Wall clock time and date at job start Tue Mar 31 2020 06:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47178 * 2 1 4 4 C 1.53001 * 109.47247 * 120.00179 * 2 1 3 5 5 C 1.52995 * 109.46978 * 174.22239 * 4 2 1 6 6 H 1.09000 * 108.76130 * 188.01529 * 5 4 2 7 7 C 1.45852 * 108.79813 * 306.27023 * 5 4 2 8 8 C 1.54507 * 111.59499 * 182.21613 * 7 5 4 9 9 C 1.50467 * 108.84998 * 282.80887 * 8 7 5 10 10 C 1.54287 * 113.03883 * 92.15096 * 9 8 7 11 11 C 1.54074 * 112.28614 * 318.30394 * 10 9 8 12 12 N 1.44262 * 111.98077 * 318.91240 * 11 10 9 13 13 C 1.46900 * 110.99898 * 219.31023 * 12 11 10 14 14 C 1.52996 * 109.47346 * 318.07042 * 13 12 11 15 15 H 1.09004 * 109.46855 * 52.73031 * 14 13 12 16 16 C 1.52999 * 109.47429 * 292.73210 * 14 13 12 17 17 C 1.53000 * 109.47367 * 172.72864 * 14 13 12 18 18 C 1.50706 * 109.46978 * 185.00111 * 17 14 13 19 19 H 1.07996 * 120.00341 * 0.02562 * 18 17 14 20 20 C 1.37872 * 119.99593 * 180.27450 * 18 17 14 21 21 N 1.31516 * 120.00460 * 359.72121 * 20 18 17 22 22 Si 1.86803 * 119.99941 * 179.72945 * 20 18 17 23 23 H 1.48498 * 109.47019 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47445 * 120.00051 * 22 20 18 25 25 H 1.48503 * 109.46758 * 240.00084 * 22 20 18 26 26 H 1.08999 * 109.47369 * 300.00051 * 1 2 3 27 27 H 1.09002 * 109.47200 * 59.99840 * 1 2 3 28 28 H 1.09003 * 109.46898 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46713 * 240.00199 * 2 1 3 30 30 H 1.09002 * 109.47016 * 296.67394 * 3 2 1 31 31 H 1.09001 * 109.46993 * 56.66664 * 3 2 1 32 32 H 1.09000 * 109.47175 * 176.66853 * 3 2 1 33 33 H 1.09003 * 109.47117 * 54.22555 * 4 2 1 34 34 H 1.09000 * 109.46902 * 294.22743 * 4 2 1 35 35 H 1.09004 * 109.05598 * 302.75604 * 7 5 4 36 36 H 1.08996 * 109.05795 * 61.74232 * 7 5 4 37 37 H 1.08997 * 109.57310 * 42.61195 * 8 7 5 38 38 H 1.09000 * 109.58121 * 162.87163 * 8 7 5 39 39 H 1.09005 * 108.77073 * 213.06772 * 9 8 7 40 40 H 1.09004 * 108.76907 * 331.34611 * 9 8 7 41 41 H 1.09010 * 108.91553 * 79.02245 * 10 9 8 42 42 H 1.08998 * 108.92235 * 197.66801 * 10 9 8 43 43 H 1.09000 * 108.97831 * 198.26789 * 11 10 9 44 44 H 1.08998 * 108.97745 * 79.55750 * 11 10 9 45 45 H 1.09003 * 109.47143 * 198.06928 * 13 12 11 46 46 H 1.09001 * 109.47094 * 78.07326 * 13 12 11 47 47 H 1.09001 * 109.47244 * 71.15555 * 16 14 13 48 48 H 1.08998 * 109.47247 * 191.15336 * 16 14 13 49 49 H 1.09002 * 109.46905 * 311.15744 * 16 14 13 50 50 H 1.08993 * 109.46774 * 65.00255 * 17 14 13 51 51 H 1.08996 * 109.46851 * 305.00004 * 17 14 13 52 52 H 0.96991 * 120.00218 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5631 -0.8482 1.1787 6 1 3.9001 -1.4848 1.9968 7 6 3.9240 -1.4806 -0.0851 8 6 5.4503 -1.6910 -0.2003 9 6 6.0980 -0.3763 -0.5409 10 6 6.5495 0.4149 0.7043 11 6 5.5088 0.3622 1.8392 12 7 4.1608 0.4937 1.3422 13 6 3.3480 1.3263 2.2389 14 6 3.6529 0.9586 3.6923 15 1 4.7288 1.0056 3.8610 16 6 3.1540 -0.4599 3.9750 17 6 2.9467 1.9432 4.6265 18 6 3.3446 1.6570 6.0516 19 1 4.0327 0.8536 6.2693 20 6 2.8262 2.4177 7.0780 21 7 1.9887 3.3965 6.8130 22 14 3.3135 2.0582 8.8452 23 1 4.2609 0.9151 8.8746 24 1 3.9645 3.2566 9.4327 25 1 2.1019 1.7168 9.6330 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.7262 1.9388 -0.9183 31 1 1.6287 1.9732 0.8586 32 1 3.1284 1.4430 0.0597 33 1 1.5947 -1.7148 1.3024 34 1 1.7636 -0.1513 2.1362 35 1 3.4252 -2.4473 -0.1545 36 1 3.5899 -0.8482 -0.9077 37 1 5.8413 -2.0554 0.7496 38 1 5.6607 -2.4179 -0.9848 39 1 6.9676 -0.5663 -1.1701 40 1 5.3865 0.2305 -1.1010 41 1 7.4890 -0.0026 1.0668 42 1 6.7110 1.4554 0.4227 43 1 5.7084 1.1719 2.5411 44 1 5.6025 -0.5895 2.3622 45 1 2.2910 1.1553 2.0348 46 1 3.5847 2.3773 2.0727 47 1 3.7899 -1.1785 3.4579 48 1 3.1885 -0.6503 5.0477 49 1 2.1282 -0.5616 3.6207 50 1 1.8674 1.8331 4.5215 51 1 3.2351 2.9615 4.3662 52 1 1.6237 3.9313 7.5352 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663836243.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:12 Heat of formation + Delta-G solvation = 13.588308 kcal Electronic energy + Delta-G solvation = -25038.215249 eV Core-core repulsion = 22038.229372 eV Total energy + Delta-G solvation = -2999.985876 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.79104 -36.08411 -35.75017 -33.24519 -32.20800 -31.49750 -28.43617 -27.36702 -26.91621 -25.91691 -24.73291 -23.14579 -22.44028 -21.12347 -19.98427 -19.05834 -17.71303 -16.63010 -16.16115 -15.58102 -15.25583 -14.49931 -14.45990 -14.43914 -13.80076 -13.51132 -13.17240 -12.92754 -12.77029 -12.50734 -12.25884 -12.06373 -12.00484 -11.86186 -11.71074 -11.40080 -11.16853 -11.01143 -10.81843 -10.76409 -10.57697 -10.55004 -10.48112 -10.41221 -10.32129 -10.16849 -10.08527 -9.95739 -9.66505 -9.29966 -9.18674 -8.84816 -8.33431 -7.62110 -5.98002 -3.99332 3.30522 3.38446 3.41928 4.24347 4.47041 4.78429 4.92999 5.03814 5.13649 5.23118 5.23880 5.37330 5.40777 5.47957 5.51104 5.53810 5.64131 5.77930 5.81506 5.87784 5.90090 5.91640 5.93212 6.02045 6.07817 6.11416 6.17508 6.19248 6.21137 6.27796 6.31499 6.34565 6.37500 6.42983 6.48486 6.50087 6.53069 6.56021 6.69196 6.74176 6.93848 7.01742 7.10664 7.18426 7.54629 7.65750 7.71235 7.85743 8.01972 8.46234 9.07266 9.64226 11.13083 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.018474 B = 0.005074 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.286471 B = 5516.660983 C = 6342.634836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 C -0.178 4.178 4 C -0.142 4.142 5 C 0.078 3.922 6 H 0.054 0.946 7 C -0.112 4.112 8 C -0.115 4.115 9 C -0.107 4.107 10 C -0.109 4.109 11 C 0.047 3.953 12 N -0.510 5.510 13 C 0.028 3.972 14 C -0.123 4.123 15 H 0.060 0.940 16 C -0.149 4.149 17 C 0.031 3.969 18 C -0.512 4.512 19 H 0.054 0.946 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.887 3.113 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.032 0.968 31 H 0.055 0.945 32 H 0.111 0.889 33 H 0.057 0.943 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.044 0.956 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.038 0.962 45 H 0.102 0.898 46 H 0.068 0.932 47 H 0.038 0.962 48 H 0.061 0.939 49 H 0.049 0.951 50 H 0.014 0.986 51 H 0.014 0.986 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.344 -8.804 -15.826 18.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 C -0.235 4.235 4 C -0.179 4.179 5 C -0.029 4.029 6 H 0.071 0.929 7 C -0.150 4.150 8 C -0.153 4.153 9 C -0.144 4.144 10 C -0.147 4.147 11 C -0.082 4.082 12 N -0.233 5.233 13 C -0.099 4.099 14 C -0.142 4.142 15 H 0.079 0.921 16 C -0.205 4.205 17 C -0.007 4.007 18 C -0.551 4.551 19 H 0.072 0.928 20 C -0.144 4.144 21 N -0.535 5.535 22 Si 0.715 3.285 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.129 0.871 33 H 0.075 0.925 34 H 0.113 0.887 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.056 0.944 45 H 0.120 0.880 46 H 0.087 0.913 47 H 0.057 0.943 48 H 0.080 0.920 49 H 0.068 0.932 50 H 0.032 0.968 51 H 0.032 0.968 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.258 -8.435 -16.217 18.567 hybrid contribution 0.131 -0.511 1.940 2.010 sum 3.388 -8.946 -14.277 17.185 Atomic orbital electron populations 1.21898 0.96332 1.00947 1.01551 1.21095 0.94424 0.97374 0.97899 1.22765 1.06004 0.94712 1.00006 1.22437 0.94846 1.00690 0.99914 1.20728 0.94167 0.90599 0.97450 0.92855 1.20761 0.95495 0.99770 0.98967 1.21328 0.95729 0.97223 1.01023 1.21168 0.99563 0.96123 0.97579 1.21955 0.97263 0.99943 0.95543 1.22012 0.89455 1.01049 0.95704 1.61996 1.01739 1.12209 1.47335 1.23257 0.99693 0.96603 0.90298 1.21945 1.00610 0.96510 0.95183 0.92132 1.22233 0.99661 0.96441 1.02195 1.19054 0.95313 0.93331 0.92972 1.21275 1.26396 1.15657 0.91746 0.92779 1.25007 0.95260 0.95254 0.98924 1.69968 1.31437 1.20138 1.31977 0.86620 0.78305 0.78148 0.85432 1.19860 1.21082 1.21107 0.92693 0.93231 0.93405 0.91517 0.94928 0.92581 0.87103 0.92457 0.88660 0.92498 0.90855 0.92417 0.92743 0.93699 0.91623 0.92925 0.92333 0.90824 0.94413 0.88049 0.91329 0.94347 0.92016 0.93198 0.96787 0.96778 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.19 37.16 0.34 -1.37 16 2 C -0.09 -1.07 2.50 -90.62 -0.23 -1.30 16 3 C -0.18 -2.31 7.45 37.16 0.28 -2.04 16 4 C -0.14 -1.82 3.62 -26.73 -0.10 -1.92 16 5 C 0.08 0.99 1.04 -70.60 -0.07 0.92 16 6 H 0.05 0.75 4.50 -51.93 -0.23 0.52 16 7 C -0.11 -1.24 4.22 -29.32 -0.12 -1.37 16 8 C -0.12 -1.22 5.60 -27.20 -0.15 -1.37 16 9 C -0.11 -1.15 5.42 -27.32 -0.15 -1.30 16 10 C -0.11 -1.29 6.15 -25.50 -0.16 -1.44 16 11 C 0.05 0.65 3.79 -4.67 -0.02 0.63 16 12 N -0.51 -7.00 2.25 -231.47 -0.52 -7.52 16 13 C 0.03 0.45 2.61 -3.83 -0.01 0.44 16 14 C -0.12 -2.39 1.89 -90.62 -0.17 -2.57 16 15 H 0.06 1.22 5.68 -51.93 -0.29 0.93 16 16 C -0.15 -2.72 7.72 37.16 0.29 -2.43 16 17 C 0.03 0.77 4.45 -27.88 -0.12 0.65 16 18 C -0.51 -14.20 8.25 -34.44 -0.28 -14.49 16 19 H 0.05 1.48 7.13 -52.49 -0.37 1.10 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 21 N -0.90 -26.81 13.29 55.43 0.74 -26.08 16 22 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.76 6.01 -51.93 -0.31 0.45 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.80 6.21 -51.93 -0.32 0.48 16 32 H 0.11 1.52 4.73 -51.93 -0.25 1.28 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.10 1.43 3.04 -51.93 -0.16 1.27 16 35 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 36 H 0.07 0.83 5.52 -51.93 -0.29 0.54 16 37 H 0.06 0.65 7.15 -51.93 -0.37 0.28 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.76 7.38 -51.93 -0.38 0.38 16 41 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 1.15 5.92 -51.93 -0.31 0.84 16 44 H 0.04 0.54 6.01 -51.93 -0.31 0.23 16 45 H 0.10 1.64 2.48 -51.93 -0.13 1.52 16 46 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 47 H 0.04 0.62 4.50 -51.93 -0.23 0.39 16 48 H 0.06 1.27 6.71 -51.93 -0.35 0.92 16 49 H 0.05 0.87 5.52 -51.93 -0.29 0.59 16 50 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 52 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 348.36 15.07 5.25 5.25 Total: -1.00 -28.00 348.36 -9.56 -37.56 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -9.23 Total: 1.56 kcal Atomic # 6 Polarization: -26.67 SS G_CDS: -0.78 Total: -27.45 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.22 Total: -33.59 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.00 -9.56 -37.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663836243.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.152 kcal (2) G-P(sol) polarization free energy of solvation -28.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds