Wall clock time and date at job start Tue Mar 31 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47039 * 2 1 4 4 C 1.53006 * 109.47071 * 119.99683 * 2 1 3 5 5 N 1.46896 * 109.47018 * 178.44385 * 4 2 1 6 6 C 1.46906 * 110.99793 * 285.96352 * 5 4 2 7 7 C 1.50701 * 109.46904 * 75.82274 * 6 5 4 8 8 H 1.08007 * 119.99830 * 5.34474 * 7 6 5 9 9 C 1.37872 * 120.00071 * 185.34858 * 7 6 5 10 10 N 1.31513 * 120.00037 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00302 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47235 * 89.99587 * 11 9 7 13 13 H 1.48500 * 109.47371 * 209.99928 * 11 9 7 14 14 H 1.48506 * 109.46755 * 330.00089 * 11 9 7 15 15 C 1.46899 * 110.99804 * 162.01555 * 5 4 2 16 16 C 1.53001 * 109.47079 * 287.42495 * 15 5 4 17 17 C 1.52995 * 109.47324 * 177.78468 * 16 15 5 18 18 H 1.09007 * 109.46847 * 304.99771 * 17 16 15 19 19 C 1.52996 * 109.47576 * 64.99946 * 17 16 15 20 20 C 1.52995 * 109.47265 * 180.02562 * 19 17 16 21 21 C 1.52998 * 109.47346 * 300.00009 * 20 19 17 22 22 C 1.52996 * 109.46945 * 59.99795 * 21 20 19 23 23 H 1.09005 * 109.47048 * 180.02562 * 22 21 20 24 24 C 1.52992 * 109.47215 * 60.00512 * 22 21 20 25 25 C 1.52995 * 109.47265 * 300.00254 * 22 21 20 26 26 H 1.08999 * 109.47624 * 300.00003 * 1 2 3 27 27 H 1.08997 * 109.47373 * 60.00226 * 1 2 3 28 28 H 1.09009 * 109.47052 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47186 * 239.99718 * 2 1 3 30 30 H 1.08996 * 109.46785 * 184.23010 * 3 2 1 31 31 H 1.08998 * 109.46774 * 304.23106 * 3 2 1 32 32 H 1.08998 * 109.47202 * 64.22998 * 3 2 1 33 33 H 1.09001 * 109.46829 * 58.44373 * 4 2 1 34 34 H 1.09003 * 109.47087 * 298.44312 * 4 2 1 35 35 H 1.08997 * 109.46777 * 195.81484 * 6 5 4 36 36 H 1.08998 * 109.47415 * 315.82231 * 6 5 4 37 37 H 0.97002 * 120.00652 * 180.02562 * 10 9 7 38 38 H 1.09003 * 109.47237 * 167.43150 * 15 5 4 39 39 H 1.08992 * 109.47673 * 47.42686 * 15 5 4 40 40 H 1.08999 * 109.47039 * 57.78100 * 16 15 5 41 41 H 1.09008 * 109.46855 * 297.78444 * 16 15 5 42 42 H 1.09007 * 109.46787 * 300.00482 * 19 17 16 43 43 H 1.08998 * 109.46895 * 60.00002 * 19 17 16 44 44 H 1.08998 * 109.47343 * 60.00054 * 20 19 17 45 45 H 1.09004 * 109.46984 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.47301 * 180.02562 * 21 20 19 47 47 H 1.09007 * 109.46817 * 300.00025 * 21 20 19 48 48 H 1.09000 * 109.47442 * 59.99751 * 24 22 21 49 49 H 1.08999 * 109.47341 * 179.97438 * 24 22 21 50 50 H 1.09005 * 109.47076 * 299.99938 * 24 22 21 51 51 H 1.08998 * 109.47343 * 299.99945 * 25 22 21 52 52 H 1.09004 * 109.46984 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5085 -0.7539 1.2307 6 6 4.0009 -1.7275 0.2469 7 6 3.8510 -1.1591 -1.1407 8 1 3.5131 -0.1420 -1.2741 9 6 4.1450 -1.9376 -2.2400 10 7 4.5568 -3.1760 -2.0776 11 14 3.9585 -1.2334 -3.9601 12 1 5.2355 -0.6005 -4.3771 13 1 3.6143 -2.3244 -4.9070 14 1 2.8772 -0.2154 -3.9636 15 6 4.0457 -1.0390 2.5678 16 6 3.8638 0.1885 3.4629 17 6 4.3729 -0.1269 4.8708 18 1 3.8706 -1.0179 5.2476 19 6 5.8821 -0.3735 4.8241 20 6 6.3911 -0.6896 6.2318 21 6 6.0959 0.4919 7.1581 22 6 4.5867 0.7385 7.2048 23 1 4.3764 1.5806 7.8643 24 6 3.8816 -0.5122 7.7332 25 6 4.0777 1.0546 5.7970 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0278 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1273 1.4434 -0.0758 31 1 1.6160 1.9777 -0.8496 32 1 1.7399 1.9340 0.9254 33 1 1.6540 -1.7405 1.2634 34 1 1.6996 -0.1914 2.1391 35 1 5.0523 -1.9398 0.4409 36 1 3.4234 -2.6485 0.3267 37 1 4.7641 -3.7237 -2.8509 38 1 5.1064 -1.2777 2.4900 39 1 3.5134 -1.8860 3.0003 40 1 2.8069 0.4511 3.5091 41 1 4.4284 1.0252 3.0513 42 1 6.0924 -1.2155 4.1645 43 1 6.3844 0.5174 4.4472 44 1 5.8888 -1.5807 6.6083 45 1 7.4663 -0.8657 6.1984 46 1 6.4589 0.2669 8.1609 47 1 6.5982 1.3830 6.7816 48 1 4.2442 -0.7374 8.7362 49 1 2.8064 -0.3363 7.7669 50 1 4.0919 -1.3540 7.0733 51 1 4.5800 1.9457 5.4205 52 1 3.0025 1.2307 5.8304 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001644669503.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:05 Heat of formation + Delta-G solvation = -43.702406 kcal Electronic energy + Delta-G solvation = -23668.824023 eV Core-core repulsion = 20666.353835 eV Total energy + Delta-G solvation = -3002.470188 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.41523 -37.48933 -34.33464 -33.03913 -32.13694 -31.43846 -28.32742 -26.89992 -26.57261 -26.37810 -24.79345 -22.62180 -22.29601 -20.75391 -20.08125 -18.98135 -18.57689 -16.33670 -15.77869 -14.99861 -14.88280 -14.52232 -14.33996 -14.18111 -13.92096 -13.65906 -13.36437 -13.01626 -12.66442 -12.40711 -12.27118 -12.16810 -12.01140 -11.69640 -11.64915 -11.52206 -11.30454 -11.15856 -11.05113 -11.00650 -10.86217 -10.65894 -10.46117 -10.43694 -10.15344 -10.12752 -10.05899 -9.92763 -9.78579 -9.67914 -9.17721 -8.97907 -8.33240 -7.12585 -5.97689 -3.95669 3.33981 3.40484 3.43662 4.44687 4.62098 4.67563 4.72166 4.99481 5.11985 5.22790 5.32923 5.33867 5.35988 5.47457 5.54241 5.64474 5.67140 5.70890 5.71301 5.78531 5.80299 5.88283 5.94281 5.99033 6.01775 6.08858 6.14559 6.17531 6.19250 6.20919 6.30233 6.32197 6.35726 6.42364 6.44989 6.49310 6.50085 6.62038 6.68815 6.75125 6.81392 6.90195 7.23316 7.32922 7.42529 7.53649 7.92539 8.20908 8.31164 8.64651 9.11204 9.65426 11.12724 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.021030 B = 0.003941 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.087000 B = 7102.289670 C = 7889.850944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 C -0.126 4.126 4 C 0.079 3.921 5 N -0.535 5.535 6 C 0.192 3.808 7 C -0.502 4.502 8 H 0.078 0.922 9 C 0.053 3.947 10 N -0.900 5.900 11 Si 0.890 3.110 12 H -0.281 1.281 13 H -0.289 1.289 14 H -0.272 1.272 15 C 0.057 3.943 16 C -0.107 4.107 17 C -0.086 4.086 18 H 0.068 0.932 19 C -0.115 4.115 20 C -0.121 4.121 21 C -0.113 4.113 22 C -0.091 4.091 23 H 0.063 0.937 24 C -0.151 4.151 25 C -0.108 4.108 26 H 0.040 0.960 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.119 0.881 30 H 0.071 0.929 31 H 0.033 0.967 32 H 0.032 0.968 33 H 0.018 0.982 34 H 0.048 0.952 35 H 0.021 0.979 36 H -0.006 1.006 37 H 0.259 0.741 38 H 0.067 0.933 39 H 0.016 0.984 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.059 0.941 48 H 0.048 0.952 49 H 0.051 0.949 50 H 0.063 0.937 51 H 0.060 0.940 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.446 6.771 16.530 17.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.131 4.131 3 C -0.183 4.183 4 C -0.049 4.049 5 N -0.259 5.259 6 C 0.066 3.934 7 C -0.540 4.540 8 H 0.096 0.904 9 C -0.148 4.148 10 N -0.540 5.540 11 Si 0.718 3.282 12 H -0.207 1.207 13 H -0.215 1.215 14 H -0.197 1.197 15 C -0.072 4.072 16 C -0.145 4.145 17 C -0.105 4.105 18 H 0.086 0.914 19 C -0.153 4.153 20 C -0.159 4.159 21 C -0.151 4.151 22 C -0.110 4.110 23 H 0.082 0.918 24 C -0.208 4.208 25 C -0.145 4.145 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.136 0.864 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.037 0.963 34 H 0.066 0.934 35 H 0.039 0.961 36 H 0.012 0.988 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.034 0.966 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.068 0.932 49 H 0.070 0.930 50 H 0.082 0.918 51 H 0.079 0.921 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.220 7.068 16.280 17.790 hybrid contribution -0.361 -0.616 -0.711 1.007 sum -1.580 6.452 15.569 16.927 Atomic orbital electron populations 1.21837 0.97431 1.00591 1.00248 1.21588 0.92724 0.97055 1.01768 1.21615 1.02635 0.95456 0.98634 1.21929 0.88718 0.97397 0.96884 1.62062 1.06843 1.52407 1.04582 1.19785 0.94793 0.88732 0.90057 1.21424 1.43200 0.99514 0.89883 0.90395 1.25008 0.95740 0.94876 0.99164 1.69964 1.46148 1.07643 1.30212 0.86618 0.78527 0.78635 0.84422 1.20734 1.21462 1.19672 1.22071 0.99719 0.95022 0.90354 1.21624 1.00758 0.99008 0.93091 1.21179 0.95871 0.98121 0.95319 0.91406 1.21623 0.95518 1.01942 0.96175 1.21580 1.00354 0.98195 0.95759 1.21552 0.95648 0.98717 0.99150 1.21087 0.95206 0.97860 0.96832 0.91815 1.21941 0.99964 0.98386 1.00502 1.21596 1.00471 0.98316 0.94132 0.94137 0.93436 0.93522 0.86382 0.91037 0.94835 0.94846 0.96346 0.93374 0.96065 0.98777 0.93096 0.91497 0.96559 0.92469 0.91561 0.91583 0.92030 0.91941 0.92438 0.92578 0.92178 0.93250 0.93005 0.91817 0.92075 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.19 37.16 0.34 -1.99 16 2 C -0.11 -2.19 2.40 -90.62 -0.22 -2.40 16 3 C -0.13 -2.28 8.46 37.16 0.31 -1.97 16 4 C 0.08 1.54 4.24 -3.82 -0.02 1.53 16 5 N -0.53 -11.24 3.80 -236.07 -0.90 -12.13 16 6 C 0.19 4.91 4.76 -4.97 -0.02 4.88 16 7 C -0.50 -13.56 6.94 -34.44 -0.24 -13.80 16 8 H 0.08 2.05 4.69 -52.48 -0.25 1.80 16 9 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 10 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 11 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 15 C 0.06 1.01 4.67 -3.82 -0.02 1.00 16 16 C -0.11 -1.56 4.79 -26.73 -0.13 -1.69 16 17 C -0.09 -1.03 1.91 -90.63 -0.17 -1.21 16 18 H 0.07 0.84 6.43 -51.93 -0.33 0.50 16 19 C -0.12 -1.36 4.96 -26.74 -0.13 -1.50 16 20 C -0.12 -1.23 5.65 -26.73 -0.15 -1.38 16 21 C -0.11 -1.05 5.45 -26.73 -0.15 -1.19 16 22 C -0.09 -0.86 3.19 -90.63 -0.29 -1.15 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 C -0.15 -1.37 8.50 37.15 0.32 -1.05 16 25 C -0.11 -1.14 4.73 -26.73 -0.13 -1.27 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 29 H 0.12 2.73 4.80 -51.93 -0.25 2.48 16 30 H 0.07 1.44 6.87 -51.93 -0.36 1.08 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.02 0.38 7.77 -51.93 -0.40 -0.02 16 34 H 0.05 0.84 6.28 -51.93 -0.33 0.52 16 35 H 0.02 0.58 7.64 -51.93 -0.40 0.19 16 36 H -0.01 -0.16 7.75 -51.93 -0.40 -0.56 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.07 1.23 6.20 -51.93 -0.32 0.90 16 39 H 0.02 0.29 8.04 -51.93 -0.42 -0.13 16 40 H 0.06 0.84 6.51 -51.93 -0.34 0.50 16 41 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 42 H 0.07 0.86 6.61 -51.93 -0.34 0.51 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.63 6.43 -51.93 -0.33 0.30 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.06 0.62 4.81 -51.93 -0.25 0.37 16 51 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 52 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 374.53 15.07 5.64 5.64 Total: -1.00 -27.77 374.53 -10.52 -38.29 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -10.20 Total: -0.59 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: -0.79 Total: -21.81 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: -0.16 Total: -37.95 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -27.77 -10.52 -38.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001644669503.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.413 kcal (2) G-P(sol) polarization free energy of solvation -27.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds