Wall clock time and date at job start Tue Mar 31 2020 06:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47891 * 2 1 4 4 C 1.53002 * 109.47256 * 120.00091 * 2 1 3 5 5 N 1.46900 * 109.46842 * 294.99994 * 4 2 1 6 6 C 1.46907 * 110.99928 * 179.97438 * 5 4 2 7 7 C 1.52998 * 109.47046 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.46945 * 299.99755 * 7 6 5 9 9 C 1.53003 * 109.47445 * 59.99492 * 7 6 5 10 10 C 1.50696 * 109.47097 * 179.97438 * 7 6 5 11 11 H 1.08001 * 119.99936 * 359.97438 * 10 7 6 12 12 C 1.37880 * 120.00232 * 179.97438 * 10 7 6 13 13 N 1.31515 * 119.99413 * 359.97438 * 12 10 7 14 14 Si 1.86794 * 120.00234 * 180.02562 * 12 10 7 15 15 H 1.48505 * 109.47340 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47464 * 119.99721 * 14 12 10 17 17 H 1.48507 * 109.47066 * 239.99848 * 14 12 10 18 18 C 1.53008 * 109.47102 * 239.99722 * 2 1 3 19 19 C 1.52997 * 109.46963 * 65.32522 * 18 2 1 20 20 C 1.52999 * 109.47079 * 65.81124 * 19 18 2 21 21 C 1.53007 * 109.47154 * 180.02562 * 20 19 18 22 22 C 1.52999 * 109.46668 * 299.99946 * 21 20 19 23 23 C 1.52999 * 109.47289 * 60.00137 * 22 21 20 24 24 C 1.52994 * 109.47176 * 185.81293 * 19 18 2 25 25 H 1.09001 * 109.46579 * 55.87091 * 1 2 3 26 26 H 1.08996 * 109.47155 * 175.87719 * 1 2 3 27 27 H 1.09004 * 109.46788 * 295.88204 * 1 2 3 28 28 H 1.09011 * 109.47052 * 54.99312 * 4 2 1 29 29 H 1.08997 * 109.47492 * 174.99628 * 4 2 1 30 30 H 1.00899 * 111.00339 * 56.04290 * 5 4 2 31 31 H 1.09000 * 109.46790 * 299.99832 * 6 5 4 32 32 H 1.08994 * 109.47285 * 59.99316 * 6 5 4 33 33 H 1.08999 * 109.46998 * 60.00525 * 8 7 6 34 34 H 1.08996 * 109.46855 * 180.02562 * 8 7 6 35 35 H 1.08997 * 109.47129 * 299.99965 * 8 7 6 36 36 H 1.09006 * 109.46623 * 60.00266 * 9 7 6 37 37 H 1.08996 * 109.47485 * 179.97438 * 9 7 6 38 38 H 1.08999 * 109.47162 * 300.00350 * 9 7 6 39 39 H 0.97006 * 119.99572 * 180.02562 * 13 12 10 40 40 H 1.09000 * 109.46728 * 305.32559 * 18 2 1 41 41 H 1.08998 * 109.47127 * 185.32592 * 18 2 1 42 42 H 1.09004 * 109.47142 * 305.81595 * 19 18 2 43 43 H 1.08998 * 109.47169 * 59.99676 * 20 19 18 44 44 H 1.09003 * 109.47412 * 299.99836 * 20 19 18 45 45 H 1.08994 * 109.46857 * 179.97438 * 21 20 19 46 46 H 1.08992 * 109.46818 * 60.00180 * 21 20 19 47 47 H 1.09000 * 109.46472 * 179.97438 * 22 21 20 48 48 H 1.08992 * 109.47692 * 299.99699 * 22 21 20 49 49 H 1.09007 * 109.47148 * 59.99687 * 23 22 21 50 50 H 1.08998 * 109.47365 * 179.97438 * 23 22 21 51 51 H 1.09007 * 109.46869 * 299.99979 * 24 19 18 52 52 H 1.08999 * 109.47237 * 59.99763 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6514 0.0374 2.4456 6 6 2.1248 -0.6271 3.6672 7 6 1.7014 0.1903 4.8893 8 6 2.3107 1.5911 4.8019 9 6 0.1757 0.2993 4.9264 10 6 2.1864 -0.4917 6.1425 11 1 2.7409 -1.4160 6.0742 12 6 1.9224 0.0642 7.3763 13 7 1.2477 1.1901 7.4593 14 14 2.5243 -0.7808 8.9296 15 1 3.2533 -2.0227 8.5669 16 1 3.4350 0.1306 9.6678 17 1 1.3624 -1.1225 9.7892 18 6 2.0400 -0.7213 -1.2493 19 6 1.6423 0.0730 -2.4949 20 6 2.3737 1.4168 -2.4979 21 6 1.9754 2.2115 -3.7433 22 6 2.3565 1.4206 -4.9963 23 6 1.6251 0.0767 -4.9933 24 6 2.0237 -0.7181 -3.7476 25 1 -0.3632 0.5766 -0.8507 26 1 -0.3633 -1.0250 -0.0739 27 1 -0.3633 0.4486 0.9246 28 1 1.6053 -1.7199 1.2952 29 1 3.1263 -0.7996 1.2056 30 1 0.6529 0.1794 2.4753 31 1 1.6903 -1.6249 3.7297 32 1 3.2116 -0.7052 3.6406 33 1 1.9594 2.0842 3.8955 34 1 2.0094 2.1733 5.6727 35 1 3.3976 1.5135 4.7755 36 1 -0.2584 -0.6987 4.9886 37 1 -0.1260 0.8813 5.7972 38 1 -0.1755 0.7924 4.0199 39 1 1.0623 1.5814 8.3273 40 1 1.6009 -1.7178 -1.2981 41 1 3.1258 -0.8047 -1.2029 42 1 0.5659 0.2452 -2.4877 43 1 3.4500 1.2447 -2.5051 44 1 2.1019 1.9805 -1.6054 45 1 2.4962 3.1690 -3.7452 46 1 0.8992 2.3837 -3.7356 47 1 2.0724 1.9865 -5.8835 48 1 3.4327 1.2484 -5.0040 49 1 0.5487 0.2489 -4.9856 50 1 1.8962 -0.4865 -5.8862 51 1 3.1001 -0.8903 -3.7548 52 1 1.5027 -1.6755 -3.7455 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658102913.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:13 Heat of formation + Delta-G solvation = -65.612453 kcal Electronic energy + Delta-G solvation = -23004.107258 eV Core-core repulsion = 20000.686979 eV Total energy + Delta-G solvation = -3003.420279 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.04573 -38.77889 -37.01479 -34.66483 -32.80528 -31.60743 -31.05189 -27.61471 -27.45666 -27.26600 -26.65628 -24.54378 -23.49277 -22.14500 -20.76203 -20.41330 -20.14077 -17.92054 -17.16397 -16.52696 -16.25610 -15.99365 -15.48287 -15.18848 -14.94776 -14.79640 -14.67448 -14.29824 -14.14654 -13.82900 -13.65205 -13.35113 -13.09851 -12.99995 -12.94432 -12.76719 -12.58262 -12.52961 -12.43514 -12.13098 -12.08468 -11.95655 -11.94316 -11.85261 -11.56072 -11.44757 -11.29400 -11.13780 -10.96593 -10.73868 -10.63007 -10.57744 -10.35094 -9.13253 -7.97154 -6.14052 1.40585 1.43681 1.53306 2.46100 3.24726 3.41533 3.80862 3.87616 3.92909 4.07792 4.18751 4.24057 4.37260 4.46504 4.57093 4.59460 4.62271 4.68150 4.70268 4.71823 4.76569 4.81128 4.85179 4.88441 4.92903 5.01996 5.06475 5.08850 5.13134 5.17807 5.21582 5.22403 5.27739 5.32156 5.33183 5.40855 5.42926 5.46975 5.48276 5.51044 5.54325 5.65760 5.69787 5.71986 5.76746 6.18665 6.27830 6.34995 6.50523 6.68264 6.95614 7.53469 9.01297 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.041956 B = 0.002703 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.209422 B =10357.698217 C =10490.942068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 H 0.072 0.928 4 C 0.063 3.937 5 N -0.689 5.689 6 C 0.089 3.911 7 C 0.059 3.941 8 C -0.105 4.105 9 C -0.121 4.121 10 C -0.526 4.526 11 H 0.043 0.957 12 C 0.021 3.979 13 N -0.904 5.904 14 Si 0.946 3.054 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.102 4.102 19 C -0.081 4.081 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.113 4.113 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.044 0.956 28 H 0.020 0.980 29 H 0.060 0.940 30 H 0.338 0.662 31 H 0.005 0.995 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.049 0.951 35 H 0.009 0.991 36 H 0.016 0.984 37 H 0.057 0.943 38 H 0.033 0.967 39 H 0.257 0.743 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.065 0.935 48 H 0.058 0.942 49 H 0.060 0.940 50 H 0.066 0.934 51 H 0.058 0.942 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.518 -1.407 -24.138 24.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.101 4.101 3 H 0.091 0.909 4 C -0.066 4.066 5 N -0.322 5.322 6 C -0.040 4.040 7 C 0.059 3.941 8 C -0.163 4.163 9 C -0.179 4.179 10 C -0.565 4.565 11 H 0.062 0.938 12 C -0.178 4.178 13 N -0.543 5.543 14 Si 0.772 3.228 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.208 1.208 18 C -0.140 4.140 19 C -0.099 4.099 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.151 4.151 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.079 0.921 30 H 0.159 0.841 31 H 0.023 0.977 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.028 0.972 36 H 0.035 0.965 37 H 0.076 0.924 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.077 0.923 49 H 0.079 0.921 50 H 0.085 0.915 51 H 0.077 0.923 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.044 -0.867 -24.036 24.052 hybrid contribution -0.201 -1.145 1.419 1.835 sum -0.246 -2.012 -22.617 22.708 Atomic orbital electron populations 1.21863 0.95158 1.01677 1.01649 1.21108 0.95942 1.00039 0.92969 0.90919 1.22041 0.99921 0.94460 0.90217 1.60584 1.19769 1.50289 1.01531 1.21809 0.98097 0.94171 0.89921 1.18146 0.92488 0.92710 0.90789 1.21470 0.96898 0.98765 0.99200 1.21669 0.97919 0.98423 0.99886 1.21464 1.34883 1.07954 0.92167 0.93843 1.25551 0.95363 0.95540 1.01322 1.69976 1.40674 1.19317 1.24319 0.85703 0.78028 0.78689 0.80344 1.19722 1.20851 1.20788 1.21593 1.00618 0.98714 0.93109 1.21132 1.00254 0.94742 0.93813 1.21626 0.99932 0.95954 0.97861 1.21533 1.01185 0.98356 0.94624 1.21533 1.00243 0.96186 0.97652 1.21535 1.00281 0.96032 0.97709 1.21584 1.01135 0.98330 0.94025 0.91346 0.92808 0.93654 0.96147 0.92125 0.84136 0.97659 0.93588 0.94731 0.93213 0.97152 0.96482 0.92449 0.94844 0.93296 0.91861 0.92263 0.91037 0.92550 0.92469 0.92099 0.92132 0.91606 0.92283 0.92074 0.91534 0.92305 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 8.72 71.98 0.63 -2.54 16 2 C -0.08 -1.89 2.47 -10.79 -0.03 -1.91 16 3 H 0.07 1.83 6.36 -2.39 -0.02 1.81 16 4 C 0.06 1.82 5.14 86.30 0.44 2.26 16 5 N -0.69 -24.56 5.71 -513.87 -2.94 -27.49 16 6 C 0.09 3.81 4.59 86.30 0.40 4.21 16 7 C 0.06 2.92 0.57 -52.93 -0.03 2.89 16 8 C -0.11 -5.26 8.09 71.98 0.58 -4.68 16 9 C -0.12 -5.80 7.92 71.98 0.57 -5.23 16 10 C -0.53 -28.94 8.01 25.60 0.21 -28.74 16 11 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 12 C 0.02 1.16 5.15 84.66 0.44 1.60 16 13 N -0.90 -51.00 9.35 21.45 0.20 -50.80 16 14 Si 0.95 43.86 29.54 68.60 2.03 45.89 16 15 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 16 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 17 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 18 C -0.10 -1.93 4.14 30.60 0.13 -1.80 16 19 C -0.08 -1.33 2.06 -10.80 -0.02 -1.35 16 20 C -0.12 -2.00 4.98 30.60 0.15 -1.85 16 21 C -0.12 -1.78 5.92 30.60 0.18 -1.60 16 22 C -0.12 -1.56 5.92 30.59 0.18 -1.38 16 23 C -0.12 -1.51 5.92 30.61 0.18 -1.33 16 24 C -0.11 -1.63 5.21 30.61 0.16 -1.47 16 25 H 0.07 1.28 6.65 -2.39 -0.02 1.27 16 26 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.04 1.10 6.50 -2.38 -0.02 1.09 16 28 H 0.02 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 30 H 0.34 11.83 4.94 -89.70 -0.44 11.38 16 31 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.03 1.57 7.60 -2.39 -0.02 1.55 16 34 H 0.05 2.72 6.07 -2.39 -0.01 2.70 16 35 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.06 3.06 6.07 -2.39 -0.01 3.04 16 38 H 0.03 1.40 6.57 -2.39 -0.02 1.38 16 39 H 0.26 13.92 8.31 -92.70 -0.77 13.15 16 40 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 41 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.07 1.20 6.41 -2.39 -0.02 1.18 16 43 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.06 1.11 6.48 -2.39 -0.02 1.09 16 45 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 50 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 52 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -56.66 377.03 3.85 -52.81 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.39 Total: 22.52 kcal Atomic # 6 Polarization: -47.08 SS G_CDS: 4.16 Total: -42.91 kcal Atomic # 7 Polarization: -75.56 SS G_CDS: -2.73 Total: -78.30 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -56.66 3.85 -52.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658102913.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.804 kcal (2) G-P(sol) polarization free energy of solvation -56.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds