Wall clock time and date at job start Tue Mar 31 2020 05:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47236 * 2 1 4 4 C 1.53006 * 109.47234 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47127 * 295.00428 * 4 3 2 6 6 C 1.53002 * 109.47143 * 299.99835 * 5 4 3 7 7 C 1.52997 * 109.47092 * 300.00129 * 6 5 4 8 8 C 1.52999 * 109.47592 * 180.02562 * 7 6 5 9 9 N 1.46900 * 109.46819 * 64.99565 * 8 7 6 10 10 C 1.46907 * 110.99641 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.46977 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47426 * 300.00048 * 11 10 9 13 13 C 1.53004 * 109.47022 * 60.00008 * 11 10 9 14 14 C 1.50704 * 109.46959 * 180.02562 * 11 10 9 15 15 H 1.07997 * 120.00154 * 0.02562 * 14 11 10 16 16 C 1.37873 * 119.99752 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00344 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 119.99896 * 179.97438 * 16 14 11 19 19 H 1.48509 * 109.47091 * 60.00277 * 18 16 14 20 20 H 1.48505 * 109.47349 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47440 * 300.00121 * 18 16 14 22 22 C 1.53002 * 109.46978 * 59.99700 * 7 6 5 23 23 C 1.52993 * 109.47392 * 299.99957 * 22 7 6 24 24 H 1.08998 * 109.47295 * 59.99857 * 1 2 3 25 25 H 1.09000 * 109.47315 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46920 * 299.99564 * 1 2 3 27 27 H 1.09006 * 109.46758 * 239.99827 * 2 1 3 28 28 H 1.09003 * 109.47204 * 120.00881 * 2 1 3 29 29 H 1.09007 * 109.46945 * 60.00508 * 3 2 1 30 30 H 1.08995 * 109.47339 * 299.99806 * 3 2 1 31 31 H 1.09001 * 109.47002 * 55.00002 * 4 3 2 32 32 H 1.09004 * 109.47261 * 59.99697 * 5 4 3 33 33 H 1.09002 * 109.47153 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.47312 * 180.02562 * 6 5 4 35 35 H 1.09002 * 109.47067 * 59.99982 * 6 5 4 36 36 H 1.09002 * 109.47045 * 299.99867 * 7 6 5 37 37 H 1.08996 * 109.47223 * 184.99995 * 8 7 6 38 38 H 1.09000 * 109.46709 * 304.99965 * 8 7 6 39 39 H 1.00900 * 111.00289 * 303.95567 * 9 8 7 40 40 H 1.09003 * 109.47142 * 300.00026 * 10 9 8 41 41 H 1.08997 * 109.46942 * 60.00050 * 10 9 8 42 42 H 1.09001 * 109.47093 * 59.99763 * 12 11 10 43 43 H 1.08993 * 109.47372 * 179.97438 * 12 11 10 44 44 H 1.08997 * 109.47017 * 300.00326 * 12 11 10 45 45 H 1.09000 * 109.46687 * 59.99947 * 13 11 10 46 46 H 1.08997 * 109.47010 * 179.97438 * 13 11 10 47 47 H 1.08992 * 109.47201 * 299.99949 * 13 11 10 48 48 H 0.97002 * 120.00441 * 179.97438 * 17 16 14 49 49 H 1.09004 * 109.47006 * 180.02562 * 22 7 6 50 50 H 1.09002 * 109.46838 * 60.00684 * 22 7 6 51 51 H 1.09002 * 109.47722 * 300.00185 * 23 22 7 52 52 H 1.09000 * 109.47250 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0806 0.8325 1.3063 6 6 3.5711 1.6597 2.4884 7 6 4.0811 3.0967 2.3627 8 6 3.5722 3.9238 3.5450 9 7 4.1590 3.4106 4.7901 10 6 3.6912 4.1820 5.9496 11 6 4.3228 3.6198 7.2246 12 6 3.9180 2.1537 7.3907 13 6 5.8464 3.7201 7.1262 14 6 3.8425 4.4108 8.4141 15 1 3.1552 5.2321 8.2746 16 6 4.2805 4.0859 9.6804 17 7 5.1171 3.0855 9.8504 18 14 3.6858 5.0668 11.1547 19 1 2.2070 4.9689 11.2505 20 1 4.2987 4.5210 12.3923 21 1 4.0782 6.4899 10.9934 22 6 3.5705 3.7065 1.0557 23 6 4.0800 2.8794 -0.1263 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5140 0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6767 1.9563 -0.8899 31 1 3.9330 0.8531 -0.8427 32 1 3.7172 -0.1913 1.3959 33 1 5.1706 0.8321 1.3057 34 1 3.9352 1.2254 3.4195 35 1 2.4811 1.6597 2.4888 36 1 5.1711 3.0967 2.3623 37 1 3.8605 4.9662 3.4101 38 1 2.4859 3.8512 3.5983 39 1 3.9599 2.4282 4.9057 40 1 3.9801 5.2265 5.8315 41 1 2.6058 4.1109 6.0194 42 1 4.2649 1.5813 6.5304 43 1 4.3682 1.7530 8.2988 44 1 2.8326 2.0822 7.4607 45 1 6.1347 4.7646 7.0079 46 1 6.2963 3.3199 8.0348 47 1 6.1933 3.1477 6.2660 48 1 5.4255 2.8571 10.7412 49 1 3.9342 4.7302 0.9659 50 1 2.4805 3.7066 1.0562 51 1 5.1700 2.8794 -0.1268 52 1 3.7166 3.3142 -1.0575 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658102445.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:27 Heat of formation + Delta-G solvation = -51.598742 kcal Electronic energy + Delta-G solvation = -23359.561136 eV Core-core repulsion = 20356.748537 eV Total energy + Delta-G solvation = -3002.812599 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.64177 -36.92872 -35.10255 -33.50239 -31.54115 -30.77775 -29.97274 -26.83717 -25.52781 -25.19754 -24.79163 -23.20426 -22.56038 -21.56646 -20.54973 -18.53122 -18.33689 -16.11223 -15.89422 -15.33598 -15.17525 -14.59248 -14.46803 -14.06317 -13.92428 -13.55953 -13.35041 -13.10356 -12.79268 -12.50198 -12.28242 -12.19272 -12.03486 -11.83955 -11.63299 -11.37699 -11.25224 -11.08044 -11.03244 -10.94041 -10.79628 -10.64438 -10.56784 -10.51812 -10.14025 -10.08030 -10.00290 -9.97672 -9.82310 -9.33943 -8.98393 -8.59126 -8.25793 -7.61066 -5.88105 -3.98511 3.34485 3.39112 3.41852 4.45077 4.50756 4.59889 4.72089 4.82089 4.91500 5.01153 5.10931 5.23187 5.31563 5.37087 5.37368 5.46978 5.49728 5.54539 5.60435 5.65601 5.70183 5.73764 5.85905 5.88757 5.90343 5.96855 6.05931 6.10570 6.11731 6.17987 6.24397 6.32310 6.36684 6.41166 6.45140 6.51957 6.64161 6.76441 6.93714 7.12314 7.21062 7.43015 7.52209 7.79134 7.80437 7.88748 8.06746 8.25625 8.38857 8.59838 9.02966 9.66277 11.12371 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.027280 B = 0.003164 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.141294 B = 8847.540118 C = 9152.749617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.118 4.118 4 C -0.086 4.086 5 C -0.113 4.113 6 C -0.117 4.117 7 C -0.083 4.083 8 C 0.063 3.937 9 N -0.687 5.687 10 C 0.075 3.925 11 C 0.069 3.931 12 C -0.131 4.131 13 C -0.119 4.119 14 C -0.507 4.507 15 H 0.051 0.949 16 C 0.065 3.935 17 N -0.885 5.885 18 Si 0.888 3.112 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.114 4.114 23 C -0.112 4.112 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.018 0.982 39 H 0.336 0.664 40 H 0.054 0.946 41 H 0.011 0.989 42 H 0.010 0.990 43 H 0.083 0.917 44 H 0.018 0.982 45 H 0.017 0.983 46 H 0.073 0.927 47 H 0.020 0.980 48 H 0.258 0.742 49 H 0.059 0.941 50 H 0.061 0.939 51 H 0.061 0.939 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.508 -4.653 -20.269 21.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.105 4.105 5 C -0.151 4.151 6 C -0.155 4.155 7 C -0.102 4.102 8 C -0.067 4.067 9 N -0.319 5.319 10 C -0.053 4.053 11 C 0.069 3.931 12 C -0.189 4.189 13 C -0.176 4.176 14 C -0.546 4.546 15 H 0.069 0.931 16 C -0.136 4.136 17 N -0.524 5.524 18 Si 0.717 3.283 19 H -0.205 1.205 20 H -0.214 1.214 21 H -0.204 1.204 22 C -0.152 4.152 23 C -0.150 4.150 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.036 0.964 39 H 0.156 0.844 40 H 0.073 0.927 41 H 0.029 0.971 42 H 0.029 0.971 43 H 0.101 0.899 44 H 0.037 0.963 45 H 0.036 0.964 46 H 0.092 0.908 47 H 0.039 0.961 48 H 0.068 0.932 49 H 0.078 0.922 50 H 0.080 0.920 51 H 0.079 0.921 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.832 -4.384 -20.172 20.996 hybrid contribution -1.319 0.303 0.944 1.650 sum -5.151 -4.081 -19.228 20.320 Atomic orbital electron populations 1.21779 0.96195 1.01377 1.01693 1.21583 0.95549 0.97310 1.01926 1.21759 0.95118 0.96555 1.02119 1.21132 0.95307 0.96276 0.97779 1.21567 1.00488 0.98749 0.94277 1.21628 1.00475 0.95250 0.98115 1.21151 1.01107 0.94414 0.93483 1.21956 0.95647 0.98738 0.90384 1.60640 1.62126 1.07540 1.01619 1.22136 0.95622 0.96926 0.90662 1.18078 0.92919 0.92435 0.89708 1.21824 0.98047 0.98354 1.00677 1.21634 0.97914 0.97983 1.00117 1.21097 1.26971 1.15290 0.91263 0.93098 1.24881 0.94998 0.95101 0.98572 1.69824 1.32567 1.28078 1.21945 0.86728 0.78901 0.80451 0.82265 1.20488 1.21365 1.20408 1.21572 1.00709 0.98690 0.94245 1.21537 1.00539 0.94988 0.97900 0.93028 0.93002 0.92720 0.92460 0.91682 0.91112 0.92514 0.91783 0.92104 0.92080 0.91642 0.92127 0.90496 0.91803 0.96405 0.84408 0.92735 0.97116 0.97121 0.89862 0.96305 0.96367 0.90787 0.96101 0.93159 0.92236 0.92024 0.92050 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.84 16 2 C -0.13 -1.04 5.69 -26.74 -0.15 -1.19 16 3 C -0.12 -1.03 3.97 -26.73 -0.11 -1.13 16 4 C -0.09 -0.77 2.66 -90.62 -0.24 -1.01 16 5 C -0.11 -1.13 5.21 -26.73 -0.14 -1.27 16 6 C -0.12 -1.37 4.70 -26.73 -0.13 -1.49 16 7 C -0.08 -1.02 2.40 -90.62 -0.22 -1.24 16 8 C 0.06 0.94 5.15 -3.82 -0.02 0.92 16 9 N -0.69 -12.51 5.71 -113.78 -0.65 -13.16 16 10 C 0.07 1.61 4.59 -3.82 -0.02 1.60 16 11 C 0.07 1.70 0.57 -155.66 -0.09 1.62 16 12 C -0.13 -3.15 7.92 37.16 0.29 -2.86 16 13 C -0.12 -2.95 8.09 37.16 0.30 -2.65 16 14 C -0.51 -13.91 8.01 -34.44 -0.28 -14.18 16 15 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 16 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 17 N -0.89 -24.81 9.35 55.43 0.52 -24.29 16 18 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C -0.11 -1.19 4.93 -26.73 -0.13 -1.32 16 23 C -0.11 -1.03 5.45 -26.74 -0.15 -1.17 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.57 6.57 -51.93 -0.34 0.23 16 29 H 0.07 0.69 4.83 -51.93 -0.25 0.44 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.58 6.57 -51.93 -0.34 0.24 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.85 6.68 -51.93 -0.35 0.51 16 35 H 0.06 0.71 6.32 -51.93 -0.33 0.38 16 36 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.34 6.05 5.02 -39.29 -0.20 5.85 16 40 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 43 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.07 2.01 6.07 -51.93 -0.32 1.69 16 47 H 0.02 0.47 7.60 -51.93 -0.39 0.08 16 48 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 49 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.06 0.64 6.54 -51.93 -0.34 0.30 16 51 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 52 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 373.62 15.07 5.63 5.63 Total: -1.00 -27.01 373.62 -10.55 -37.56 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -10.24 Total: 2.47 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: -0.79 Total: -24.53 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: -0.13 Total: -37.45 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -27.01 -10.55 -37.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658102445.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.037 kcal (2) G-P(sol) polarization free energy of solvation -27.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds