Wall clock time and date at job start Tue Mar 31 2020 06:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46741 * 2 1 4 4 C 1.52996 * 109.47518 * 119.99851 * 2 1 3 5 5 C 1.52995 * 109.47236 * 184.99741 * 4 2 1 6 6 C 1.53006 * 109.47234 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47127 * 295.00428 * 6 5 4 8 8 C 1.52996 * 109.47131 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47518 * 59.99828 * 8 7 6 10 10 C 1.53005 * 109.46632 * 300.00318 * 9 8 7 11 11 C 1.52996 * 109.47245 * 59.99973 * 10 9 8 12 12 N 1.46901 * 109.46769 * 240.00193 * 2 1 3 13 13 C 1.46901 * 111.00166 * 85.00156 * 12 2 1 14 14 C 1.53000 * 109.47220 * 179.97438 * 13 12 2 15 15 C 1.52998 * 109.47175 * 299.99874 * 14 13 12 16 16 C 1.53008 * 109.46962 * 59.99549 * 14 13 12 17 17 C 1.50697 * 109.47208 * 179.97438 * 14 13 12 18 18 H 1.08005 * 119.99768 * 0.02562 * 17 14 13 19 19 C 1.37874 * 119.99925 * 179.97438 * 17 14 13 20 20 N 1.31514 * 120.00091 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 119.99966 * 180.02562 * 19 17 14 22 22 H 1.48503 * 109.47169 * 90.00058 * 21 19 17 23 23 H 1.48501 * 109.47195 * 209.99774 * 21 19 17 24 24 H 1.48500 * 109.46991 * 330.00288 * 21 19 17 25 25 H 1.09002 * 109.47398 * 60.00102 * 1 2 3 26 26 H 1.09001 * 109.47194 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46724 * 299.99624 * 1 2 3 28 28 H 1.09006 * 109.46758 * 64.99568 * 4 2 1 29 29 H 1.09003 * 109.47204 * 305.00622 * 4 2 1 30 30 H 1.09007 * 109.46945 * 60.00508 * 5 4 2 31 31 H 1.08995 * 109.47339 * 299.99806 * 5 4 2 32 32 H 1.09001 * 109.47002 * 55.00002 * 6 5 4 33 33 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 34 34 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 35 35 H 1.09001 * 109.46997 * 299.99574 * 8 7 6 36 36 H 1.08996 * 109.47134 * 180.02562 * 8 7 6 37 37 H 1.08992 * 109.47132 * 180.02562 * 9 8 7 38 38 H 1.08992 * 109.46645 * 59.99985 * 9 8 7 39 39 H 1.09001 * 109.46962 * 299.99689 * 10 9 8 40 40 H 1.08996 * 109.46524 * 179.97438 * 10 9 8 41 41 H 1.09000 * 109.46870 * 179.97438 * 11 10 9 42 42 H 1.09001 * 109.47372 * 59.99967 * 11 10 9 43 43 H 1.00893 * 110.99837 * 321.03889 * 12 2 1 44 44 H 1.09004 * 109.46505 * 299.99418 * 13 12 2 45 45 H 1.08990 * 109.47407 * 59.99241 * 13 12 2 46 46 H 1.09005 * 109.47343 * 59.99364 * 15 14 13 47 47 H 1.08991 * 109.47522 * 180.02562 * 15 14 13 48 48 H 1.09002 * 109.46809 * 299.99796 * 15 14 13 49 49 H 1.08994 * 109.47090 * 60.00328 * 16 14 13 50 50 H 1.09004 * 109.46840 * 180.02562 * 16 14 13 51 51 H 1.08996 * 109.47014 * 300.00309 * 16 14 13 52 52 H 0.97000 * 120.00103 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3135 6 6 4.0750 -1.3350 2.5625 7 6 3.5651 -0.6144 3.8121 8 6 4.0758 -1.3357 5.0609 9 6 5.6058 -1.3351 5.0605 10 6 6.1156 -2.0558 3.8109 11 6 5.6050 -1.3344 2.5620 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2226 -2.3469 14 6 2.5961 -0.5328 -3.5743 15 6 3.9934 -1.0850 -3.2853 16 6 1.6471 -1.6893 -3.8954 17 6 2.6599 0.4058 -4.7515 18 1 2.3641 1.4381 -4.6358 19 6 3.0969 -0.0530 -5.9760 20 7 3.4576 -1.3099 -6.1168 21 14 3.1768 1.1106 -7.4351 22 1 4.5125 1.7579 -7.4796 23 1 2.9545 0.3476 -8.6896 24 1 2.1267 2.1515 -7.2962 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.7517 -1.7715 1.2056 29 1 1.6054 -0.2617 2.1370 30 1 3.8532 0.4371 1.3572 31 1 3.9994 -1.0728 0.4259 32 1 3.7117 -2.3627 2.5621 33 1 3.9283 0.4133 3.8125 34 1 2.4750 -0.6144 3.8121 35 1 3.7128 -2.3635 5.0607 36 1 3.7121 -0.8226 5.9511 37 1 5.9695 -1.8494 5.9500 38 1 5.9686 -0.3074 5.0607 39 1 5.7527 -3.0836 3.8107 40 1 7.2056 -2.0550 3.8104 41 1 5.9686 -1.8476 1.6718 42 1 5.9680 -0.3066 2.5622 43 1 1.4495 -1.4979 -1.4100 44 1 1.0869 0.6163 -2.5525 45 1 2.7587 1.0462 -2.1183 46 1 3.9469 -1.7640 -2.4338 47 1 4.3596 -1.6228 -4.1597 48 1 4.6694 -0.2612 -3.0565 49 1 0.6516 -1.2959 -4.1013 50 1 2.0133 -2.2277 -4.7695 51 1 1.6005 -2.3682 -3.0440 52 1 3.7654 -1.6325 -6.9782 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664966685.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:23 Heat of formation + Delta-G solvation = -55.282240 kcal Electronic energy + Delta-G solvation = -23296.048391 eV Core-core repulsion = 20293.076064 eV Total energy + Delta-G solvation = -3002.972327 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 281.241 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.95276 -37.47706 -35.30424 -33.06882 -31.42079 -30.80965 -29.09725 -27.89708 -25.51969 -25.18248 -24.19265 -23.41776 -22.54002 -20.79082 -20.13378 -19.66344 -18.41205 -15.89922 -15.50337 -15.13067 -14.97609 -14.46618 -14.27255 -14.21674 -13.91948 -13.70577 -13.14318 -12.85472 -12.64165 -12.48883 -12.34047 -12.11754 -11.98091 -11.69409 -11.62381 -11.20535 -11.15504 -11.06344 -10.95623 -10.86126 -10.71715 -10.58298 -10.50305 -10.46062 -10.31201 -10.13307 -10.01634 -9.87580 -9.81451 -9.34245 -8.98547 -8.58010 -8.25805 -7.55863 -5.88169 -3.98361 3.32857 3.39720 3.42627 4.46259 4.60145 4.67632 4.71886 4.89604 5.01135 5.15970 5.24737 5.37058 5.37312 5.42451 5.45989 5.47915 5.52221 5.58662 5.65533 5.67579 5.88641 5.93043 5.94500 6.00361 6.03190 6.09414 6.10209 6.18513 6.20367 6.27549 6.30536 6.37724 6.44216 6.47064 6.58480 6.65629 6.77940 6.79496 6.95168 7.13182 7.22033 7.43400 7.53300 7.79687 7.81804 7.90520 8.08583 8.26367 8.39740 8.60309 9.03432 9.66506 11.12220 Molecular weight = 281.24amu Principal moments of inertia in cm(-1) A = 0.024016 B = 0.003336 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.608137 B = 8390.557750 C = 9053.422319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.079 3.921 3 H 0.069 0.931 4 C -0.102 4.102 5 C -0.106 4.106 6 C -0.086 4.086 7 C -0.115 4.115 8 C -0.120 4.120 9 C -0.119 4.119 10 C -0.120 4.120 11 C -0.115 4.115 12 N -0.678 5.678 13 C 0.076 3.924 14 C 0.069 3.931 15 C -0.117 4.117 16 C -0.131 4.131 17 C -0.506 4.506 18 H 0.051 0.949 19 C 0.065 3.935 20 N -0.885 5.885 21 Si 0.887 3.113 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.276 1.276 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.336 0.664 44 H 0.011 0.989 45 H 0.053 0.947 46 H 0.020 0.980 47 H 0.072 0.928 48 H 0.016 0.984 49 H 0.017 0.983 50 H 0.082 0.918 51 H 0.011 0.989 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.118 -0.908 19.716 19.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.032 4.032 3 H 0.088 0.912 4 C -0.140 4.140 5 C -0.144 4.144 6 C -0.105 4.105 7 C -0.152 4.152 8 C -0.157 4.157 9 C -0.156 4.156 10 C -0.157 4.157 11 C -0.152 4.152 12 N -0.309 5.309 13 C -0.052 4.052 14 C 0.069 3.931 15 C -0.175 4.175 16 C -0.189 4.189 17 C -0.545 4.545 18 H 0.069 0.931 19 C -0.136 4.136 20 N -0.524 5.524 21 Si 0.715 3.285 22 H -0.208 1.208 23 H -0.214 1.214 24 H -0.201 1.201 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.155 0.845 44 H 0.029 0.971 45 H 0.072 0.928 46 H 0.039 0.961 47 H 0.091 0.909 48 H 0.036 0.964 49 H 0.037 0.963 50 H 0.101 0.899 51 H 0.029 0.971 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.853 -0.947 19.726 19.767 hybrid contribution -0.984 0.832 -1.084 1.684 sum -0.130 -0.115 18.642 18.642 Atomic orbital electron populations 1.22506 0.98329 1.01601 1.01519 1.21588 0.91620 0.98057 0.91894 0.91240 1.21574 0.96002 1.00284 0.96126 1.21522 0.95369 1.00004 0.97488 1.21189 0.94873 0.99626 0.94783 1.21641 1.00278 0.99208 0.94119 1.21541 0.95610 1.00676 0.97905 1.21529 0.95860 1.00592 0.97659 1.21539 0.99878 0.99421 0.94879 1.21582 0.95592 1.00593 0.97483 1.60701 1.56277 1.09974 1.03961 1.22139 0.97571 0.94829 0.90665 1.18077 0.92505 0.92578 0.89966 1.21618 0.97719 0.98557 0.99598 1.21826 0.97775 0.98804 1.00527 1.21133 1.43325 0.95878 0.94136 0.93106 1.24880 0.95297 0.94966 0.98431 1.69837 1.44670 1.13955 1.23925 0.86681 0.78281 0.81055 0.82442 1.20809 1.21354 1.20150 0.92742 0.92855 0.92981 0.92465 0.92715 0.92923 0.90067 0.91603 0.92293 0.91962 0.92245 0.92553 0.92583 0.92221 0.92199 0.92395 0.91778 0.92217 0.84511 0.97103 0.92836 0.96085 0.90901 0.96438 0.96342 0.89928 0.97058 0.93247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 9.16 37.16 0.34 -2.04 16 2 C 0.08 1.14 2.59 -67.71 -0.18 0.97 16 3 H 0.07 1.06 7.80 -51.93 -0.40 0.65 16 4 C -0.10 -1.26 4.65 -26.74 -0.12 -1.39 16 5 C -0.11 -1.35 4.57 -26.73 -0.12 -1.48 16 6 C -0.09 -0.94 2.19 -90.62 -0.20 -1.14 16 7 C -0.12 -1.11 4.96 -26.73 -0.13 -1.24 16 8 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 9 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 10 C -0.12 -1.11 5.92 -26.73 -0.16 -1.26 16 11 C -0.11 -1.22 5.20 -26.73 -0.14 -1.36 16 12 N -0.68 -11.81 4.91 -106.73 -0.52 -12.34 16 13 C 0.08 1.59 4.38 -3.82 -0.02 1.58 16 14 C 0.07 1.68 0.57 -155.66 -0.09 1.59 16 15 C -0.12 -2.86 8.09 37.16 0.30 -2.56 16 16 C -0.13 -3.12 7.92 37.16 0.29 -2.83 16 17 C -0.51 -13.73 8.01 -34.44 -0.28 -14.01 16 18 H 0.05 1.38 7.74 -52.48 -0.41 0.98 16 19 C 0.06 1.78 5.15 -17.82 -0.09 1.68 16 20 N -0.88 -24.68 9.35 55.43 0.52 -24.17 16 21 Si 0.89 21.29 29.54 -169.99 -5.02 16.26 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H 0.05 0.79 7.45 -51.93 -0.39 0.40 16 26 H 0.05 0.68 8.13 -51.93 -0.42 0.26 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.61 6.57 -51.93 -0.34 0.27 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 1.24 7.75 -51.93 -0.40 0.84 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.59 6.57 -51.93 -0.34 0.25 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.34 5.92 6.51 -39.30 -0.26 5.66 16 44 H 0.01 0.23 7.44 -51.93 -0.39 -0.16 16 45 H 0.05 1.15 8.05 -51.93 -0.42 0.74 16 46 H 0.02 0.46 7.60 -51.93 -0.39 0.07 16 47 H 0.07 1.96 6.07 -51.93 -0.32 1.64 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 50 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 51 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 52 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 381.10 15.07 5.74 5.74 Total: -1.00 -26.49 381.10 -10.80 -37.29 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -10.61 Total: 3.07 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: -0.90 Total: -25.86 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: -0.01 Total: -36.50 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -26.49 -10.80 -37.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664966685.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.997 kcal (2) G-P(sol) polarization free energy of solvation -26.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds