Wall clock time and date at job start Tue Mar 31 2020 06:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46937 * 2 1 4 4 C 1.53000 * 109.47018 * 119.99321 * 2 1 3 5 5 C 1.53007 * 109.46943 * 65.00232 * 4 2 1 6 6 C 1.52998 * 109.46948 * 174.73356 * 5 4 2 7 7 H 1.08996 * 109.46229 * 304.41858 * 6 5 4 8 8 C 1.53037 * 109.46198 * 64.40338 * 6 5 4 9 9 C 1.53116 * 109.27754 * 179.19552 * 8 6 5 10 10 C 1.53116 * 109.15932 * 302.33955 * 9 8 6 11 11 C 1.53045 * 109.27777 * 57.65704 * 10 9 8 12 12 N 1.46847 * 109.52226 * 300.81985 * 11 10 9 13 13 C 1.46897 * 110.99913 * 185.83691 * 12 11 10 14 14 C 1.52998 * 109.47111 * 298.63553 * 13 12 11 15 15 H 1.08996 * 109.47552 * 30.54892 * 14 13 12 16 16 C 1.53005 * 109.46665 * 270.54767 * 14 13 12 17 17 C 1.53004 * 109.46997 * 150.55491 * 14 13 12 18 18 C 1.50700 * 109.46930 * 184.99942 * 17 14 13 19 19 H 1.08001 * 120.00249 * 359.97438 * 18 17 14 20 20 C 1.37880 * 119.99699 * 179.97438 * 18 17 14 21 21 N 1.31520 * 119.99600 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 120.00175 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47119 * 90.00322 * 22 20 18 24 24 H 1.48503 * 109.47083 * 210.00399 * 22 20 18 25 25 H 1.48503 * 109.47319 * 330.00207 * 22 20 18 26 26 H 1.09003 * 109.46815 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47444 * 300.00223 * 1 2 3 28 28 H 1.09000 * 109.46959 * 60.00243 * 1 2 3 29 29 H 1.08993 * 109.47273 * 239.99718 * 2 1 3 30 30 H 1.08999 * 109.47170 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.46867 * 299.99836 * 3 2 1 32 32 H 1.08993 * 109.47369 * 59.99777 * 3 2 1 33 33 H 1.08994 * 109.47654 * 305.00348 * 4 2 1 34 34 H 1.08999 * 109.46916 * 184.99951 * 4 2 1 35 35 H 1.08998 * 109.46690 * 54.73263 * 5 4 2 36 36 H 1.08998 * 109.47152 * 294.73751 * 5 4 2 37 37 H 1.08996 * 109.50881 * 59.24932 * 8 6 5 38 38 H 1.09003 * 109.53288 * 299.15113 * 8 6 5 39 39 H 1.08996 * 109.52322 * 182.43890 * 9 8 6 40 40 H 1.08998 * 109.52556 * 62.24668 * 9 8 6 41 41 H 1.09005 * 109.50663 * 177.59783 * 10 9 8 42 42 H 1.08995 * 109.50484 * 297.71491 * 10 9 8 43 43 H 1.08999 * 109.46085 * 60.83866 * 11 10 9 44 44 H 1.08997 * 109.46353 * 180.80455 * 11 10 9 45 45 H 1.09008 * 109.46831 * 58.63485 * 13 12 11 46 46 H 1.08993 * 109.47227 * 178.63008 * 13 12 11 47 47 H 1.08993 * 109.46998 * 66.79303 * 16 14 13 48 48 H 1.09004 * 109.46400 * 186.78760 * 16 14 13 49 49 H 1.08999 * 109.47356 * 306.78330 * 16 14 13 50 50 H 1.09007 * 109.46829 * 304.99438 * 17 14 13 51 51 H 1.08997 * 109.47388 * 64.99125 * 17 14 13 52 52 H 0.96995 * 119.99832 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6352 -2.1954 1.1882 6 6 2.2556 -2.9440 2.3695 7 1 3.3357 -2.7976 2.3654 8 6 1.6728 -2.4047 3.6777 9 6 2.2814 -3.1702 4.8558 10 6 1.9965 -4.6649 4.6849 11 6 2.5699 -5.1388 3.3474 12 7 1.9558 -4.3768 2.2526 13 6 2.3790 -4.8983 0.9461 14 6 3.8969 -4.7621 0.8100 15 1 4.3587 -4.8432 1.7940 16 6 4.2339 -3.4003 0.1992 17 6 4.4294 -5.8736 -0.0966 18 6 5.9348 -5.8144 -0.1326 19 1 6.4593 -5.0594 0.4342 20 6 6.6425 -6.7244 -0.8890 21 7 7.9563 -6.6724 -0.9208 22 14 5.7355 -8.0308 -1.8687 23 1 5.4344 -7.5110 -3.2268 24 1 6.5841 -9.2443 -1.9800 25 1 4.4668 -8.3756 -1.1782 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6054 -0.2616 2.1370 34 1 3.1263 -0.6442 1.2952 35 1 1.9908 -2.6313 0.2546 36 1 0.5493 -2.2763 1.2365 37 1 0.5910 -2.5383 3.6767 38 1 1.9083 -1.3446 3.7720 39 1 1.8370 -2.8190 5.7871 40 1 3.3585 -3.0051 4.8801 41 1 2.4639 -5.2199 5.4983 42 1 0.9199 -4.8342 4.6997 43 1 3.6485 -4.9820 3.3387 44 1 2.3563 -6.1995 3.2160 45 1 2.0999 -5.9490 0.8666 46 1 1.8908 -4.3317 0.1533 47 1 3.9631 -2.6107 0.9000 48 1 5.3026 -3.3503 -0.0093 49 1 3.6763 -3.2701 -0.7283 50 1 4.1130 -6.8418 0.2914 51 1 4.0363 -5.7400 -1.1044 52 1 8.4542 -7.3127 -1.4526 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001659027427.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:23 Heat of formation + Delta-G solvation = -37.300163 kcal Electronic energy + Delta-G solvation = -24132.370831 eV Core-core repulsion = 21130.178265 eV Total energy + Delta-G solvation = -3002.192566 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.87584 -36.75222 -35.55967 -32.97081 -32.51622 -31.41334 -28.52566 -27.54332 -27.24200 -26.11503 -24.15748 -23.49083 -21.84257 -20.77426 -19.96913 -19.90085 -18.55280 -16.77439 -15.90090 -15.47191 -15.06560 -14.49902 -14.44759 -14.07672 -13.98296 -13.84346 -13.51434 -13.11632 -12.84712 -12.71021 -12.52202 -12.30785 -12.16041 -12.08925 -11.76418 -11.67936 -11.53890 -11.28648 -11.03886 -10.90418 -10.77361 -10.75270 -10.65445 -10.52414 -10.47362 -10.32566 -10.06451 -9.97195 -9.75219 -9.58047 -9.52095 -9.11040 -8.51240 -7.71285 -6.02015 -3.98802 3.31580 3.39131 3.43035 4.18322 4.47144 4.73785 4.83344 4.90428 4.95225 5.00538 5.03646 5.24528 5.31959 5.45012 5.46971 5.51378 5.53770 5.61155 5.64921 5.68673 5.73432 5.74767 5.78194 5.86426 5.87275 5.91029 5.95166 6.02053 6.05328 6.09632 6.12747 6.18098 6.20310 6.23100 6.29285 6.32847 6.38896 6.42462 6.47643 6.53651 6.60692 6.80713 6.97495 7.10944 7.29396 7.40828 7.51088 7.56162 7.82976 8.57386 9.03127 9.61275 11.11523 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.014159 B = 0.004975 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.123905 B = 5626.593202 C = 6849.378956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.113 4.113 5 C -0.121 4.121 6 C 0.079 3.921 7 H 0.054 0.946 8 C -0.111 4.111 9 C -0.122 4.122 10 C -0.115 4.115 11 C 0.050 3.950 12 N -0.532 5.532 13 C 0.050 3.950 14 C -0.113 4.113 15 H 0.065 0.935 16 C -0.145 4.145 17 C -0.006 4.006 18 C -0.513 4.513 19 H 0.071 0.929 20 C 0.065 3.935 21 N -0.906 5.906 22 Si 0.878 3.122 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.266 1.266 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.043 0.957 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.047 0.953 48 H 0.064 0.936 49 H 0.042 0.958 50 H 0.013 0.987 51 H 0.010 0.990 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.504 11.772 7.336 20.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.204 4.204 4 C -0.151 4.151 5 C -0.158 4.158 6 C -0.029 4.029 7 H 0.071 0.929 8 C -0.148 4.148 9 C -0.159 4.159 10 C -0.152 4.152 11 C -0.078 4.078 12 N -0.255 5.255 13 C -0.078 4.078 14 C -0.132 4.132 15 H 0.083 0.917 16 C -0.202 4.202 17 C -0.044 4.044 18 C -0.551 4.551 19 H 0.089 0.911 20 C -0.136 4.136 21 N -0.545 5.545 22 Si 0.706 3.294 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.191 1.191 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.066 0.934 48 H 0.083 0.917 49 H 0.061 0.939 50 H 0.031 0.969 51 H 0.028 0.972 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.872 11.623 7.305 20.985 hybrid contribution 0.671 -0.734 -0.699 1.216 sum -15.201 10.889 6.606 19.831 Atomic orbital electron populations 1.21874 0.95517 1.01884 1.01157 1.21120 0.95702 0.95946 0.98838 1.21841 1.01061 0.96226 1.01309 1.21670 1.00855 0.95226 0.97329 1.21879 1.00904 0.94207 0.98855 1.21768 0.98407 0.88131 0.94565 0.92879 1.21662 1.00649 0.98624 0.93905 1.21582 1.00675 0.95714 0.97979 1.21572 1.01373 0.95683 0.96608 1.22094 0.97254 0.97895 0.90538 1.62237 1.58465 1.02206 1.02602 1.22520 0.94962 1.00007 0.90301 1.21662 0.94343 0.96891 1.00337 0.91729 1.22149 1.02724 0.96143 0.99197 1.19594 0.97047 0.93369 0.94352 1.21147 0.89586 1.15699 1.28631 0.91091 1.25032 0.94683 0.97421 0.96428 1.69920 1.05862 1.37214 1.41536 0.86805 0.80177 0.81641 0.80809 1.20392 1.21514 1.19058 0.92316 0.93010 0.93215 0.91163 0.92683 0.93018 0.92971 0.92126 0.91984 0.90492 0.91617 0.91646 0.91936 0.92383 0.92341 0.92027 0.91593 0.93910 0.91001 0.91325 0.90835 0.93391 0.91730 0.93924 0.96896 0.97167 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.95 37.16 0.33 -1.00 16 2 C -0.10 -0.97 2.92 -90.62 -0.26 -1.23 16 3 C -0.15 -1.33 9.19 37.16 0.34 -0.99 16 4 C -0.11 -1.20 4.19 -26.73 -0.11 -1.31 16 5 C -0.12 -1.45 3.14 -26.73 -0.08 -1.54 16 6 C 0.08 1.04 1.22 -67.72 -0.08 0.96 16 7 H 0.05 0.80 5.51 -51.93 -0.29 0.52 16 8 C -0.11 -1.25 5.09 -26.65 -0.14 -1.39 16 9 C -0.12 -1.36 6.00 -26.61 -0.16 -1.52 16 10 C -0.11 -1.36 6.09 -26.65 -0.16 -1.52 16 11 C 0.05 0.72 5.04 -3.83 -0.02 0.70 16 12 N -0.53 -7.75 4.69 -226.69 -1.06 -8.82 16 13 C 0.05 0.81 4.96 -3.83 -0.02 0.80 16 14 C -0.11 -2.19 1.79 -90.62 -0.16 -2.35 16 15 H 0.06 1.33 5.65 -51.93 -0.29 1.04 16 16 C -0.15 -2.66 7.53 37.16 0.28 -2.38 16 17 C -0.01 -0.14 3.40 -27.88 -0.09 -0.23 16 18 C -0.51 -14.51 8.87 -34.44 -0.31 -14.81 16 19 H 0.07 2.17 7.33 -52.49 -0.38 1.78 16 20 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 21 N -0.91 -28.11 13.96 55.43 0.77 -27.34 16 22 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 26 H 0.06 0.55 6.68 -51.93 -0.35 0.21 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.60 6.83 -51.93 -0.35 0.24 16 34 H 0.06 0.71 7.46 -51.93 -0.39 0.32 16 35 H 0.08 1.03 4.12 -51.93 -0.21 0.82 16 36 H 0.07 0.78 6.83 -51.93 -0.35 0.42 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.64 6.71 -51.93 -0.35 0.30 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.04 0.69 6.17 -51.93 -0.32 0.37 16 44 H 0.07 1.05 8.12 -51.93 -0.42 0.63 16 45 H 0.07 1.17 7.74 -51.92 -0.40 0.77 16 46 H 0.07 1.15 5.63 -51.93 -0.29 0.86 16 47 H 0.05 0.76 3.53 -51.93 -0.18 0.58 16 48 H 0.06 1.37 6.78 -51.93 -0.35 1.02 16 49 H 0.04 0.74 7.39 -51.93 -0.38 0.36 16 50 H 0.01 0.31 7.06 -51.92 -0.37 -0.06 16 51 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 52 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 365.71 15.07 5.51 5.51 Total: -1.00 -29.42 365.71 -10.10 -39.52 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -9.90 Total: -0.16 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: -0.74 Total: -26.01 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.29 Total: -36.16 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.42 -10.10 -39.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659027427.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.217 kcal (2) G-P(sol) polarization free energy of solvation -29.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds