Wall clock time and date at job start Tue Mar 31 2020 05:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.52996 * 109.46999 * 247.45030 * 3 2 1 5 5 N 1.46503 * 109.47116 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99916 * 265.13543 * 5 4 3 7 7 C 1.50698 * 109.46903 * 263.19014 * 6 5 4 8 8 H 1.08008 * 120.00060 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00428 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99805 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00669 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46618 * 59.99756 * 11 9 7 13 13 H 1.48491 * 109.47463 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47148 * 300.00063 * 11 9 7 15 15 C 1.34773 * 119.99912 * 85.12857 * 5 4 3 16 16 O 1.21710 * 120.00546 * 3.85843 * 15 5 4 17 17 C 1.46523 * 119.99969 * 183.85257 * 15 5 4 18 18 C 1.36613 * 125.98096 * 173.42784 * 17 15 5 19 19 C 1.40249 * 106.74131 * 180.02562 * 18 17 15 20 20 C 1.35368 * 107.11579 * 359.97438 * 19 18 17 21 21 Cl 1.73604 * 125.63209 * 179.97438 * 20 19 18 22 22 O 1.33951 * 108.73822 * 0.02562 * 20 19 18 23 23 H 1.08999 * 109.46968 * 127.44759 * 3 2 1 24 24 H 1.08998 * 109.47021 * 7.45138 * 3 2 1 25 25 H 1.08999 * 109.47482 * 60.00044 * 4 3 2 26 26 H 1.08998 * 109.47322 * 299.99923 * 4 3 2 27 27 H 1.08997 * 109.47080 * 23.19086 * 6 5 4 28 28 H 1.08998 * 109.47318 * 143.19074 * 6 5 4 29 29 H 0.97003 * 120.00347 * 180.02562 * 10 9 7 30 30 H 1.08006 * 126.62756 * 0.26259 * 18 17 15 31 31 H 1.07997 * 126.44333 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.5541 1.3322 5 7 4.5828 0.5553 1.3320 6 6 5.3163 -0.5704 1.9159 7 6 5.7132 -0.2321 3.3297 8 1 5.4462 0.7259 3.7511 9 6 6.4182 -1.1450 4.0851 10 7 6.7438 -2.3113 3.5719 11 14 6.9096 -0.7260 5.8379 12 1 5.6908 -0.4589 6.6432 13 1 7.6532 -1.8669 6.4298 14 1 7.7749 0.4809 5.8343 15 6 5.2557 1.5920 0.7945 16 8 4.6484 2.5588 0.3728 17 6 6.7184 1.5552 0.7180 18 6 7.5125 2.4721 0.0894 19 6 8.8374 2.0469 0.2650 20 6 8.7961 0.9017 0.9856 21 17 10.1732 -0.0343 1.4769 22 8 7.5172 0.6093 1.2560 23 1 2.9711 0.6257 -0.8159 24 1 2.9718 -1.0182 -0.1333 25 1 2.7547 -0.0710 2.1481 26 1 2.7540 1.5729 1.4655 27 1 4.6806 -1.4559 1.9189 28 1 6.2106 -0.7672 1.3246 29 1 7.2395 -2.9538 4.1034 30 1 7.1838 3.3559 -0.4373 31 1 9.7240 2.5407 -0.1045 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067231113.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:14 Heat of formation + Delta-G solvation = 11.476102 kcal Electronic energy + Delta-G solvation = -19669.517540 eV Core-core repulsion = 16365.557853 eV Total energy + Delta-G solvation = -3303.959687 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.056 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.30408 -39.19119 -36.74148 -36.65383 -35.43804 -32.94211 -32.74949 -31.41250 -29.13142 -27.26923 -24.66442 -23.27711 -21.70325 -21.48752 -19.34278 -17.65794 -17.26085 -16.60452 -16.46710 -15.83514 -15.63215 -14.80689 -14.55901 -14.28551 -13.58818 -13.22007 -13.16162 -12.90370 -12.77193 -12.46825 -12.31301 -12.24694 -11.83382 -11.73149 -11.40726 -11.09630 -10.99847 -10.83244 -10.63961 -10.23057 -9.93345 -9.74863 -9.68961 -8.57326 -8.30214 -7.96614 -6.20388 -4.26076 1.38729 1.52602 2.50243 2.79862 2.89651 3.23237 3.28094 3.29365 3.36369 3.61909 3.88075 4.28728 4.33632 5.03646 5.08919 5.15257 5.22459 5.26203 5.58558 5.73691 5.81783 5.92559 6.01378 6.14640 6.44643 6.48971 7.05124 7.18592 7.33183 7.65220 7.71051 7.95051 7.98377 8.52296 8.78473 9.40449 10.87039 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.013307 B = 0.007148 C = 0.005176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.709096 B = 3916.046448 C = 5408.294855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.221 3.779 3 C -0.046 4.046 4 C 0.126 3.874 5 N -0.584 5.584 6 C 0.231 3.769 7 C -0.536 4.536 8 H 0.059 0.941 9 C 0.074 3.926 10 N -0.885 5.885 11 Si 0.889 3.111 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.275 1.275 15 C 0.600 3.400 16 O -0.547 6.547 17 C -0.037 4.037 18 C -0.137 4.137 19 C -0.202 4.202 20 C 0.047 3.953 21 Cl 0.022 6.978 22 O -0.096 6.096 23 H 0.111 0.889 24 H 0.113 0.887 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.265 0.735 30 H 0.162 0.838 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.508 3.888 -6.566 8.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.097 4.097 3 C -0.088 4.088 4 C 0.001 3.999 5 N -0.312 5.312 6 C 0.112 3.888 7 C -0.574 4.574 8 H 0.077 0.923 9 C -0.130 4.130 10 N -0.523 5.523 11 Si 0.717 3.283 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.201 1.201 15 C 0.388 3.612 16 O -0.429 6.429 17 C -0.091 4.091 18 C -0.158 4.158 19 C -0.223 4.223 20 C -0.033 4.033 21 Cl 0.050 6.950 22 O 0.011 5.989 23 H 0.129 0.871 24 H 0.131 0.869 25 H 0.113 0.887 26 H 0.103 0.897 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.179 0.821 31 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.581 3.805 -6.496 7.958 hybrid contribution 1.221 -0.022 1.168 1.690 sum 3.802 3.783 -5.327 7.559 Atomic orbital electron populations 1.81186 1.13032 1.09465 1.08819 1.29039 0.95043 0.92649 0.92971 1.19778 0.81487 1.05477 1.02029 1.21207 0.80597 1.02937 0.95148 1.48205 1.05713 1.21649 1.55681 1.19807 0.92091 0.82874 0.94008 1.21288 1.36605 1.02191 0.97324 0.92304 1.24802 0.95235 0.94761 0.98215 1.69889 1.38680 1.06568 1.37160 0.86687 0.78911 0.78122 0.84625 1.20130 1.21066 1.20063 1.16595 0.83318 0.82904 0.78335 1.90808 1.67246 1.33501 1.51296 1.22065 0.91691 0.91801 1.03535 1.21737 0.91221 1.00580 1.02292 1.21357 0.98785 0.96601 1.05509 1.23016 0.82868 0.95183 1.02238 1.98418 1.32318 1.73352 1.90866 1.84780 1.13532 1.42301 1.58330 0.87119 0.86877 0.88743 0.89719 0.93784 0.92832 0.92495 0.82079 0.82457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.16 18.54 42.15 0.78 -6.38 16 2 C 0.22 3.00 15.43 -20.76 -0.32 2.68 16 3 C -0.05 -0.56 5.99 -29.52 -0.18 -0.73 16 4 C 0.13 1.89 5.32 -4.04 -0.02 1.87 16 5 N -0.58 -10.73 2.49 -176.67 -0.44 -11.17 16 6 C 0.23 4.97 4.75 -5.19 -0.02 4.94 16 7 C -0.54 -13.14 8.39 -34.44 -0.29 -13.43 16 8 H 0.06 1.49 7.81 -52.48 -0.41 1.08 16 9 C 0.07 1.86 5.46 -17.82 -0.10 1.77 16 10 N -0.89 -23.15 13.29 55.43 0.74 -22.41 16 11 Si 0.89 20.20 29.54 -169.99 -5.02 15.18 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 15 C 0.60 11.40 7.54 -12.92 -0.10 11.30 16 16 O -0.55 -10.74 16.50 5.18 0.09 -10.65 16 17 C -0.04 -0.69 6.73 -36.83 -0.25 -0.94 16 18 C -0.14 -2.14 10.62 -39.41 -0.42 -2.56 16 19 C -0.20 -2.93 10.84 -39.85 -0.43 -3.36 16 20 C 0.05 0.81 7.93 29.71 0.24 1.04 16 21 Cl 0.02 0.34 29.30 -51.86 -1.52 -1.18 16 22 O -0.10 -1.92 6.59 4.72 0.03 -1.89 16 23 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 24 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.09 1.39 8.04 -51.93 -0.42 0.98 16 26 H 0.08 1.28 7.52 -51.93 -0.39 0.89 16 27 H 0.04 0.96 8.02 -51.93 -0.42 0.55 16 28 H 0.05 1.24 5.42 -51.93 -0.28 0.95 16 29 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 30 H 0.16 2.15 8.06 -52.48 -0.42 1.73 16 31 H 0.16 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 304.08 15.07 4.58 4.58 Total: -1.00 -28.22 304.08 -5.39 -33.61 By element: Atomic # 1 Polarization: 0.49 SS G_CDS: -2.74 Total: -2.25 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -1.89 Total: 2.58 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 1.08 Total: -39.96 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.12 Total: -12.55 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 17 Polarization: 0.34 SS G_CDS: -1.52 Total: -1.18 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.22 -5.39 -33.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067231113.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.087 kcal (2) G-P(sol) polarization free energy of solvation -28.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds