Wall clock time and date at job start Tue Mar 31 2020 06:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47370 * 2 1 4 4 C 1.52996 * 109.47139 * 120.00173 * 2 1 3 5 5 C 1.53000 * 109.47467 * 64.99798 * 4 2 1 6 6 N 1.46896 * 109.47354 * 183.74436 * 5 4 2 7 7 C 1.46905 * 111.00057 * 197.09671 * 6 5 4 8 8 C 1.52997 * 109.47171 * 72.24769 * 7 6 5 9 9 H 1.09003 * 109.47295 * 304.78086 * 8 7 6 10 10 C 1.53007 * 109.46643 * 64.77205 * 8 7 6 11 11 C 1.52996 * 109.47551 * 184.77340 * 8 7 6 12 12 C 1.50692 * 109.47605 * 175.00349 * 11 8 7 13 13 H 1.08012 * 119.99881 * 359.97438 * 12 11 8 14 14 C 1.37875 * 120.00460 * 179.97438 * 12 11 8 15 15 N 1.31514 * 119.99622 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00133 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47447 * 60.00283 * 16 14 12 18 18 H 1.48506 * 109.47319 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47516 * 299.99989 * 16 14 12 20 20 C 1.46898 * 110.99876 * 73.14673 * 6 5 4 21 21 C 1.55236 * 110.58309 * 188.59199 * 20 6 5 22 22 C 1.54892 * 102.59171 * 203.33711 * 21 20 6 23 23 C 1.54268 * 104.31103 * 37.93073 * 22 21 20 24 24 C 1.53878 * 106.59946 * 336.32649 * 23 22 21 25 25 H 1.08996 * 109.46588 * 299.99995 * 1 2 3 26 26 H 1.08996 * 109.46739 * 60.00016 * 1 2 3 27 27 H 1.08996 * 109.47179 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47050 * 239.99923 * 2 1 3 29 29 H 1.09003 * 109.47702 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47026 * 300.00206 * 3 2 1 31 31 H 1.09001 * 109.47097 * 59.99952 * 3 2 1 32 32 H 1.08995 * 109.47078 * 304.99928 * 4 2 1 33 33 H 1.09001 * 109.47441 * 184.99926 * 4 2 1 34 34 H 1.09006 * 109.46703 * 63.74345 * 5 4 2 35 35 H 1.09003 * 109.46944 * 303.75037 * 5 4 2 36 36 H 1.09000 * 109.46924 * 192.25038 * 7 6 5 37 37 H 1.09005 * 109.46727 * 312.25209 * 7 6 5 38 38 H 1.09001 * 109.46804 * 185.00953 * 10 8 7 39 39 H 1.09000 * 109.47273 * 305.00894 * 10 8 7 40 40 H 1.08998 * 109.47046 * 65.01416 * 10 8 7 41 41 H 1.09007 * 109.47036 * 295.00644 * 11 8 7 42 42 H 1.09001 * 109.47157 * 54.99943 * 11 8 7 43 43 H 0.97002 * 119.99688 * 179.97438 * 15 14 12 44 44 H 1.08999 * 110.43580 * 311.17755 * 20 6 5 45 45 H 1.09000 * 110.89986 * 85.04348 * 21 20 6 46 46 H 1.09009 * 110.76302 * 321.56846 * 21 20 6 47 47 H 1.08995 * 110.48351 * 279.18585 * 22 21 20 48 48 H 1.08998 * 110.48878 * 156.67438 * 22 21 20 49 49 H 1.09004 * 110.03525 * 95.60833 * 23 22 21 50 50 H 1.09001 * 110.03244 * 216.99532 * 23 22 21 51 51 H 1.08998 * 110.03737 * 119.28791 * 24 23 22 52 52 H 1.09004 * 110.03120 * 240.66736 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1880 6 7 2.0463 -2.8681 2.4275 7 6 2.0517 -4.3273 2.2579 8 6 3.2335 -4.7338 1.3754 9 1 3.1866 -4.1898 0.4320 10 6 4.5435 -4.3998 2.0919 11 6 3.1715 -6.2376 1.1007 12 6 4.2628 -6.6171 0.1334 13 1 4.9335 -5.8612 -0.2478 14 6 4.4053 -7.9293 -0.2650 15 7 3.5890 -8.8499 0.1995 16 14 5.7578 -8.3996 -1.4647 17 1 7.0792 -8.0567 -0.8802 18 1 5.6976 -9.8593 -1.7312 19 1 5.5715 -7.6566 -2.7369 20 6 1.1871 -2.4719 3.5512 21 6 1.7556 -3.0136 4.8903 22 6 0.5016 -3.0516 5.7988 23 6 -0.6355 -3.5056 4.8603 24 6 -0.1996 -3.1370 3.4313 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6054 -0.2618 2.1369 33 1 3.1264 -0.6444 1.2951 34 1 2.1234 -2.6712 0.3373 35 1 0.5537 -2.2709 1.0750 36 1 2.1445 -4.8060 3.2328 37 1 1.1208 -4.6415 1.7859 38 1 5.3834 -4.6066 1.4286 39 1 4.5487 -3.3450 2.3667 40 1 4.6318 -5.0100 2.9908 41 1 3.3075 -6.7835 2.0345 42 1 2.2017 -6.4888 0.6712 43 1 3.6891 -9.7730 -0.0812 44 1 1.0878 -1.3871 3.5904 45 1 2.5065 -2.3359 5.2965 46 1 2.1677 -4.0142 4.7586 47 1 0.2917 -2.0605 6.2008 48 1 0.6381 -3.7694 6.6076 49 1 -0.7783 -4.5833 4.9407 50 1 -1.5595 -2.9867 5.1151 51 1 -0.1309 -4.0357 2.8183 52 1 -0.9124 -2.4393 2.9918 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663685196.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:51 Heat of formation + Delta-G solvation = -55.626838 kcal Electronic energy + Delta-G solvation = -23699.302429 eV Core-core repulsion = 20696.315159 eV Total energy + Delta-G solvation = -3002.987270 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.61752 -37.68208 -37.22142 -35.22508 -33.80258 -30.27465 -29.57993 -29.09984 -28.02186 -27.98542 -26.32256 -24.71210 -23.33243 -21.32260 -21.14101 -20.75025 -19.59732 -18.43329 -17.20835 -16.75623 -16.43389 -16.19260 -15.92401 -15.70523 -14.80553 -14.70066 -14.54068 -14.43369 -14.32655 -13.89560 -13.77836 -13.31476 -13.22061 -13.00094 -12.80691 -12.75818 -12.57389 -12.45483 -12.40819 -12.25341 -12.08604 -12.03670 -11.91121 -11.76002 -11.63222 -11.52561 -11.47324 -11.33645 -11.17706 -11.06510 -10.94439 -10.84519 -10.52162 -9.04728 -8.16912 -6.26089 1.39428 1.42311 1.49960 2.42008 2.96934 3.16278 3.73332 3.80503 3.86793 4.05968 4.09685 4.10812 4.17430 4.30945 4.40862 4.52200 4.54480 4.57197 4.61093 4.65804 4.75416 4.76754 4.84334 4.85636 4.86694 4.91465 4.95903 4.97154 5.02109 5.06777 5.06813 5.10939 5.19482 5.21424 5.25123 5.30016 5.35872 5.38212 5.42508 5.49169 5.50532 5.52845 5.54574 5.55882 5.59259 5.82420 5.89859 6.21184 6.34121 6.39055 6.89419 7.42065 8.95004 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.012865 B = 0.004636 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.842310 B = 6038.878369 C = 7503.999053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 C -0.141 4.141 4 C -0.095 4.095 5 C 0.051 3.949 6 N -0.526 5.526 7 C 0.074 3.926 8 C -0.070 4.070 9 H 0.049 0.951 10 C -0.109 4.109 11 C 0.035 3.965 12 C -0.528 4.528 13 H 0.059 0.941 14 C -0.001 4.001 15 N -0.935 5.935 16 Si 0.959 3.041 17 H -0.267 1.267 18 H -0.284 1.284 19 H -0.268 1.268 20 C 0.082 3.918 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.162 4.162 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.037 0.963 36 H 0.067 0.933 37 H 0.017 0.983 38 H 0.034 0.966 39 H 0.067 0.933 40 H 0.032 0.968 41 H -0.012 1.012 42 H -0.019 1.019 43 H 0.262 0.738 44 H 0.098 0.902 45 H 0.075 0.925 46 H 0.054 0.946 47 H 0.080 0.920 48 H 0.068 0.932 49 H 0.051 0.949 50 H 0.075 0.925 51 H 0.048 0.952 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.421 19.689 6.853 22.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.199 4.199 4 C -0.133 4.133 5 C -0.076 4.076 6 N -0.248 5.248 7 C -0.054 4.054 8 C -0.089 4.089 9 H 0.067 0.933 10 C -0.166 4.166 11 C -0.002 4.002 12 C -0.566 4.566 13 H 0.077 0.923 14 C -0.198 4.198 15 N -0.576 5.576 16 Si 0.784 3.216 17 H -0.192 1.192 18 H -0.209 1.209 19 H -0.193 1.193 20 C -0.027 4.027 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.201 4.201 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.035 0.965 38 H 0.053 0.947 39 H 0.086 0.914 40 H 0.052 0.948 41 H 0.007 0.993 42 H 0.000 1.000 43 H 0.070 0.930 44 H 0.116 0.884 45 H 0.094 0.906 46 H 0.072 0.928 47 H 0.099 0.901 48 H 0.086 0.914 49 H 0.070 0.930 50 H 0.093 0.907 51 H 0.067 0.933 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.971 19.665 6.947 21.990 hybrid contribution -0.321 -1.407 -1.009 1.761 sum -7.293 18.257 5.938 20.537 Atomic orbital electron populations 1.21864 0.94988 1.01343 1.02073 1.21094 0.96146 0.96715 0.97755 1.21781 1.00912 0.95064 1.02104 1.21508 1.00970 0.92892 0.97946 1.22217 0.98081 0.95488 0.91834 1.62102 1.51874 1.05889 1.04915 1.22016 0.95921 0.88150 0.99294 1.21004 0.95133 0.95553 0.97164 0.93302 1.21437 0.96113 1.00504 0.98556 1.18993 0.94673 0.91914 0.94655 1.21584 1.15250 0.93547 1.26225 0.92309 1.25933 0.98680 0.96744 0.98452 1.70099 1.39602 1.01886 1.46025 0.85586 0.79605 0.77004 0.79384 1.19199 1.20929 1.19311 1.22759 0.89423 0.99841 0.90640 1.22641 0.97814 1.00933 0.94280 1.22317 0.93824 1.02056 0.97363 1.22041 0.99050 1.00652 0.93959 1.22845 0.98539 1.00589 0.98112 0.92143 0.92278 0.93551 0.92299 0.92842 0.92231 0.92158 0.91321 0.92139 0.92712 0.94502 0.91429 0.96483 0.94682 0.91396 0.94842 0.99319 1.00035 0.92965 0.88424 0.90598 0.92774 0.90113 0.91365 0.92984 0.90650 0.93315 0.91478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 8.95 71.98 0.64 -1.90 16 2 C -0.10 -1.87 2.92 -10.79 -0.03 -1.90 16 3 C -0.14 -2.24 9.19 71.98 0.66 -1.58 16 4 C -0.10 -2.06 4.82 30.59 0.15 -1.91 16 5 C 0.05 1.38 4.57 86.30 0.39 1.78 16 6 N -0.53 -15.08 3.77 -863.98 -3.26 -18.33 16 7 C 0.07 2.65 3.22 86.30 0.28 2.93 16 8 C -0.07 -2.97 2.35 -10.79 -0.03 -2.99 16 9 H 0.05 2.13 6.43 -2.39 -0.02 2.12 16 10 C -0.11 -4.31 8.86 71.98 0.64 -3.68 16 11 C 0.04 1.91 4.45 29.84 0.13 2.04 16 12 C -0.53 -30.56 8.47 25.60 0.22 -30.34 16 13 H 0.06 3.29 7.06 -2.90 -0.02 3.26 16 14 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 15 N -0.94 -58.12 13.29 21.45 0.28 -57.83 16 16 Si 0.96 45.21 29.54 68.60 2.03 47.24 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 18 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 20 C 0.08 1.93 2.80 46.11 0.13 2.06 16 21 C -0.12 -2.72 6.41 32.01 0.21 -2.52 16 22 C -0.12 -2.19 6.82 31.67 0.22 -1.98 16 23 C -0.12 -2.42 6.80 31.32 0.21 -2.20 16 24 C -0.16 -3.80 5.40 31.32 0.17 -3.63 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.05 0.91 6.49 -2.39 -0.02 0.89 16 28 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 1.34 6.56 -2.39 -0.02 1.33 16 33 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.05 1.73 6.24 -2.38 -0.01 1.71 16 35 H 0.04 0.97 5.60 -2.39 -0.01 0.96 16 36 H 0.07 2.48 5.82 -2.39 -0.01 2.46 16 37 H 0.02 0.65 6.49 -2.38 -0.02 0.64 16 38 H 0.03 1.46 7.10 -2.39 -0.02 1.44 16 39 H 0.07 2.36 7.61 -2.39 -0.02 2.34 16 40 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 41 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 42 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 43 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 44 H 0.10 2.04 6.47 -2.39 -0.02 2.02 16 45 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.05 1.50 5.99 -2.38 -0.01 1.48 16 47 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 49 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 50 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 51 H 0.05 1.40 5.48 -2.39 -0.01 1.39 16 52 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -63.01 381.36 4.34 -58.67 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.84 Total: 15.67 kcal Atomic # 6 Polarization: -49.87 SS G_CDS: 4.45 Total: -45.42 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -2.97 Total: -76.17 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -63.01 4.34 -58.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663685196.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.044 kcal (2) G-P(sol) polarization free energy of solvation -63.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds