Wall clock time and date at job start Tue Mar 31 2020 06:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47140 * 2 1 4 4 C 1.52992 * 109.47418 * 120.00213 * 2 1 3 5 5 C 1.53004 * 109.47373 * 64.87249 * 4 2 1 6 6 H 1.09003 * 109.68630 * 319.10686 * 5 4 2 7 7 C 1.53984 * 109.69734 * 198.56013 * 5 4 2 8 8 C 1.45872 * 112.66333 * 158.89920 * 7 5 4 9 9 C 1.54517 * 111.67537 * 61.49385 * 8 7 5 10 10 C 1.50533 * 108.86288 * 282.75509 * 9 8 7 11 11 C 1.53915 * 112.94066 * 91.75153 * 10 9 8 12 12 N 1.44300 * 109.69275 * 79.68876 * 5 4 2 13 13 C 1.46895 * 111.00123 * 341.06171 * 12 5 4 14 14 C 1.53008 * 109.46725 * 161.54777 * 13 12 5 15 15 H 1.08998 * 109.47152 * 54.99948 * 14 13 12 16 16 C 1.52998 * 109.47310 * 294.99709 * 14 13 12 17 17 C 1.53002 * 109.46733 * 175.00056 * 14 13 12 18 18 C 1.50703 * 109.46854 * 185.00276 * 17 14 13 19 19 H 1.07999 * 119.99912 * 359.97438 * 18 17 14 20 20 C 1.37880 * 120.00013 * 180.02562 * 18 17 14 21 21 N 1.31513 * 119.99932 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00063 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47676 * 59.99096 * 22 20 18 24 24 H 1.48503 * 109.46979 * 179.97438 * 22 20 18 25 25 H 1.48512 * 109.46710 * 299.98910 * 22 20 18 26 26 H 1.08995 * 109.47383 * 59.99507 * 1 2 3 27 27 H 1.08994 * 109.46989 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46870 * 299.99619 * 1 2 3 29 29 H 1.09005 * 109.47295 * 240.00326 * 2 1 3 30 30 H 1.08998 * 109.47303 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47385 * 300.00492 * 3 2 1 32 32 H 1.08999 * 109.46928 * 60.00416 * 3 2 1 33 33 H 1.09010 * 109.47562 * 184.86971 * 4 2 1 34 34 H 1.09000 * 109.47278 * 304.86811 * 4 2 1 35 35 H 1.09002 * 108.83780 * 279.71978 * 7 5 4 36 36 H 1.08997 * 108.84571 * 38.07357 * 7 5 4 37 37 H 1.08997 * 109.04247 * 182.06261 * 8 7 5 38 38 H 1.09007 * 109.03572 * 300.93066 * 8 7 5 39 39 H 1.09005 * 109.57102 * 42.56575 * 9 8 7 40 40 H 1.08998 * 109.57145 * 162.93805 * 9 8 7 41 41 H 1.09000 * 108.79000 * 212.64571 * 10 9 8 42 42 H 1.09004 * 108.79071 * 330.97596 * 10 9 8 43 43 H 1.09008 * 108.71256 * 78.75218 * 11 10 9 44 44 H 1.09006 * 108.71539 * 196.88979 * 11 10 9 45 45 H 1.08996 * 109.47164 * 281.54389 * 13 12 5 46 46 H 1.08994 * 109.47156 * 41.54951 * 13 12 5 47 47 H 1.08995 * 109.46977 * 59.99870 * 16 14 13 48 48 H 1.08995 * 109.47455 * 180.02562 * 16 14 13 49 49 H 1.08998 * 109.46921 * 300.00672 * 16 14 13 50 50 H 1.09003 * 109.47108 * 304.99817 * 17 14 13 51 51 H 1.08994 * 109.47411 * 64.99951 * 17 14 13 52 52 H 0.96998 * 120.00414 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 1.6325 -2.1948 1.1894 6 1 0.6139 -2.2791 0.8108 7 6 1.7158 -2.8138 2.5969 8 6 0.9055 -4.0195 2.7295 9 6 1.3724 -5.1302 1.7622 10 6 0.8739 -4.8113 0.3780 11 6 1.8821 -3.9939 -0.4492 12 7 2.5351 -2.9142 0.3232 13 6 3.2576 -1.9940 -0.5651 14 6 4.4981 -2.6938 -1.1241 15 1 4.2029 -3.6242 -1.6091 16 6 5.4692 -2.9997 0.0179 17 6 5.1820 -1.7814 -2.1444 18 6 6.3314 -2.5163 -2.7845 19 1 6.5523 -3.5324 -2.4926 20 6 7.1016 -1.8913 -3.7422 21 7 6.8329 -0.6538 -4.0973 22 14 8.5259 -2.8025 -4.5362 23 1 8.0159 -4.0167 -5.2223 24 1 9.1897 -1.9169 -5.5263 25 1 9.5042 -3.1984 -3.4914 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1266 -0.6463 1.2938 34 1 1.6072 -0.2603 2.1370 35 1 2.7552 -3.0628 2.8109 36 1 1.3749 -2.0785 3.3256 37 1 0.9783 -4.3860 3.7535 38 1 -0.1345 -3.7743 2.5141 39 1 2.4615 -5.1755 1.7566 40 1 0.9670 -6.0893 2.0844 41 1 0.6666 -5.7453 -0.1443 42 1 -0.0525 -4.2429 0.4608 43 1 2.6512 -4.6672 -0.8279 44 1 1.3601 -3.5488 -1.2963 45 1 2.6067 -1.6968 -1.3873 46 1 3.5608 -1.1103 -0.0039 47 1 4.9821 -3.6496 0.7447 48 1 6.3532 -3.4978 -0.3803 49 1 5.7643 -2.0693 0.5029 50 1 4.4638 -1.4915 -2.9114 51 1 5.5559 -0.8897 -1.6412 52 1 7.3745 -0.2142 -4.7713 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663836241.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:06 Heat of formation + Delta-G solvation = -17.766053 kcal Electronic energy + Delta-G solvation = -24486.599802 eV Core-core repulsion = 21485.254298 eV Total energy + Delta-G solvation = -3001.345503 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.08646 -36.40285 -35.52016 -33.36383 -32.32539 -31.75621 -27.81798 -27.28475 -26.89201 -26.43386 -24.65231 -23.33543 -22.23620 -20.55430 -19.94621 -19.31582 -18.46983 -16.38584 -16.16348 -15.52463 -14.74518 -14.63263 -14.40271 -14.31353 -13.79945 -13.61175 -13.54338 -13.06928 -12.78967 -12.50519 -12.29040 -12.15649 -12.05684 -12.01237 -11.67654 -11.35350 -11.31618 -11.08750 -10.87609 -10.80963 -10.80209 -10.69136 -10.52924 -10.36781 -10.32626 -10.26071 -10.13983 -9.98903 -9.77662 -9.38851 -9.02264 -8.86941 -8.27798 -7.64551 -5.93080 -3.93636 3.36984 3.41205 3.43918 4.20120 4.52045 4.70152 4.77819 4.92536 5.04815 5.06050 5.09233 5.31905 5.38124 5.42659 5.44011 5.53504 5.60535 5.68261 5.71860 5.76117 5.83501 5.89622 5.92459 5.96681 5.99807 6.06883 6.07809 6.10957 6.16427 6.21567 6.24808 6.30790 6.31218 6.39275 6.44270 6.48305 6.51778 6.55583 6.60487 6.69200 6.84071 7.13594 7.24869 7.30263 7.60805 7.73201 7.75749 7.93633 8.07952 8.53010 9.12666 9.69362 11.18356 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.017053 B = 0.004883 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.534337 B = 5733.338079 C = 6785.664309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C -0.145 4.145 4 C -0.123 4.123 5 C 0.093 3.907 6 H 0.049 0.951 7 C -0.111 4.111 8 C -0.111 4.111 9 C -0.111 4.111 10 C -0.117 4.117 11 C 0.063 3.937 12 N -0.536 5.536 13 C 0.046 3.954 14 C -0.081 4.081 15 H 0.051 0.949 16 C -0.120 4.120 17 C 0.029 3.971 18 C -0.510 4.510 19 H 0.054 0.946 20 C 0.056 3.944 21 N -0.897 5.897 22 Si 0.888 3.112 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.076 0.924 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.027 0.973 45 H 0.033 0.967 46 H 0.089 0.911 47 H 0.042 0.958 48 H 0.050 0.950 49 H 0.036 0.964 50 H 0.010 0.990 51 H 0.014 0.986 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.158 -2.628 12.520 19.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.142 4.142 3 C -0.202 4.202 4 C -0.161 4.161 5 C -0.016 4.016 6 H 0.067 0.933 7 C -0.149 4.149 8 C -0.149 4.149 9 C -0.149 4.149 10 C -0.155 4.155 11 C -0.064 4.064 12 N -0.261 5.261 13 C -0.080 4.080 14 C -0.100 4.100 15 H 0.070 0.930 16 C -0.178 4.178 17 C -0.009 4.009 18 C -0.549 4.549 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.537 5.537 22 Si 0.716 3.284 23 H -0.204 1.204 24 H -0.214 1.214 25 H -0.203 1.203 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.092 0.908 44 H 0.046 0.954 45 H 0.051 0.949 46 H 0.107 0.893 47 H 0.061 0.939 48 H 0.069 0.931 49 H 0.055 0.945 50 H 0.028 0.972 51 H 0.033 0.967 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.793 -2.694 12.698 18.941 hybrid contribution 0.188 -0.023 -1.111 1.127 sum -13.605 -2.718 11.587 18.076 Atomic orbital electron populations 1.21870 0.95930 1.01215 1.01190 1.21763 0.95516 0.96908 1.00015 1.21792 1.01533 0.95780 1.01091 1.22107 1.02165 0.94241 0.97543 1.21361 0.95076 0.91824 0.93359 0.93300 1.20547 1.01452 0.96662 0.96228 1.20532 0.99227 0.96103 0.99003 1.21288 1.02318 0.97096 0.94173 1.21377 0.98222 0.99412 0.96515 1.22378 0.96203 0.93764 0.94065 1.60789 1.28981 1.13401 1.22903 1.22985 0.95228 0.95811 0.93936 1.21224 0.93298 0.99080 0.96412 0.93017 1.21551 0.98823 1.00022 0.97362 1.19104 0.94758 0.94378 0.92659 1.21210 1.13393 0.99452 1.20822 0.92738 1.25004 0.97626 0.94889 0.96958 1.69953 1.39977 1.11787 1.32011 0.86727 0.82844 0.79645 0.79182 1.20376 1.21418 1.20302 0.93067 0.92945 0.93174 0.88805 0.92248 0.92883 0.93318 0.89980 0.92109 0.91117 0.92933 0.92798 0.93124 0.90556 0.92905 0.92012 0.92902 0.90750 0.95447 0.94881 0.89326 0.93934 0.93078 0.94499 0.97153 0.96744 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.99 37.15 0.33 -1.28 16 2 C -0.12 -1.57 2.26 -90.62 -0.20 -1.77 16 3 C -0.14 -1.79 9.19 37.16 0.34 -1.45 16 4 C -0.12 -1.52 3.73 -26.73 -0.10 -1.62 16 5 C 0.09 1.15 1.99 -68.59 -0.14 1.01 16 6 H 0.05 0.61 4.60 -51.93 -0.24 0.38 16 7 C -0.11 -1.25 4.82 -29.59 -0.14 -1.39 16 8 C -0.11 -1.14 5.34 -29.31 -0.16 -1.30 16 9 C -0.11 -1.20 5.63 -27.17 -0.15 -1.36 16 10 C -0.12 -1.32 5.28 -27.49 -0.15 -1.47 16 11 C 0.06 0.87 5.03 -2.77 -0.01 0.86 16 12 N -0.54 -7.69 3.41 -226.53 -0.77 -8.46 16 13 C 0.05 0.79 2.67 -3.82 -0.01 0.78 16 14 C -0.08 -1.66 2.34 -90.62 -0.21 -1.87 16 15 H 0.05 1.09 6.77 -51.93 -0.35 0.74 16 16 C -0.12 -2.35 8.89 37.16 0.33 -2.02 16 17 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 18 C -0.51 -14.37 8.41 -34.44 -0.29 -14.66 16 19 H 0.05 1.50 7.06 -52.49 -0.37 1.13 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 22 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.58 6.25 -51.93 -0.32 0.26 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.09 1.40 4.32 -51.93 -0.22 1.17 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 1.14 6.02 -51.92 -0.31 0.83 16 34 H 0.06 0.68 7.70 -51.93 -0.40 0.28 16 35 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 36 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.05 0.50 7.59 -51.93 -0.39 0.11 16 39 H 0.08 0.95 7.79 -51.93 -0.40 0.55 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.58 6.65 -51.93 -0.35 0.23 16 43 H 0.07 1.12 7.03 -51.92 -0.37 0.75 16 44 H 0.03 0.40 7.83 -51.93 -0.41 -0.01 16 45 H 0.03 0.59 5.78 -51.93 -0.30 0.29 16 46 H 0.09 1.50 4.31 -51.93 -0.22 1.28 16 47 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 48 H 0.05 1.08 6.95 -51.93 -0.36 0.71 16 49 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 51 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 52 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 370.03 15.07 5.58 5.58 Total: -1.00 -28.63 370.03 -10.29 -38.92 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -10.03 Total: -1.13 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: -0.78 Total: -25.42 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: -0.04 Total: -34.80 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.63 -10.29 -38.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663836241.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.156 kcal (2) G-P(sol) polarization free energy of solvation -28.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds