Wall clock time and date at job start Tue Mar 31 2020 06:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47272 * 2 1 4 4 C 1.53005 * 109.46632 * 119.99720 * 2 1 3 5 5 C 1.53003 * 109.47122 * 65.62135 * 4 2 1 6 6 H 1.08997 * 109.78209 * 303.97972 * 5 4 2 7 7 C 1.50815 * 109.74593 * 64.68080 * 5 4 2 8 8 C 1.53815 * 111.62481 * 214.69525 * 7 5 4 9 9 C 1.54174 * 111.97112 * 319.04428 * 8 7 5 10 10 C 1.50755 * 112.60977 * 318.48941 * 9 8 7 11 11 C 1.54429 * 109.02888 * 93.01401 * 10 9 8 12 12 N 1.39777 * 111.77218 * 282.59263 * 11 10 9 13 13 C 1.46900 * 111.00261 * 189.12567 * 12 11 10 14 14 C 1.53004 * 109.47147 * 64.31038 * 13 12 11 15 15 H 1.09001 * 109.46584 * 305.00020 * 14 13 12 16 16 C 1.52996 * 109.47066 * 64.99634 * 14 13 12 17 17 C 1.52997 * 109.47098 * 185.00341 * 14 13 12 18 18 C 1.50694 * 109.47132 * 174.99811 * 17 14 13 19 19 H 1.08001 * 120.00321 * 359.97438 * 18 17 14 20 20 C 1.37881 * 120.00163 * 179.97438 * 18 17 14 21 21 N 1.31514 * 119.99915 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99707 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.46894 * 89.99939 * 22 20 18 24 24 H 1.48498 * 109.46678 * 209.99457 * 22 20 18 25 25 H 1.48494 * 109.47025 * 329.99784 * 22 20 18 26 26 H 1.09005 * 109.46891 * 54.80948 * 1 2 3 27 27 H 1.09004 * 109.47042 * 174.80882 * 1 2 3 28 28 H 1.08997 * 109.47650 * 294.81107 * 1 2 3 29 29 H 1.08993 * 109.47168 * 239.99367 * 2 1 3 30 30 H 1.08997 * 109.47065 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47087 * 299.99806 * 3 2 1 32 32 H 1.09004 * 109.47173 * 59.99328 * 3 2 1 33 33 H 1.09000 * 109.47122 * 305.61802 * 4 2 1 34 34 H 1.09004 * 109.46992 * 185.61816 * 4 2 1 35 35 H 1.09010 * 109.04959 * 94.14273 * 7 5 4 36 36 H 1.08998 * 108.99618 * 335.21448 * 7 5 4 37 37 H 1.09000 * 108.98663 * 198.40446 * 8 7 5 38 38 H 1.08996 * 108.91501 * 79.63986 * 8 7 5 39 39 H 1.08991 * 108.86018 * 197.68162 * 9 8 7 40 40 H 1.09005 * 108.76999 * 79.23460 * 9 8 7 41 41 H 1.08999 * 109.54305 * 333.15496 * 10 9 8 42 42 H 1.08992 * 109.62100 * 212.92285 * 10 9 8 43 43 H 1.08997 * 109.02656 * 162.00039 * 11 10 9 44 44 H 1.09003 * 109.01955 * 43.17662 * 11 10 9 45 45 H 1.08997 * 109.47376 * 304.30670 * 13 12 11 46 46 H 1.09006 * 109.47266 * 184.30425 * 13 12 11 47 47 H 1.08999 * 109.47319 * 300.00197 * 16 14 13 48 48 H 1.09006 * 109.46802 * 180.02562 * 16 14 13 49 49 H 1.09001 * 109.47105 * 60.00704 * 16 14 13 50 50 H 1.09007 * 109.46677 * 294.99773 * 17 14 13 51 51 H 1.08998 * 109.47544 * 54.99348 * 17 14 13 52 52 H 0.97006 * 119.99701 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.6485 -2.1988 1.1807 6 1 0.5692 -2.2891 1.0577 7 6 2.3505 -2.8585 0.0204 8 6 1.4729 -3.9398 -0.6325 9 6 0.7169 -4.7799 0.4161 10 6 1.5733 -5.1279 1.6069 11 6 1.3686 -4.0600 2.7036 12 7 2.0684 -2.8840 2.4192 13 6 2.0408 -1.9648 3.5648 14 6 2.7822 -2.5974 4.7442 15 1 2.3524 -3.5753 4.9612 16 6 4.2618 -2.7579 4.3896 17 6 2.6471 -1.6968 5.9737 18 6 3.2711 -2.3764 7.1652 19 1 3.7189 -3.3532 7.0565 20 6 3.2705 -1.7513 8.3941 21 7 3.8146 -2.3447 9.4340 22 14 2.4953 -0.0621 8.5822 23 1 1.0608 -0.2124 8.9355 24 1 3.1942 0.6861 9.6578 25 1 2.6148 0.6825 7.3030 26 1 -0.3633 0.5923 -0.8399 27 1 -0.3633 -1.0235 -0.0930 28 1 -0.3634 0.4312 0.9327 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.5967 -0.2687 2.1364 34 1 3.1253 -0.6350 1.3011 35 1 3.2733 -3.3165 0.3768 36 1 2.5943 -2.1007 -0.7241 37 1 2.1058 -4.5997 -1.2260 38 1 0.7490 -3.4580 -1.2897 39 1 0.3736 -5.7022 -0.0523 40 1 -0.1503 -4.2154 0.7588 41 1 2.6215 -5.1479 1.3088 42 1 1.2849 -6.1059 1.9920 43 1 1.7160 -4.4585 3.6568 44 1 0.3058 -3.8308 2.7821 45 1 1.0068 -1.7687 3.8485 46 1 2.5263 -1.0280 3.2908 47 1 4.3580 -3.3995 3.5137 48 1 4.7899 -3.2090 5.2297 49 1 4.6917 -1.7800 4.1727 50 1 3.1548 -0.7502 5.7882 51 1 1.5920 -1.5101 6.1732 52 1 3.8138 -1.9050 10.2987 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663836244.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:15 Heat of formation + Delta-G solvation = -28.167239 kcal Electronic energy + Delta-G solvation = -24163.527870 eV Core-core repulsion = 21161.731337 eV Total energy + Delta-G solvation = -3001.796533 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.09698 -36.51864 -35.86523 -33.55985 -32.13375 -31.82128 -27.94615 -27.40213 -27.29753 -26.73886 -24.58773 -23.46746 -22.25276 -20.56960 -20.35009 -18.78710 -18.65987 -16.76694 -16.19515 -15.61255 -15.08237 -14.73622 -14.60670 -14.26773 -13.84633 -13.72877 -13.64554 -13.25757 -12.99206 -12.89728 -12.44102 -12.33381 -12.15861 -11.92961 -11.81440 -11.67089 -11.56685 -11.21066 -11.10219 -10.91705 -10.87065 -10.63915 -10.59137 -10.53018 -10.38516 -10.18408 -10.17350 -10.10264 -9.83636 -9.45137 -9.32257 -8.98515 -8.48083 -7.79275 -5.98705 -3.95074 3.33232 3.40752 3.44645 4.10229 4.49759 4.67081 4.67909 4.84102 4.92826 4.94881 4.96791 5.16974 5.25560 5.30642 5.35075 5.42268 5.49847 5.53937 5.61011 5.64901 5.71371 5.72969 5.78839 5.80388 5.88346 5.90683 5.94390 5.99272 6.04128 6.08939 6.11672 6.12022 6.17898 6.20977 6.30622 6.36336 6.39932 6.45169 6.52363 6.54798 6.69741 6.91884 7.12345 7.20421 7.35106 7.49166 7.55857 7.80583 7.87510 8.61681 9.07555 9.64616 11.14847 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.016742 B = 0.004727 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.072959 B = 5921.530788 C = 7044.850680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.120 4.120 5 C 0.097 3.903 6 H 0.046 0.954 7 C -0.116 4.116 8 C -0.115 4.115 9 C -0.119 4.119 10 C -0.117 4.117 11 C 0.070 3.930 12 N -0.545 5.545 13 C 0.055 3.945 14 C -0.075 4.075 15 H 0.061 0.939 16 C -0.122 4.122 17 C -0.009 4.009 18 C -0.510 4.510 19 H 0.073 0.927 20 C 0.065 3.935 21 N -0.906 5.906 22 Si 0.877 3.123 23 H -0.279 1.279 24 H -0.289 1.289 25 H -0.266 1.266 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.082 0.918 44 H 0.011 0.989 45 H 0.024 0.976 46 H 0.079 0.921 47 H 0.044 0.956 48 H 0.057 0.943 49 H 0.037 0.963 50 H 0.015 0.985 51 H 0.006 0.994 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.033 1.156 -22.407 23.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.205 4.205 4 C -0.158 4.158 5 C -0.010 4.010 6 H 0.064 0.936 7 C -0.154 4.154 8 C -0.153 4.153 9 C -0.157 4.157 10 C -0.155 4.155 11 C -0.059 4.059 12 N -0.269 5.269 13 C -0.072 4.072 14 C -0.094 4.094 15 H 0.079 0.921 16 C -0.179 4.179 17 C -0.047 4.047 18 C -0.548 4.548 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.546 5.546 22 Si 0.705 3.295 23 H -0.205 1.205 24 H -0.215 1.215 25 H -0.191 1.191 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.029 0.971 45 H 0.042 0.958 46 H 0.097 0.903 47 H 0.063 0.937 48 H 0.076 0.924 49 H 0.056 0.944 50 H 0.033 0.967 51 H 0.025 0.975 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.563 1.031 -22.296 23.002 hybrid contribution -1.305 1.086 0.465 1.761 sum -6.869 2.118 -21.830 22.983 Atomic orbital electron populations 1.21886 0.95590 1.01555 1.01511 1.21186 0.95676 0.96077 0.98656 1.21836 1.01042 0.96039 1.01537 1.22002 1.01836 0.94248 0.97683 1.21293 0.97347 0.92431 0.89944 0.93591 1.21547 0.99745 0.97426 0.96637 1.21890 0.98569 0.97297 0.97511 1.21417 0.98748 0.99161 0.96354 1.21472 1.01081 0.97873 0.95088 1.21024 0.94878 0.90757 0.99248 1.58857 1.58646 1.06068 1.03284 1.22483 0.98469 0.96043 0.90175 1.21090 0.95703 0.99321 0.93242 0.92072 1.21564 0.95902 1.00290 1.00177 1.19611 0.95954 0.95505 0.93620 1.21138 1.36878 1.05029 0.91776 0.90867 1.25023 0.95118 0.97471 0.95952 1.69919 1.45710 1.38500 1.00422 0.86822 0.79521 0.85269 0.77920 1.20488 1.21509 1.19071 0.93075 0.92675 0.92795 0.90954 0.92639 0.93003 0.92695 0.91087 0.90965 0.90636 0.91889 0.92527 0.92894 0.92787 0.92727 0.90768 0.91895 0.90013 0.97066 0.95805 0.90274 0.93712 0.92434 0.94368 0.96713 0.97545 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.84 37.16 0.33 -1.03 16 2 C -0.10 -0.92 2.78 -90.62 -0.25 -1.17 16 3 C -0.15 -1.32 9.19 37.16 0.34 -0.98 16 4 C -0.12 -1.37 2.88 -26.73 -0.08 -1.45 16 5 C 0.10 1.15 1.79 -68.40 -0.12 1.03 16 6 H 0.05 0.57 5.06 -51.93 -0.26 0.30 16 7 C -0.12 -1.22 4.84 -27.40 -0.13 -1.36 16 8 C -0.11 -1.10 5.91 -25.69 -0.15 -1.25 16 9 C -0.12 -1.22 5.32 -27.24 -0.14 -1.37 16 10 C -0.12 -1.36 5.65 -27.11 -0.15 -1.51 16 11 C 0.07 0.98 4.82 -6.75 -0.03 0.95 16 12 N -0.54 -7.69 3.39 -231.98 -0.79 -8.47 16 13 C 0.05 0.90 3.47 -3.82 -0.01 0.89 16 14 C -0.07 -1.48 2.20 -90.62 -0.20 -1.68 16 15 H 0.06 1.26 6.08 -51.93 -0.32 0.95 16 16 C -0.12 -2.35 8.89 37.16 0.33 -2.02 16 17 C -0.01 -0.22 3.52 -27.89 -0.10 -0.31 16 18 C -0.51 -14.51 8.96 -34.44 -0.31 -14.82 16 19 H 0.07 2.24 7.30 -52.49 -0.38 1.86 16 20 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 21 N -0.91 -28.18 13.96 55.43 0.77 -27.41 16 22 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.51 6.76 -51.93 -0.35 0.16 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.65 6.13 -51.93 -0.32 0.33 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.90 6.18 -51.93 -0.32 0.58 16 34 H 0.07 0.87 8.05 -51.93 -0.42 0.46 16 35 H 0.07 0.91 7.26 -51.92 -0.38 0.53 16 36 H 0.06 0.61 5.74 -51.93 -0.30 0.31 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.59 6.57 -51.93 -0.34 0.25 16 41 H 0.07 0.90 7.11 -51.93 -0.37 0.53 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 1.28 5.73 -51.93 -0.30 0.98 16 44 H 0.01 0.16 7.54 -51.93 -0.39 -0.23 16 45 H 0.02 0.41 8.12 -51.93 -0.42 -0.02 16 46 H 0.08 1.27 5.44 -51.93 -0.28 0.99 16 47 H 0.04 0.78 7.75 -51.93 -0.40 0.38 16 48 H 0.06 1.23 6.95 -51.93 -0.36 0.87 16 49 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 50 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 51 H 0.01 0.15 7.57 -51.93 -0.39 -0.24 16 52 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 368.37 15.07 5.55 5.55 Total: -1.00 -29.36 368.37 -9.99 -39.34 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -10.07 Total: -2.08 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: -0.78 Total: -24.28 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.01 Total: -35.88 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.36 -9.99 -39.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663836244.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.177 kcal (2) G-P(sol) polarization free energy of solvation -29.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds