Wall clock time and date at job start Tue Mar 31 2020 05:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47323 * 2 1 4 4 C 1.50708 * 109.46987 * 119.99874 * 2 1 3 5 5 H 1.08003 * 120.00084 * 119.99722 * 4 2 1 6 6 C 1.37879 * 119.99711 * 299.99483 * 4 2 1 7 7 N 1.31512 * 120.00080 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99770 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47109 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46468 * 120.00281 * 8 6 4 11 11 H 1.48495 * 109.47089 * 240.00235 * 8 6 4 12 12 N 1.46495 * 109.47102 * 239.99339 * 2 1 3 13 13 C 1.40352 * 120.00105 * 85.00164 * 12 2 1 14 14 N 1.34073 * 125.86020 * 359.97438 * 13 12 2 15 15 C 1.32488 * 109.24622 * 179.97438 * 14 13 12 16 16 S 1.76264 * 141.83179 * 179.97438 * 15 14 13 17 17 C 1.75794 * 90.69476 * 179.42617 * 16 15 14 18 18 C 1.30932 * 109.79499 * 0.42992 * 17 16 15 19 19 N 1.35072 * 108.94834 * 359.72902 * 15 14 13 20 20 C 1.34902 * 125.86625 * 180.02562 * 13 12 2 21 21 N 1.48741 * 126.50986 * 0.02562 * 20 13 12 22 22 O 1.21803 * 119.99813 * 270.00011 * 21 20 13 23 23 O 1.21799 * 119.99984 * 89.72691 * 21 20 13 24 24 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47070 * 300.00185 * 1 2 3 26 26 H 1.08998 * 109.47483 * 60.00205 * 1 2 3 27 27 H 0.97001 * 120.00158 * 179.97438 * 7 6 4 28 28 H 0.96999 * 120.00648 * 265.00433 * 12 2 1 29 29 H 1.07999 * 125.10014 * 179.97438 * 17 16 15 30 30 H 1.08001 * 121.84022 * 179.59063 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5886 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.1463 -2.2869 3.6040 10 1 3.1466 -0.1871 4.8165 11 1 1.1660 -1.5864 4.8162 12 7 2.0183 -0.6907 -1.1961 13 6 2.1524 0.0093 -2.4051 14 7 1.8687 1.3054 -2.5979 15 6 2.1155 1.6234 -3.8601 16 16 2.0583 2.9801 -4.9841 17 6 2.6768 1.9624 -6.2773 18 6 2.8694 0.7466 -5.8312 19 7 2.5724 0.5292 -4.5069 20 6 2.5879 -0.5066 -3.5730 21 7 3.0112 -1.9116 -3.8167 22 8 4.1755 -2.2328 -3.6591 23 8 2.1927 -2.7418 -4.1690 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.7082 1.1611 3.4843 28 1 2.2489 -1.6319 -1.1525 29 1 2.8624 2.2892 -7.2898 30 1 3.2416 -0.0418 -6.4685 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060349478.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:33 Heat of formation + Delta-G solvation = 112.466221 kcal Electronic energy + Delta-G solvation = -19586.888985 eV Core-core repulsion = 16321.645015 eV Total energy + Delta-G solvation = -3265.243970 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.057 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.96789 -41.60991 -37.46475 -36.38592 -35.32275 -32.66294 -31.32034 -29.95844 -27.97219 -25.81460 -25.26309 -24.22664 -21.93172 -21.31442 -20.15648 -19.28290 -18.72552 -17.68715 -17.43465 -16.80525 -16.31608 -15.78679 -15.53146 -14.81269 -14.60719 -13.69738 -13.58630 -12.93019 -12.53827 -11.84689 -11.68077 -11.57933 -11.32297 -11.17999 -11.10131 -11.04394 -10.86481 -10.79575 -10.47282 -10.29537 -10.11171 -9.80610 -9.10403 -8.57481 -8.12242 -7.36826 -6.19677 -4.28914 0.36437 0.58058 0.63621 1.11510 1.39618 1.77798 2.41904 2.87582 3.21847 3.29707 3.33702 3.74497 4.13897 4.31128 4.62736 4.86244 4.96642 5.13585 5.46076 5.75417 6.07714 6.54430 6.70583 6.90276 7.00841 7.18827 7.26872 7.57928 7.73371 7.75331 7.93418 8.09442 8.39456 8.77416 9.37981 10.86422 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.021034 B = 0.005168 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.859103 B = 5416.793903 C = 6364.439743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.274 3.726 3 H 0.052 0.948 4 C -0.536 4.536 5 H 0.063 0.937 6 C 0.069 3.931 7 N -0.883 5.883 8 Si 0.904 3.096 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.281 1.281 12 N -0.682 5.682 13 C 0.441 3.559 14 N -0.462 5.462 15 C 0.212 3.788 16 S 0.229 5.771 17 C -0.237 4.237 18 C 0.060 3.940 19 N -0.388 5.388 20 C -0.116 4.116 21 N 0.061 4.939 22 O -0.131 6.131 23 O -0.132 6.132 24 H 0.028 0.972 25 H 0.094 0.906 26 H 0.015 0.985 27 H 0.265 0.735 28 H 0.402 0.598 29 H 0.202 0.798 30 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.362 3.653 -17.489 18.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.173 3.827 3 H 0.070 0.930 4 C -0.575 4.575 5 H 0.081 0.919 6 C -0.135 4.135 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.207 1.207 12 N -0.311 5.311 13 C 0.203 3.797 14 N -0.195 5.195 15 C -0.155 4.155 16 S 0.477 5.523 17 C -0.375 4.375 18 C -0.070 4.070 19 N -0.075 5.075 20 C -0.310 4.310 21 N 0.593 4.407 22 O -0.355 6.355 23 O -0.355 6.355 24 H 0.047 0.953 25 H 0.112 0.888 26 H 0.034 0.966 27 H 0.075 0.925 28 H 0.238 0.762 29 H 0.219 0.781 30 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.338 6.343 -16.305 17.546 hybrid contribution 1.216 -3.168 -0.047 3.393 sum 2.554 3.175 -16.352 16.852 Atomic orbital electron populations 1.22146 0.98191 0.99430 1.01002 1.18918 0.91125 0.93762 0.78874 0.92974 1.21208 1.32709 1.13473 0.90068 0.91929 1.24852 0.94643 0.94925 0.99033 1.69897 1.35709 1.22406 1.23984 0.86343 0.78668 0.79595 0.82259 1.19627 1.20750 1.20739 1.45463 1.68536 1.11669 1.05441 1.17137 0.89846 0.87818 0.84926 1.70842 1.27596 1.10554 1.10547 1.26381 1.02700 0.92405 0.94061 1.84914 1.70179 1.02900 0.94292 1.25012 1.11426 0.95533 1.05574 1.20381 1.03775 0.99870 0.82983 1.42778 1.48481 1.08379 1.07882 1.19979 1.38757 0.80798 0.91429 1.42375 0.99919 1.00879 0.97525 1.94551 1.02806 1.84912 1.53185 1.94543 1.49183 1.45367 1.46426 0.95315 0.88781 0.96578 0.92489 0.76178 0.78089 0.80413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.28 37.16 0.34 -3.33 16 2 C 0.27 6.96 2.74 -69.08 -0.19 6.77 16 3 H 0.05 1.47 7.84 -51.93 -0.41 1.06 16 4 C -0.54 -14.41 8.73 -34.44 -0.30 -14.71 16 5 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 6 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 7 N -0.88 -24.49 11.32 55.43 0.63 -23.86 16 8 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.68 -15.36 5.29 -55.38 -0.29 -15.66 16 13 C 0.44 9.32 7.69 -153.76 -1.18 8.14 16 14 N -0.46 -9.48 10.80 -12.53 -0.14 -9.62 16 15 C 0.21 3.47 8.92 -88.67 -0.79 2.68 16 16 S 0.23 2.33 23.37 -107.50 -2.51 -0.18 16 17 C -0.24 -1.80 11.11 29.03 0.32 -1.48 16 18 C 0.06 0.64 11.26 -16.73 -0.19 0.45 16 19 N -0.39 -6.11 3.20 -59.97 -0.19 -6.30 16 20 C -0.12 -2.19 8.06 -139.84 -1.13 -3.32 16 21 N 0.06 1.12 4.48 33.78 0.15 1.27 16 22 O -0.13 -2.44 19.26 -29.46 -0.57 -3.00 16 23 O -0.13 -2.43 19.26 -29.46 -0.57 -3.00 16 24 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 26 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.40 8.66 8.67 -40.82 -0.35 8.31 16 29 H 0.20 0.64 8.06 -52.49 -0.42 0.22 16 30 H 0.18 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 291.95 15.07 4.40 4.40 Total: -1.00 -30.57 291.95 -9.62 -40.20 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -2.31 Total: 3.00 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -3.21 Total: -3.05 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.16 Total: -54.16 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -1.14 Total: -6.00 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -2.51 Total: -0.18 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.57 -9.62 -40.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060349478.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.664 kcal (2) G-P(sol) polarization free energy of solvation -30.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds