 1.48700 1.06763 1.19911 0.94079 0.87734 0.92648 1.22098 1.49848 0.99445 0.90383 0.91390 1.25802 0.94228 0.94298 1.04862 1.70791 1.45210 1.16290 1.23126 0.83575 0.76503 0.75338 0.75105 1.20987 1.21402 1.21414 1.22129 0.99641 0.95257 0.90364 1.21613 0.99945 0.98806 0.94021 1.21135 0.95578 0.97711 0.95941 0.91782 1.21634 0.94935 1.02252 0.96485 1.21541 1.00115 0.97741 0.96327 1.21587 0.95659 0.98341 0.99443 1.21141 0.95802 0.98047 0.96119 0.91522 1.21833 1.01330 0.97838 0.99433 1.21628 0.99925 0.98143 0.94727 0.94076 0.93281 0.93481 0.86721 0.94822 0.91306 0.94576 0.96269 0.93272 0.99955 0.97007 0.92410 0.96618 0.91429 0.91293 0.92591 0.91604 0.91929 0.92303 0.92271 0.92527 0.92086 0.92765 0.92844 0.93009 0.91973 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.19 37.16 0.34 -1.98 16 2 C -0.11 -2.12 2.46 -90.62 -0.22 -2.34 16 3 C -0.13 -2.25 8.72 37.16 0.32 -1.93 16 4 C 0.08 1.54 4.24 -3.83 -0.02 1.53 16 5 N -0.53 -11.17 3.81 -236.08 -0.90 -12.07 16 6 C 0.18 4.66 4.15 -4.98 -0.02 4.64 16 7 C -0.58 -15.91 7.18 -34.44 -0.25 -16.15 16 8 H 0.07 1.85 5.58 -52.48 -0.29 1.55 16 9 C 0.01 0.32 5.46 -17.82 -0.10 0.22 16 10 N -0.92 -27.88 13.65 55.43 0.76 -27.13 16 11 Si 1.07 25.25 29.90 -169.99 -5.08 20.16 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 15 C 0.05 0.98 4.80 -3.83 -0.02 0.96 16 16 C -0.11 -1.55 4.68 -26.73 -0.13 -1.68 16 17 C -0.08 -1.03 2.19 -90.61 -0.20 -1.23 16 18 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 19 C -0.12 -1.39 4.96 -26.73 -0.13 -1.52 16 20 C -0.12 -1.22 5.92 -26.74 -0.16 -1.38 16 21 C -0.11 -1.05 5.20 -26.73 -0.14 -1.19 16 22 C -0.09 -0.87 2.72 -90.62 -0.25 -1.11 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 24 C -0.15 -1.20 9.19 37.15 0.34 -0.86 16 25 C -0.11 -1.13 4.48 -26.73 -0.12 -1.25 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.12 2.66 4.87 -51.92 -0.25 2.40 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 1.36 7.41 -51.93 -0.38 0.98 16 32 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 33 H 0.02 0.40 7.65 -51.93 -0.40 0.01 16 34 H 0.05 0.86 6.29 -51.93 -0.33 0.54 16 35 H -0.02 -0.47 7.29 -51.93 -0.38 -0.85 16 36 H 0.01 0.32 7.59 -51.93 -0.39 -0.07 16 37 H 0.27 8.09 7.18 -40.82 -0.29 7.79 16 38 H 0.02 0.28 8.05 -51.93 -0.42 -0.14 16 39 H 0.07 1.24 5.89 -51.93 -0.31 0.94 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.06 0.82 6.67 -51.93 -0.35 0.47 16 42 H 0.07 0.87 6.47 -51.93 -0.34 0.53 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 49 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 52 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 381.75 15.07 5.75 5.75 Total: -1.00 -28.62 381.75 -10.74 -39.36 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -10.53 Total: -0.80 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: -0.74 Total: -25.28 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: -0.14 Total: -39.20 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.08 Total: 20.16 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.62 -10.74 -39.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001644669502.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.008 kcal (2) G-P(sol) polarization free energy of solvation -28.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds