Wall clock time and date at job start Tue Mar 31 2020 06:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47370 * 2 1 4 4 C 1.52996 * 109.47139 * 120.00173 * 2 1 3 5 5 C 1.53000 * 109.47467 * 64.99798 * 4 2 1 6 6 N 1.46896 * 109.47354 * 183.74436 * 5 4 2 7 7 C 1.46905 * 111.00057 * 197.09671 * 6 5 4 8 8 C 1.52997 * 109.47171 * 72.24769 * 7 6 5 9 9 H 1.09003 * 109.47295 * 304.78086 * 8 7 6 10 10 C 1.53007 * 109.46643 * 64.77205 * 8 7 6 11 11 C 1.52996 * 109.47551 * 184.77340 * 8 7 6 12 12 C 1.50692 * 109.47605 * 175.00349 * 11 8 7 13 13 H 1.08012 * 119.99881 * 359.97438 * 12 11 8 14 14 C 1.37875 * 120.00460 * 179.97438 * 12 11 8 15 15 N 1.31514 * 119.99622 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00133 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47447 * 60.00283 * 16 14 12 18 18 H 1.48506 * 109.47319 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47516 * 299.99989 * 16 14 12 20 20 C 1.46898 * 110.99876 * 73.14673 * 6 5 4 21 21 C 1.55236 * 110.58309 * 188.59199 * 20 6 5 22 22 C 1.54892 * 102.59171 * 203.33711 * 21 20 6 23 23 C 1.54268 * 104.31103 * 37.93073 * 22 21 20 24 24 C 1.53878 * 106.59946 * 336.32649 * 23 22 21 25 25 H 1.08996 * 109.46588 * 299.99995 * 1 2 3 26 26 H 1.08996 * 109.46739 * 60.00016 * 1 2 3 27 27 H 1.08996 * 109.47179 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47050 * 239.99923 * 2 1 3 29 29 H 1.09003 * 109.47702 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47026 * 300.00206 * 3 2 1 31 31 H 1.09001 * 109.47097 * 59.99952 * 3 2 1 32 32 H 1.08995 * 109.47078 * 304.99928 * 4 2 1 33 33 H 1.09001 * 109.47441 * 184.99926 * 4 2 1 34 34 H 1.09006 * 109.46703 * 63.74345 * 5 4 2 35 35 H 1.09003 * 109.46944 * 303.75037 * 5 4 2 36 36 H 1.09000 * 109.46924 * 192.25038 * 7 6 5 37 37 H 1.09005 * 109.46727 * 312.25209 * 7 6 5 38 38 H 1.09001 * 109.46804 * 185.00953 * 10 8 7 39 39 H 1.09000 * 109.47273 * 305.00894 * 10 8 7 40 40 H 1.08998 * 109.47046 * 65.01416 * 10 8 7 41 41 H 1.09007 * 109.47036 * 295.00644 * 11 8 7 42 42 H 1.09001 * 109.47157 * 54.99943 * 11 8 7 43 43 H 0.97002 * 119.99688 * 179.97438 * 15 14 12 44 44 H 1.08999 * 110.43580 * 311.17755 * 20 6 5 45 45 H 1.09000 * 110.89986 * 85.04348 * 21 20 6 46 46 H 1.09009 * 110.76302 * 321.56846 * 21 20 6 47 47 H 1.08995 * 110.48351 * 279.18585 * 22 21 20 48 48 H 1.08998 * 110.48878 * 156.67438 * 22 21 20 49 49 H 1.09004 * 110.03525 * 95.60833 * 23 22 21 50 50 H 1.09001 * 110.03244 * 216.99532 * 23 22 21 51 51 H 1.08998 * 110.03737 * 119.28791 * 24 23 22 52 52 H 1.09004 * 110.03120 * 240.66736 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1880 6 7 2.0463 -2.8681 2.4275 7 6 2.0517 -4.3273 2.2579 8 6 3.2335 -4.7338 1.3754 9 1 3.1866 -4.1898 0.4320 10 6 4.5435 -4.3998 2.0919 11 6 3.1715 -6.2376 1.1007 12 6 4.2628 -6.6171 0.1334 13 1 4.9335 -5.8612 -0.2478 14 6 4.4053 -7.9293 -0.2650 15 7 3.5890 -8.8499 0.1995 16 14 5.7578 -8.3996 -1.4647 17 1 7.0792 -8.0567 -0.8802 18 1 5.6976 -9.8593 -1.7312 19 1 5.5715 -7.6566 -2.7369 20 6 1.1871 -2.4719 3.5512 21 6 1.7556 -3.0136 4.8903 22 6 0.5016 -3.0516 5.7988 23 6 -0.6355 -3.5056 4.8603 24 6 -0.1996 -3.1370 3.4313 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6054 -0.2618 2.1369 33 1 3.1264 -0.6444 1.2951 34 1 2.1234 -2.6712 0.3373 35 1 0.5537 -2.2709 1.0750 36 1 2.1445 -4.8060 3.2328 37 1 1.1208 -4.6415 1.7859 38 1 5.3834 -4.6066 1.4286 39 1 4.5487 -3.3450 2.3667 40 1 4.6318 -5.0100 2.9908 41 1 3.3075 -6.7835 2.0345 42 1 2.2017 -6.4888 0.6712 43 1 3.6891 -9.7730 -0.0812 44 1 1.0878 -1.3871 3.5904 45 1 2.5065 -2.3359 5.2965 46 1 2.1677 -4.0142 4.7586 47 1 0.2917 -2.0605 6.2008 48 1 0.6381 -3.7694 6.6076 49 1 -0.7783 -4.5833 4.9407 50 1 -1.5595 -2.9867 5.1151 51 1 -0.1309 -4.0357 2.8183 52 1 -0.9124 -2.4393 2.9918 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663685196.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:52 Heat of formation + Delta-G solvation = -42.477042 kcal Electronic energy + Delta-G solvation = -23698.732211 eV Core-core repulsion = 20696.315159 eV Total energy + Delta-G solvation = -3002.417052 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.48333 -36.77171 -35.74522 -33.68085 -31.89482 -29.22930 -28.62717 -27.41840 -27.24180 -26.48681 -24.90856 -22.97296 -22.14905 -20.39100 -20.04471 -19.42588 -18.32823 -16.31927 -16.02672 -15.64987 -15.22846 -14.85144 -14.43998 -14.35694 -13.73894 -13.64010 -13.41368 -13.29627 -12.84757 -12.50201 -12.31622 -12.21864 -11.97228 -11.64453 -11.59050 -11.41630 -11.26518 -11.14842 -11.00000 -10.88555 -10.81184 -10.77760 -10.72167 -10.62735 -10.47179 -10.33697 -10.18005 -10.14545 -10.03323 -9.47461 -9.05108 -8.90846 -8.28562 -7.82213 -5.93773 -3.94513 3.36753 3.40953 3.43648 4.12354 4.51391 4.69412 4.74869 4.80116 4.91211 4.94203 5.05406 5.28277 5.41559 5.43350 5.47065 5.51550 5.56790 5.59896 5.64827 5.69745 5.72870 5.73860 5.77012 5.83175 5.89151 5.91719 5.94532 6.01684 6.04750 6.08899 6.14061 6.19290 6.23744 6.31952 6.34833 6.41729 6.43504 6.46098 6.53116 6.67639 6.80344 7.10415 7.23567 7.28369 7.55003 7.56741 7.74310 7.91370 8.07006 8.51723 9.11786 9.68616 11.17773 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.012865 B = 0.004636 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.842310 B = 6038.878369 C = 7503.999053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 C -0.145 4.145 4 C -0.106 4.106 5 C 0.050 3.950 6 N -0.526 5.526 7 C 0.057 3.943 8 C -0.079 4.079 9 H 0.054 0.946 10 C -0.121 4.121 11 C 0.028 3.972 12 C -0.511 4.511 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.889 3.111 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.081 3.919 21 C -0.117 4.117 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.164 4.164 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.033 0.967 36 H 0.071 0.929 37 H 0.030 0.970 38 H 0.049 0.951 39 H 0.044 0.956 40 H 0.037 0.963 41 H 0.015 0.985 42 H 0.010 0.990 43 H 0.259 0.741 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.077 0.923 47 H 0.061 0.939 48 H 0.063 0.937 49 H 0.061 0.939 50 H 0.057 0.943 51 H 0.074 0.926 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.576 17.455 6.481 20.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.202 4.202 4 C -0.144 4.144 5 C -0.078 4.078 6 N -0.248 5.248 7 C -0.070 4.070 8 C -0.098 4.098 9 H 0.072 0.928 10 C -0.178 4.178 11 C -0.010 4.010 12 C -0.549 4.549 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.028 4.028 21 C -0.155 4.155 22 C -0.163 4.163 23 C -0.158 4.158 24 C -0.203 4.203 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.090 0.910 37 H 0.048 0.952 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.033 0.967 42 H 0.029 0.971 43 H 0.069 0.931 44 H 0.099 0.901 45 H 0.085 0.915 46 H 0.095 0.905 47 H 0.080 0.920 48 H 0.082 0.918 49 H 0.080 0.920 50 H 0.076 0.924 51 H 0.092 0.908 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.125 17.409 6.571 19.925 hybrid contribution -0.227 -0.710 -0.901 1.169 sum -7.352 16.699 5.670 19.106 Atomic orbital electron populations 1.21890 0.95641 1.01810 1.01183 1.21106 0.95607 0.96044 0.98988 1.21816 1.01014 0.96102 1.01275 1.21596 1.01451 0.94546 0.96777 1.22213 0.98115 0.94327 0.93134 1.62135 1.50752 1.08109 1.03779 1.22367 0.98128 0.85885 1.00575 1.21201 0.92890 0.99286 0.96385 0.92788 1.21561 0.97585 0.99247 0.99425 1.19120 0.96724 0.88547 0.96575 1.21201 1.14747 0.93106 1.25839 0.92701 1.25008 0.96164 0.96767 0.96558 1.69958 1.37741 1.01481 1.44581 0.86715 0.82674 0.77223 0.81715 1.20280 1.21407 1.20353 1.22652 0.89681 0.98963 0.91476 1.22644 0.96741 1.02123 0.93993 1.22338 0.95289 1.00830 0.97805 1.22035 0.97971 1.00979 0.94782 1.22891 0.98378 1.01547 0.97466 0.93050 0.93122 0.92436 0.91120 0.92673 0.93046 0.92983 0.92420 0.91337 0.90374 0.94841 0.91037 0.95197 0.93225 0.93706 0.94338 0.96710 0.97125 0.93112 0.90142 0.91479 0.90483 0.92044 0.91825 0.91974 0.92433 0.90760 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.95 37.16 0.33 -1.09 16 2 C -0.10 -1.01 2.92 -90.62 -0.26 -1.28 16 3 C -0.14 -1.31 9.19 37.15 0.34 -0.97 16 4 C -0.11 -1.22 4.82 -26.73 -0.13 -1.35 16 5 C 0.05 0.68 4.57 -3.83 -0.02 0.66 16 6 N -0.53 -7.65 3.77 -224.44 -0.85 -8.50 16 7 C 0.06 1.00 3.22 -3.82 -0.01 0.98 16 8 C -0.08 -1.62 2.35 -90.62 -0.21 -1.84 16 9 H 0.05 1.14 6.43 -51.93 -0.33 0.81 16 10 C -0.12 -2.38 8.86 37.16 0.33 -2.05 16 11 C 0.03 0.72 4.45 -27.89 -0.12 0.60 16 12 C -0.51 -14.42 8.47 -34.44 -0.29 -14.71 16 13 H 0.05 1.52 7.06 -52.48 -0.37 1.14 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 16 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.08 1.02 2.80 -65.86 -0.18 0.84 16 21 C -0.12 -1.43 6.41 -24.55 -0.16 -1.59 16 22 C -0.12 -1.30 6.82 -25.07 -0.17 -1.47 16 23 C -0.12 -1.31 6.80 -25.61 -0.17 -1.48 16 24 C -0.16 -2.00 5.40 -25.61 -0.14 -2.14 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.59 6.49 -51.93 -0.34 0.26 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.64 6.56 -51.93 -0.34 0.30 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.08 1.21 6.24 -51.93 -0.32 0.88 16 35 H 0.03 0.45 5.60 -51.93 -0.29 0.16 16 36 H 0.07 1.26 5.82 -51.93 -0.30 0.96 16 37 H 0.03 0.54 6.49 -51.93 -0.34 0.20 16 38 H 0.05 1.04 7.10 -51.93 -0.37 0.67 16 39 H 0.04 0.80 7.61 -51.93 -0.40 0.40 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.01 0.40 8.14 -51.92 -0.42 -0.02 16 42 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 44 H 0.08 0.96 6.47 -51.93 -0.34 0.63 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.08 1.07 5.99 -51.92 -0.31 0.76 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.07 1.05 5.48 -51.93 -0.28 0.76 16 52 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 381.36 15.07 5.75 5.75 Total: -1.00 -28.85 381.36 -10.59 -39.44 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -10.23 Total: -1.72 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: -0.97 Total: -25.39 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: -0.11 Total: -34.96 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.85 -10.59 -39.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663685196.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.036 kcal (2) G-P(sol) polarization free energy of solvation -28.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds