Wall clock time and date at job start Tue Mar 31 2020 06:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46937 * 2 1 4 4 C 1.53000 * 109.47018 * 119.99321 * 2 1 3 5 5 C 1.53007 * 109.46943 * 65.00232 * 4 2 1 6 6 C 1.52998 * 109.46948 * 174.73356 * 5 4 2 7 7 H 1.08996 * 109.46229 * 304.41858 * 6 5 4 8 8 C 1.53037 * 109.46198 * 64.40338 * 6 5 4 9 9 C 1.53116 * 109.27754 * 179.19552 * 8 6 5 10 10 C 1.53116 * 109.15932 * 302.33955 * 9 8 6 11 11 C 1.53045 * 109.27777 * 57.65704 * 10 9 8 12 12 N 1.46847 * 109.52226 * 300.81985 * 11 10 9 13 13 C 1.46897 * 110.99913 * 185.83691 * 12 11 10 14 14 C 1.52998 * 109.47111 * 298.63553 * 13 12 11 15 15 H 1.08996 * 109.47552 * 30.54892 * 14 13 12 16 16 C 1.53005 * 109.46665 * 270.54767 * 14 13 12 17 17 C 1.53004 * 109.46997 * 150.55491 * 14 13 12 18 18 C 1.50700 * 109.46930 * 184.99942 * 17 14 13 19 19 H 1.08001 * 120.00249 * 359.97438 * 18 17 14 20 20 C 1.37880 * 119.99699 * 179.97438 * 18 17 14 21 21 N 1.31520 * 119.99600 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 120.00175 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47119 * 90.00322 * 22 20 18 24 24 H 1.48503 * 109.47083 * 210.00399 * 22 20 18 25 25 H 1.48503 * 109.47319 * 330.00207 * 22 20 18 26 26 H 1.09003 * 109.46815 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47444 * 300.00223 * 1 2 3 28 28 H 1.09000 * 109.46959 * 60.00243 * 1 2 3 29 29 H 1.08993 * 109.47273 * 239.99718 * 2 1 3 30 30 H 1.08999 * 109.47170 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.46867 * 299.99836 * 3 2 1 32 32 H 1.08993 * 109.47369 * 59.99777 * 3 2 1 33 33 H 1.08994 * 109.47654 * 305.00348 * 4 2 1 34 34 H 1.08999 * 109.46916 * 184.99951 * 4 2 1 35 35 H 1.08998 * 109.46690 * 54.73263 * 5 4 2 36 36 H 1.08998 * 109.47152 * 294.73751 * 5 4 2 37 37 H 1.08996 * 109.50881 * 59.24932 * 8 6 5 38 38 H 1.09003 * 109.53288 * 299.15113 * 8 6 5 39 39 H 1.08996 * 109.52322 * 182.43890 * 9 8 6 40 40 H 1.08998 * 109.52556 * 62.24668 * 9 8 6 41 41 H 1.09005 * 109.50663 * 177.59783 * 10 9 8 42 42 H 1.08995 * 109.50484 * 297.71491 * 10 9 8 43 43 H 1.08999 * 109.46085 * 60.83866 * 11 10 9 44 44 H 1.08997 * 109.46353 * 180.80455 * 11 10 9 45 45 H 1.09008 * 109.46831 * 58.63485 * 13 12 11 46 46 H 1.08993 * 109.47227 * 178.63008 * 13 12 11 47 47 H 1.08993 * 109.46998 * 66.79303 * 16 14 13 48 48 H 1.09004 * 109.46400 * 186.78760 * 16 14 13 49 49 H 1.08999 * 109.47356 * 306.78330 * 16 14 13 50 50 H 1.09007 * 109.46829 * 304.99438 * 17 14 13 51 51 H 1.08997 * 109.47388 * 64.99125 * 17 14 13 52 52 H 0.96995 * 119.99832 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6352 -2.1954 1.1882 6 6 2.2556 -2.9440 2.3695 7 1 3.3357 -2.7976 2.3654 8 6 1.6728 -2.4047 3.6777 9 6 2.2814 -3.1702 4.8558 10 6 1.9965 -4.6649 4.6849 11 6 2.5699 -5.1388 3.3474 12 7 1.9558 -4.3768 2.2526 13 6 2.3790 -4.8983 0.9461 14 6 3.8969 -4.7621 0.8100 15 1 4.3587 -4.8432 1.7940 16 6 4.2339 -3.4003 0.1992 17 6 4.4294 -5.8736 -0.0966 18 6 5.9348 -5.8144 -0.1326 19 1 6.4593 -5.0594 0.4342 20 6 6.6425 -6.7244 -0.8890 21 7 7.9563 -6.6724 -0.9208 22 14 5.7355 -8.0308 -1.8687 23 1 5.4344 -7.5110 -3.2268 24 1 6.5841 -9.2443 -1.9800 25 1 4.4668 -8.3756 -1.1782 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6054 -0.2616 2.1370 34 1 3.1263 -0.6442 1.2952 35 1 1.9908 -2.6313 0.2546 36 1 0.5493 -2.2763 1.2365 37 1 0.5910 -2.5383 3.6767 38 1 1.9083 -1.3446 3.7720 39 1 1.8370 -2.8190 5.7871 40 1 3.3585 -3.0051 4.8801 41 1 2.4639 -5.2199 5.4983 42 1 0.9199 -4.8342 4.6997 43 1 3.6485 -4.9820 3.3387 44 1 2.3563 -6.1995 3.2160 45 1 2.0999 -5.9490 0.8666 46 1 1.8908 -4.3317 0.1533 47 1 3.9631 -2.6107 0.9000 48 1 5.3026 -3.3503 -0.0093 49 1 3.6763 -3.2701 -0.7283 50 1 4.1130 -6.8418 0.2914 51 1 4.0363 -5.7400 -1.1044 52 1 8.4542 -7.3127 -1.4526 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001659027427.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:22 Heat of formation + Delta-G solvation = -52.855845 kcal Electronic energy + Delta-G solvation = -24133.045376 eV Core-core repulsion = 21130.178265 eV Total energy + Delta-G solvation = -3002.867111 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.03785 -37.63570 -37.00070 -34.76818 -33.57122 -33.02228 -29.46951 -29.44738 -27.95934 -27.41259 -25.23727 -24.95655 -23.29994 -21.81522 -21.35167 -20.72023 -19.91275 -18.90555 -17.12937 -16.53458 -16.32356 -16.04148 -15.54725 -15.39157 -15.16575 -14.88276 -14.69399 -14.50695 -14.19752 -14.09505 -13.78566 -13.44879 -13.31732 -13.21205 -12.99572 -12.85519 -12.76298 -12.60488 -12.44616 -12.18025 -12.02288 -11.93990 -11.81332 -11.68392 -11.58101 -11.41848 -11.39774 -11.34860 -11.22575 -11.16715 -10.95963 -10.77312 -10.70117 -9.02036 -8.29104 -6.31460 1.33238 1.34965 1.46917 2.35011 3.03887 3.06277 3.79296 3.91626 3.99880 4.06010 4.08247 4.15965 4.17590 4.22271 4.33562 4.36420 4.48306 4.54705 4.59439 4.69959 4.76291 4.84293 4.85600 4.87301 4.88404 4.92331 4.93486 4.96107 5.03960 5.06542 5.08960 5.13859 5.15308 5.17195 5.20539 5.25632 5.29781 5.36230 5.37289 5.41235 5.44398 5.50983 5.53357 5.60557 5.65008 5.69313 5.70876 6.22398 6.32422 6.33847 6.75338 7.32243 8.87856 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.014159 B = 0.004975 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.123905 B = 5626.593202 C = 6849.378956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 C -0.146 4.146 4 C -0.108 4.108 5 C -0.115 4.115 6 C 0.077 3.923 7 H 0.030 0.970 8 C -0.105 4.105 9 C -0.122 4.122 10 C -0.109 4.109 11 C 0.047 3.953 12 N -0.524 5.524 13 C 0.059 3.941 14 C -0.105 4.105 15 H 0.046 0.954 16 C -0.135 4.135 17 C -0.002 4.002 18 C -0.518 4.518 19 H 0.029 0.971 20 C 0.002 3.998 21 N -0.954 5.954 22 Si 0.948 3.052 23 H -0.267 1.267 24 H -0.285 1.285 25 H -0.248 1.248 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.046 0.954 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.017 0.983 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.071 0.929 48 H 0.025 0.975 49 H 0.053 0.947 50 H 0.013 0.987 51 H 0.016 0.984 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.587 12.209 7.640 23.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 C -0.203 4.203 4 C -0.145 4.145 5 C -0.152 4.152 6 C -0.031 4.031 7 H 0.048 0.952 8 C -0.143 4.143 9 C -0.160 4.160 10 C -0.146 4.146 11 C -0.081 4.081 12 N -0.247 5.247 13 C -0.069 4.069 14 C -0.125 4.125 15 H 0.065 0.935 16 C -0.192 4.192 17 C -0.040 4.040 18 C -0.556 4.556 19 H 0.047 0.953 20 C -0.194 4.194 21 N -0.595 5.595 22 Si 0.771 3.229 23 H -0.192 1.192 24 H -0.211 1.211 25 H -0.171 1.171 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.065 0.935 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.035 0.965 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.105 0.895 47 H 0.090 0.910 48 H 0.044 0.956 49 H 0.072 0.928 50 H 0.031 0.969 51 H 0.035 0.965 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.971 12.076 7.623 23.745 hybrid contribution 1.707 -0.804 -0.731 2.024 sum -17.264 11.272 6.892 21.739 Atomic orbital electron populations 1.21844 0.94533 1.01861 1.01880 1.21110 0.96509 0.96224 0.97819 1.21828 1.00637 0.95768 1.02088 1.21623 1.00120 0.94449 0.98355 1.21816 1.01202 0.94786 0.97407 1.21848 0.97282 0.87409 0.96518 0.95236 1.21640 1.00825 0.99308 0.92527 1.21600 1.00159 0.95199 0.99002 1.21543 1.01696 0.96311 0.95082 1.22150 0.95918 0.97935 0.92109 1.62324 1.57695 1.03035 1.01658 1.22377 0.92175 1.00345 0.91990 1.21557 0.96676 0.95845 0.98406 0.93531 1.22056 1.00206 0.96564 1.00328 1.19548 0.93901 0.94958 0.95599 1.21440 0.92113 1.14429 1.27635 0.95250 1.25999 0.95466 1.00101 0.97806 1.70077 1.07819 1.38651 1.42998 0.85691 0.79369 0.78349 0.79442 1.19193 1.21108 1.17141 0.92676 0.92159 0.92667 0.92465 0.93383 0.92394 0.92062 0.90791 0.93258 0.91997 0.90745 0.90888 0.90546 0.90188 0.93511 0.91057 0.90717 0.96459 0.91427 0.91579 0.89529 0.91009 0.95560 0.92823 0.96888 0.96538 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.95 71.98 0.64 -1.61 16 2 C -0.10 -1.78 2.92 -10.79 -0.03 -1.81 16 3 C -0.15 -2.39 9.19 71.98 0.66 -1.72 16 4 C -0.11 -2.09 4.19 30.60 0.13 -1.96 16 5 C -0.11 -2.54 3.14 30.60 0.10 -2.45 16 6 C 0.08 1.93 1.22 44.94 0.05 1.98 16 7 H 0.03 0.89 5.51 -2.39 -0.01 0.88 16 8 C -0.11 -2.12 5.09 30.65 0.16 -1.96 16 9 C -0.12 -2.46 6.00 30.67 0.18 -2.28 16 10 C -0.11 -2.37 6.09 30.65 0.19 -2.18 16 11 C 0.05 1.33 5.04 86.33 0.44 1.76 16 12 N -0.52 -14.63 4.69 -871.11 -4.09 -18.71 16 13 C 0.06 1.88 4.96 86.30 0.43 2.31 16 14 C -0.10 -4.14 1.79 -10.79 -0.02 -4.16 16 15 H 0.05 2.01 5.65 -2.39 -0.01 1.99 16 16 C -0.13 -5.06 7.53 71.98 0.54 -4.52 16 17 C 0.00 -0.11 3.40 29.85 0.10 0.00 16 18 C -0.52 -30.41 8.87 25.60 0.23 -30.18 16 19 H 0.03 1.91 7.33 -2.91 -0.02 1.89 16 20 C 0.00 0.14 5.47 84.65 0.46 0.60 16 21 N -0.95 -61.14 13.96 21.45 0.30 -60.84 16 22 Si 0.95 45.33 27.47 68.60 1.88 47.21 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 24 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 25 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 26 H 0.05 0.90 6.68 -2.39 -0.02 0.89 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 1.25 6.83 -2.39 -0.02 1.24 16 34 H 0.05 1.08 7.46 -2.39 -0.02 1.07 16 35 H 0.06 1.57 4.12 -2.39 -0.01 1.56 16 36 H 0.07 1.55 6.83 -2.39 -0.02 1.54 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.08 1.35 6.71 -2.39 -0.02 1.33 16 39 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.02 0.58 6.17 -2.39 -0.01 0.56 16 44 H 0.07 1.94 8.12 -2.39 -0.02 1.92 16 45 H 0.07 2.15 7.74 -2.38 -0.02 2.13 16 46 H 0.09 2.56 5.63 -2.39 -0.01 2.54 16 47 H 0.07 2.33 3.53 -2.39 -0.01 2.32 16 48 H 0.03 1.16 6.78 -2.38 -0.02 1.14 16 49 H 0.05 1.86 7.39 -2.39 -0.02 1.85 16 50 H 0.01 0.61 7.06 -2.38 -0.02 0.60 16 51 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 52 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -65.13 365.71 3.15 -61.98 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.80 Total: 18.53 kcal Atomic # 6 Polarization: -52.43 SS G_CDS: 4.26 Total: -48.17 kcal Atomic # 7 Polarization: -75.76 SS G_CDS: -3.79 Total: -79.55 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.88 Total: 47.21 kcal Total: -65.13 3.15 -61.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659027427.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.122 kcal (2) G-P(sol) polarization free energy of solvation -65.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds