Wall clock time and date at job start Tue Mar 31 2020 05:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 O 1.42903 * 109.46726 * 179.97438 * 10 9 7 12 12 C 1.36052 * 116.99556 * 180.02562 * 11 10 9 13 13 C 1.38794 * 120.02754 * 269.72368 * 12 11 10 14 14 F 1.35101 * 120.00753 * 359.97438 * 13 12 11 15 15 C 1.38529 * 119.97778 * 179.70137 * 13 12 11 16 16 F 1.35101 * 119.99025 * 180.30194 * 15 13 12 17 17 C 1.38592 * 120.02427 * 0.57866 * 15 13 12 18 18 F 1.35099 * 119.97883 * 179.70151 * 17 15 13 19 19 C 1.38587 * 120.04544 * 359.72006 * 17 15 13 20 20 F 1.35099 * 119.98303 * 179.97438 * 19 17 15 21 21 C 1.38528 * 120.02732 * 359.97438 * 19 17 15 22 22 F 1.35101 * 120.01453 * 179.97438 * 21 19 17 23 23 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 25 25 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 26 26 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 27 27 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 8 1.5308 -4.8996 0.0011 12 6 2.2719 -6.0406 0.0018 13 6 2.6454 -6.6268 -1.1996 14 9 2.2727 -6.0649 -2.3703 15 6 3.4052 -7.7852 -1.1978 16 9 3.7741 -8.3526 -2.3670 17 6 3.7823 -8.3653 0.0031 18 9 4.5181 -9.4983 0.0037 19 6 3.4046 -7.7842 1.2032 20 9 3.7724 -8.3511 2.3731 21 6 2.6502 -6.6224 1.2038 22 9 2.2817 -6.0564 2.3739 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5568 0.8902 26 1 2.8720 -3.6043 -0.8894 27 1 2.8720 -3.6043 0.8905 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036302054.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:39 Heat of formation + Delta-G solvation = -233.988457 kcal Electronic energy + Delta-G solvation = -21662.862813 eV Core-core repulsion = 17222.312812 eV Total energy + Delta-G solvation = -4440.550001 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.042 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.31348 -49.99421 -49.50097 -49.00295 -48.67212 -39.69327 -37.35458 -33.47991 -30.89931 -30.44279 -29.34294 -25.17762 -23.86898 -23.55599 -21.27915 -19.53944 -19.22012 -18.86751 -17.64316 -17.26162 -17.01682 -16.71186 -16.45347 -16.30896 -16.00004 -15.99101 -15.25049 -15.24625 -14.82316 -14.76542 -14.67616 -14.63091 -14.14508 -13.40934 -13.03443 -12.43173 -12.34848 -11.63823 -11.32176 -11.16967 -10.78004 -10.72614 -9.81236 -9.65830 -9.45998 -9.19496 -9.08621 -8.50204 -6.15974 -4.21605 -0.06827 -0.05616 2.17736 2.43914 3.16989 3.22601 3.25603 3.30406 3.31619 3.36590 3.66763 3.81779 4.28614 4.42315 4.44881 4.86671 4.99674 5.20562 5.30133 5.76562 5.85666 5.94046 6.47346 7.16383 7.53815 7.55709 7.84223 8.14286 8.83220 9.43130 10.95292 Molecular weight = 282.04amu Principal moments of inertia in cm(-1) A = 0.025984 B = 0.004265 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.343365 B = 6563.604779 C = 7155.540937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.028 3.972 10 C 0.068 3.932 11 O -0.311 6.311 12 C 0.098 3.902 13 C 0.097 3.903 14 F -0.093 7.093 15 C 0.068 3.932 16 F -0.101 7.101 17 C 0.077 3.923 18 F -0.101 7.101 19 C 0.068 3.932 20 F -0.101 7.101 21 C 0.097 3.903 22 F -0.093 7.093 23 H 0.265 0.735 24 H 0.031 0.969 25 H 0.031 0.969 26 H 0.052 0.948 27 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.079 -16.720 0.005 18.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.004 4.004 11 O -0.228 6.228 12 C 0.050 3.950 13 C 0.076 3.924 14 F -0.071 7.071 15 C 0.046 3.954 16 F -0.079 7.079 17 C 0.055 3.945 18 F -0.079 7.079 19 C 0.046 3.954 20 F -0.079 7.079 21 C 0.075 3.925 22 F -0.071 7.071 23 H 0.075 0.925 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.746 -16.591 0.005 17.910 hybrid contribution 0.764 0.647 -0.001 1.001 sum 7.510 -15.944 0.004 17.624 Atomic orbital electron populations 1.69956 1.06107 1.27242 1.49257 1.24976 0.94918 0.99387 0.94746 0.86528 0.79504 0.82474 0.78770 1.20042 1.21062 1.20037 1.20895 0.93036 0.89996 1.52873 0.92337 1.19144 0.94096 0.88492 0.99224 1.23643 0.97176 0.79613 0.99988 1.86320 1.31661 1.11474 1.93322 1.18249 0.95768 0.92553 0.88451 1.17353 0.99223 0.92941 0.82931 1.91652 1.88765 1.83531 1.43117 1.16905 1.02587 0.94342 0.81592 1.91619 1.89428 1.83415 1.43486 1.16649 0.99652 0.87379 0.90783 1.91615 1.73615 1.45783 1.96892 1.16904 1.02679 0.94260 0.81582 1.91618 1.89457 1.83443 1.43431 1.17358 0.99324 0.92827 0.82952 1.91652 1.88885 1.83356 1.43171 0.92532 0.95081 0.95069 0.92917 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.82 13.29 55.43 0.74 -25.08 15 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 15 3 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 15 4 H -0.27 -6.24 7.11 56.52 0.40 -5.83 15 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 15 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 7 C -0.53 -14.32 9.11 -34.44 -0.31 -14.64 15 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 15 9 C 0.03 0.69 5.34 -27.88 -0.15 0.54 15 10 C 0.07 1.36 6.00 37.16 0.22 1.58 15 11 O -0.31 -5.73 9.78 -19.91 -0.19 -5.93 15 12 C 0.10 1.43 5.73 -39.17 -0.22 1.21 15 13 C 0.10 1.28 7.31 -39.27 -0.29 1.00 15 14 F -0.09 -1.37 17.02 2.25 0.04 -1.33 15 15 C 0.07 0.77 7.31 -39.34 -0.29 0.49 15 16 F -0.10 -1.18 17.09 2.25 0.04 -1.14 15 17 C 0.08 0.84 7.31 -39.32 -0.29 0.55 15 18 F -0.10 -1.10 17.09 2.25 0.04 -1.06 15 19 C 0.07 0.77 7.31 -39.35 -0.29 0.49 15 20 F -0.10 -1.18 17.09 2.25 0.04 -1.14 15 21 C 0.10 1.28 7.31 -39.27 -0.29 0.99 15 22 F -0.09 -1.37 17.02 2.25 0.04 -1.33 15 23 H 0.26 7.26 8.31 -40.82 -0.34 6.92 15 24 H 0.03 0.83 8.14 -51.93 -0.42 0.40 15 25 H 0.03 0.83 8.14 -51.93 -0.42 0.41 15 26 H 0.05 1.00 8.14 -51.93 -0.42 0.57 15 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 15 LS Contribution 276.04 15.07 4.16 4.16 Total: -1.00 -27.69 276.04 -3.36 -31.05 By element: Atomic # 1 Polarization: -6.60 SS G_CDS: -1.23 Total: -7.84 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -2.00 Total: -6.16 kcal Atomic # 7 Polarization: -25.82 SS G_CDS: 0.74 Total: -25.08 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -0.19 Total: -5.93 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 0.19 Total: -6.00 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.69 -3.36 -31.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036302054.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.941 kcal (2) G-P(sol) polarization free energy of solvation -27.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds