Wall clock time and date at job start Tue Mar 31 2020 06:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47400 * 2 1 4 4 C 1.53002 * 109.47369 * 120.00109 * 2 1 3 5 5 C 1.53008 * 109.47097 * 64.99803 * 4 2 1 6 6 N 1.46893 * 109.47178 * 174.23533 * 5 4 2 7 7 C 1.46900 * 111.00317 * 188.22263 * 6 5 4 8 8 C 1.52990 * 109.47571 * 169.99740 * 7 6 5 9 9 H 1.09001 * 109.47091 * 55.00095 * 8 7 6 10 10 C 1.53000 * 109.47305 * 295.00283 * 8 7 6 11 11 C 1.53003 * 109.47352 * 174.99714 * 8 7 6 12 12 C 1.50697 * 109.47263 * 184.99770 * 11 8 7 13 13 H 1.07999 * 119.99991 * 0.02562 * 12 11 8 14 14 C 1.37877 * 120.00137 * 179.97438 * 12 11 8 15 15 N 1.31520 * 119.99811 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00137 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46560 * 60.00644 * 16 14 12 18 18 H 1.48505 * 109.46821 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47022 * 300.00376 * 16 14 12 20 20 C 1.46898 * 111.00391 * 64.26753 * 6 5 4 21 21 C 1.55241 * 110.46586 * 33.66572 * 20 6 5 22 22 C 1.54883 * 102.59046 * 203.39483 * 21 20 6 23 23 C 1.54268 * 104.31201 * 37.93762 * 22 21 20 24 24 C 1.53872 * 106.59726 * 336.32224 * 23 22 21 25 25 H 1.08995 * 109.47166 * 60.00216 * 1 2 3 26 26 H 1.09003 * 109.47140 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.46889 * 299.99967 * 1 2 3 28 28 H 1.09004 * 109.47153 * 239.99621 * 2 1 3 29 29 H 1.09002 * 109.47466 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46868 * 299.99774 * 3 2 1 31 31 H 1.08996 * 109.46920 * 59.99652 * 3 2 1 32 32 H 1.09000 * 109.46724 * 305.00313 * 4 2 1 33 33 H 1.08995 * 109.47506 * 184.99706 * 4 2 1 34 34 H 1.09003 * 109.46648 * 54.23342 * 5 4 2 35 35 H 1.09005 * 109.46867 * 294.23492 * 5 4 2 36 36 H 1.09003 * 109.46997 * 290.00070 * 7 6 5 37 37 H 1.09003 * 109.46689 * 49.99397 * 7 6 5 38 38 H 1.09002 * 109.46811 * 180.02562 * 10 8 7 39 39 H 1.09001 * 109.46893 * 299.99934 * 10 8 7 40 40 H 1.08999 * 109.47284 * 59.99525 * 10 8 7 41 41 H 1.08994 * 109.47305 * 305.00476 * 11 8 7 42 42 H 1.08999 * 109.46618 * 65.00490 * 11 8 7 43 43 H 0.96999 * 119.99495 * 179.97438 * 15 14 12 44 44 H 1.08992 * 110.43993 * 156.32431 * 20 6 5 45 45 H 1.09000 * 110.89202 * 85.10653 * 21 20 6 46 46 H 1.08993 * 110.76836 * 321.63146 * 21 20 6 47 47 H 1.09002 * 110.48958 * 279.19192 * 22 21 20 48 48 H 1.09004 * 110.48655 * 156.67965 * 22 21 20 49 49 H 1.08999 * 110.03189 * 95.60507 * 23 22 21 50 50 H 1.09005 * 110.03290 * 216.99031 * 23 22 21 51 51 H 1.09001 * 110.03459 * 119.28456 * 24 23 22 52 52 H 1.09002 * 110.03394 * 240.67059 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 -2.1956 1.1880 6 7 2.2407 -2.9168 2.3153 7 6 2.0370 -4.3657 2.1838 8 6 2.8839 -5.0967 3.2274 9 1 2.6482 -4.7130 4.2200 10 6 4.3674 -4.8680 2.9313 11 6 2.5781 -6.5949 3.1739 12 6 3.3189 -7.2986 4.2815 13 1 3.9449 -6.7338 4.9564 14 6 3.1967 -8.6635 4.4340 15 7 2.4340 -9.3513 3.6124 16 14 4.1144 -9.5358 5.8075 17 1 3.6809 -8.9882 7.1180 18 1 3.8176 -10.9900 5.7554 19 1 5.5745 -9.3227 5.6404 20 6 1.7168 -2.4258 3.5969 21 6 0.2315 -1.9993 3.4484 22 6 0.0498 -0.9972 4.6154 23 6 1.3831 -0.2227 4.6641 24 6 2.4429 -1.1310 4.0165 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6054 -0.2618 2.1369 33 1 3.1263 -0.6444 1.2951 34 1 1.9831 -2.6291 0.2503 35 1 0.5498 -2.2770 1.2454 36 1 0.9842 -4.6003 2.3412 37 1 2.3351 -4.6853 1.1852 38 1 4.9708 -5.3892 3.6745 39 1 4.6031 -5.2517 1.9386 40 1 4.5853 -3.8007 2.9694 41 1 1.5065 -6.7516 3.2966 42 1 2.8962 -6.9964 2.2118 43 1 2.3483 -10.3115 3.7195 44 1 1.8212 -3.1888 4.3682 45 1 -0.4325 -2.8554 3.5675 46 1 0.0640 -1.5096 2.4892 47 1 -0.1170 -1.5288 5.5523 48 1 -0.7783 -0.3187 4.4102 49 1 1.2952 0.7075 4.1028 50 1 1.6539 -0.0103 5.6984 51 1 2.8695 -0.6416 3.1409 52 1 3.2290 -1.3595 4.7362 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663685197.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:55 Heat of formation + Delta-G solvation = -28.414464 kcal Electronic energy + Delta-G solvation = -23906.883712 eV Core-core repulsion = 20905.076459 eV Total energy + Delta-G solvation = -3001.807253 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.87774 -36.37481 -35.97438 -33.72679 -31.94088 -29.16578 -28.75046 -27.55031 -27.27559 -26.61549 -24.82406 -22.90036 -22.11401 -20.37174 -20.09532 -19.69122 -18.27683 -16.48142 -16.04444 -15.76356 -15.22720 -14.77000 -14.38865 -14.17507 -14.06998 -13.73334 -13.22623 -13.15745 -12.87953 -12.51755 -12.39471 -12.27692 -12.01279 -11.76553 -11.50346 -11.33132 -11.27050 -11.12222 -11.00370 -10.94359 -10.83403 -10.81133 -10.68949 -10.59955 -10.45722 -10.30173 -10.24477 -10.17948 -9.93766 -9.44506 -9.06334 -8.90249 -8.29012 -7.81963 -5.94300 -3.95151 3.36482 3.40628 3.43318 4.13180 4.51024 4.71682 4.74484 4.78374 4.84147 4.85453 5.06011 5.25910 5.41065 5.43171 5.44522 5.50586 5.53863 5.59451 5.61637 5.65768 5.70054 5.70786 5.74585 5.80421 5.83285 5.92880 5.95284 5.99153 6.01927 6.06334 6.11079 6.16583 6.23233 6.28952 6.33209 6.36506 6.46232 6.48118 6.49259 6.66512 6.77898 7.08727 7.22922 7.28225 7.52646 7.58260 7.73978 7.90518 8.06446 8.50851 9.11151 9.67949 11.17249 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.023575 B = 0.003759 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.397244 B = 7447.884183 C = 7882.343370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.099 4.099 3 C -0.145 4.145 4 C -0.121 4.121 5 C 0.048 3.952 6 N -0.527 5.527 7 C 0.061 3.939 8 C -0.080 4.080 9 H 0.055 0.945 10 C -0.121 4.121 11 C 0.028 3.972 12 C -0.511 4.511 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.889 3.111 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.079 3.921 21 C -0.168 4.168 22 C -0.120 4.120 23 C -0.123 4.123 24 C -0.129 4.129 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.042 0.958 36 H 0.027 0.973 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.038 0.962 40 H 0.042 0.958 41 H 0.011 0.989 42 H 0.015 0.985 43 H 0.259 0.741 44 H 0.090 0.910 45 H 0.062 0.938 46 H 0.083 0.917 47 H 0.063 0.937 48 H 0.058 0.942 49 H 0.058 0.942 50 H 0.059 0.941 51 H 0.085 0.915 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.838 21.226 -4.557 22.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 C -0.203 4.203 4 C -0.158 4.158 5 C -0.080 4.080 6 N -0.249 5.249 7 C -0.066 4.066 8 C -0.099 4.099 9 H 0.074 0.926 10 C -0.179 4.179 11 C -0.010 4.010 12 C -0.550 4.550 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.030 4.030 21 C -0.206 4.206 22 C -0.158 4.158 23 C -0.161 4.161 24 C -0.167 4.167 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.045 0.955 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.029 0.971 42 H 0.033 0.967 43 H 0.069 0.931 44 H 0.108 0.892 45 H 0.080 0.920 46 H 0.102 0.898 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.076 0.924 50 H 0.078 0.922 51 H 0.104 0.896 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.373 21.114 -4.616 21.874 hybrid contribution -0.470 -0.877 0.760 1.252 sum -3.844 20.237 -3.856 20.956 Atomic orbital electron populations 1.21894 0.95606 1.01783 1.01336 1.21149 0.95635 0.96088 0.98889 1.21818 1.00951 0.96121 1.01373 1.22069 1.01451 0.94757 0.97566 1.22278 0.97327 0.94036 0.94363 1.62169 1.57085 1.04551 1.01069 1.22286 0.98062 0.85611 1.00672 1.21233 0.94602 0.97832 0.96220 0.92645 1.21566 0.96429 0.99334 1.00537 1.19116 0.96456 0.88295 0.97119 1.21203 1.27692 0.92238 1.13838 0.92669 1.25016 0.95551 0.97743 0.96218 1.69960 1.39039 1.07217 1.37536 0.86705 0.80378 0.78488 0.82711 1.20335 1.21401 1.20269 1.22697 0.90951 0.96823 0.92553 1.23405 0.98497 0.99306 0.99424 1.22244 0.97067 0.97777 0.98742 1.22120 0.95262 0.98318 1.00439 1.22539 0.97634 0.95417 1.01130 0.93109 0.92521 0.92863 0.91409 0.92727 0.93055 0.92875 0.90426 0.91143 0.91511 0.94051 0.95487 0.91524 0.92950 0.94331 0.93885 0.97056 0.96664 0.93093 0.89177 0.91964 0.89841 0.91804 0.92327 0.92359 0.92193 0.89622 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.95 37.16 0.33 -0.94 16 2 C -0.10 -0.88 2.92 -90.62 -0.26 -1.15 16 3 C -0.15 -1.16 9.19 37.16 0.34 -0.81 16 4 C -0.12 -1.26 2.79 -26.73 -0.07 -1.33 16 5 C 0.05 0.59 4.04 -3.82 -0.02 0.57 16 6 N -0.53 -7.74 3.96 -224.44 -0.89 -8.62 16 7 C 0.06 1.07 4.33 -3.83 -0.02 1.06 16 8 C -0.08 -1.66 2.28 -90.62 -0.21 -1.87 16 9 H 0.06 1.18 6.13 -51.93 -0.32 0.86 16 10 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 11 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 12 C -0.51 -14.48 8.41 -34.44 -0.29 -14.77 16 13 H 0.06 1.53 7.06 -52.49 -0.37 1.15 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -27.26 13.29 55.43 0.74 -26.53 16 16 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 20 C 0.08 1.09 2.69 -65.86 -0.18 0.91 16 21 C -0.17 -2.06 5.41 -24.55 -0.13 -2.19 16 22 C -0.12 -1.29 6.82 -25.07 -0.17 -1.46 16 23 C -0.12 -1.27 6.27 -25.61 -0.16 -1.43 16 24 C -0.13 -1.56 5.65 -25.61 -0.14 -1.70 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.51 6.70 -51.93 -0.35 0.17 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.80 4.03 -51.93 -0.21 0.59 16 33 H 0.07 0.79 7.50 -51.93 -0.39 0.40 16 34 H 0.07 0.85 7.97 -51.93 -0.41 0.43 16 35 H 0.04 0.51 4.43 -51.93 -0.23 0.28 16 36 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 37 H 0.07 1.18 7.96 -51.93 -0.41 0.77 16 38 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.04 0.77 7.75 -51.93 -0.40 0.37 16 41 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.09 1.47 5.85 -51.93 -0.30 1.16 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.08 0.96 4.43 -51.93 -0.23 0.73 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.06 0.54 7.82 -51.93 -0.41 0.13 16 50 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 51 H 0.09 1.00 4.46 -51.93 -0.23 0.77 16 52 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 376.07 15.07 5.67 5.67 Total: -1.00 -28.99 376.07 -10.48 -39.47 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -10.10 Total: -1.82 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: -0.87 Total: -25.08 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: -0.15 Total: -35.15 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.99 -10.48 -39.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663685197.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.057 kcal (2) G-P(sol) polarization free energy of solvation -28.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds