Wall clock time and date at job start Tue Mar 31 2020 05:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.52996 * 109.46999 * 247.45030 * 3 2 1 5 5 N 1.46503 * 109.47116 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99916 * 265.13543 * 5 4 3 7 7 C 1.50698 * 109.46903 * 263.19014 * 6 5 4 8 8 H 1.08008 * 120.00060 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00428 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99805 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00669 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46618 * 59.99756 * 11 9 7 13 13 H 1.48491 * 109.47463 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47148 * 300.00063 * 11 9 7 15 15 C 1.34773 * 119.99912 * 85.12857 * 5 4 3 16 16 O 1.21710 * 120.00546 * 3.85843 * 15 5 4 17 17 C 1.46523 * 119.99969 * 183.85257 * 15 5 4 18 18 C 1.36613 * 125.98096 * 173.42784 * 17 15 5 19 19 C 1.40249 * 106.74131 * 180.02562 * 18 17 15 20 20 C 1.35368 * 107.11579 * 359.97438 * 19 18 17 21 21 Cl 1.73604 * 125.63209 * 179.97438 * 20 19 18 22 22 O 1.33951 * 108.73822 * 0.02562 * 20 19 18 23 23 H 1.08999 * 109.46968 * 127.44759 * 3 2 1 24 24 H 1.08998 * 109.47021 * 7.45138 * 3 2 1 25 25 H 1.08999 * 109.47482 * 60.00044 * 4 3 2 26 26 H 1.08998 * 109.47322 * 299.99923 * 4 3 2 27 27 H 1.08997 * 109.47080 * 23.19086 * 6 5 4 28 28 H 1.08998 * 109.47318 * 143.19074 * 6 5 4 29 29 H 0.97003 * 120.00347 * 180.02562 * 10 9 7 30 30 H 1.08006 * 126.62756 * 0.26259 * 18 17 15 31 31 H 1.07997 * 126.44333 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.5541 1.3322 5 7 4.5828 0.5553 1.3320 6 6 5.3163 -0.5704 1.9159 7 6 5.7132 -0.2321 3.3297 8 1 5.4462 0.7259 3.7511 9 6 6.4182 -1.1450 4.0851 10 7 6.7438 -2.3113 3.5719 11 14 6.9096 -0.7260 5.8379 12 1 5.6908 -0.4589 6.6432 13 1 7.6532 -1.8669 6.4298 14 1 7.7749 0.4809 5.8343 15 6 5.2557 1.5920 0.7945 16 8 4.6484 2.5588 0.3728 17 6 6.7184 1.5552 0.7180 18 6 7.5125 2.4721 0.0894 19 6 8.8374 2.0469 0.2650 20 6 8.7961 0.9017 0.9856 21 17 10.1732 -0.0343 1.4769 22 8 7.5172 0.6093 1.2560 23 1 2.9711 0.6257 -0.8159 24 1 2.9718 -1.0182 -0.1333 25 1 2.7547 -0.0710 2.1481 26 1 2.7540 1.5729 1.4655 27 1 4.6806 -1.4559 1.9189 28 1 6.2106 -0.7672 1.3246 29 1 7.2395 -2.9538 4.1034 30 1 7.1838 3.3559 -0.4373 31 1 9.7240 2.5407 -0.1045 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067231113.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:14 Heat of formation + Delta-G solvation = -3.728793 kcal Electronic energy + Delta-G solvation = -19670.176874 eV Core-core repulsion = 16365.557853 eV Total energy + Delta-G solvation = -3304.619021 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.056 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.62327 -40.62254 -37.95666 -37.89539 -36.89926 -34.69141 -34.05333 -32.77183 -30.43209 -29.00422 -25.92175 -25.04078 -23.03907 -22.75286 -20.69986 -19.04900 -18.58435 -18.23568 -17.83954 -17.29700 -17.05207 -16.35094 -15.92985 -15.69911 -14.95943 -14.49754 -14.39411 -14.28418 -14.09613 -14.06624 -13.61122 -13.52562 -13.19517 -13.07708 -12.91968 -12.76160 -12.53987 -12.26414 -12.10412 -11.79434 -11.71880 -11.22474 -10.97534 -10.49614 -9.73568 -9.37719 -8.13093 -6.22392 0.03404 0.27488 1.28190 1.41336 1.44155 1.48915 1.63983 1.79358 2.00708 2.23962 2.42763 2.58756 3.15444 3.20505 3.70549 3.92145 4.10350 4.12709 4.48366 4.53205 4.59109 4.80653 4.85684 4.90718 5.02078 5.32661 5.38214 5.64253 5.77146 5.92580 6.12766 6.38651 6.55432 6.84447 7.10497 7.46168 8.92745 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.013307 B = 0.007148 C = 0.005176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.709096 B = 3916.046448 C = 5408.294855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.246 3.754 3 C -0.031 4.031 4 C 0.122 3.878 5 N -0.585 5.585 6 C 0.247 3.753 7 C -0.536 4.536 8 H 0.045 0.955 9 C 0.037 3.963 10 N -0.908 5.908 11 Si 0.932 3.068 12 H -0.274 1.274 13 H -0.282 1.282 14 H -0.278 1.278 15 C 0.599 3.401 16 O -0.558 6.558 17 C -0.074 4.074 18 C -0.120 4.120 19 C -0.179 4.179 20 C 0.024 3.976 21 Cl 0.027 6.973 22 O -0.129 6.129 23 H 0.124 0.876 24 H 0.132 0.868 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.043 0.957 29 H 0.265 0.735 30 H 0.186 0.814 31 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.264 4.741 -7.185 10.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.071 4.071 3 C -0.072 4.072 4 C -0.002 4.002 5 N -0.313 5.313 6 C 0.127 3.873 7 C -0.575 4.575 8 H 0.063 0.937 9 C -0.164 4.164 10 N -0.546 5.546 11 Si 0.758 3.242 12 H -0.199 1.199 13 H -0.207 1.207 14 H -0.204 1.204 15 C 0.388 3.612 16 O -0.440 6.440 17 C -0.127 4.127 18 C -0.140 4.140 19 C -0.199 4.199 20 C -0.056 4.056 21 Cl 0.056 6.944 22 O -0.025 6.025 23 H 0.142 0.858 24 H 0.150 0.850 25 H 0.113 0.887 26 H 0.101 0.899 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.203 0.797 31 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 3.323 4.668 -7.117 9.137 hybrid contribution 1.050 -0.231 1.341 1.719 sum 4.373 4.437 -5.776 8.495 Atomic orbital electron populations 1.81217 1.14275 1.10997 1.10123 1.29134 0.94977 0.91293 0.91698 1.19699 0.80235 1.06648 1.00622 1.21328 0.78862 1.03154 0.96873 1.48097 1.06820 1.20860 1.55531 1.19411 0.91893 0.83530 0.92501 1.21462 1.35996 1.01316 0.98704 0.93678 1.25308 0.95542 0.94856 1.00696 1.69956 1.39539 1.07146 1.38006 0.86017 0.78565 0.77739 0.81857 1.19895 1.20720 1.20376 1.16709 0.83773 0.82678 0.78048 1.90790 1.67680 1.33617 1.51956 1.22223 0.91767 0.93061 1.05635 1.22128 0.91198 1.00164 1.00529 1.21794 0.99633 0.95091 1.03391 1.23482 0.82377 0.96405 1.03290 1.98413 1.31655 1.73445 1.90917 1.84693 1.14808 1.43430 1.59519 0.85846 0.85014 0.88749 0.89876 0.94184 0.93957 0.92616 0.79696 0.78612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.23 18.54 20.01 0.37 -14.86 16 2 C 0.25 6.36 15.43 89.44 1.38 7.74 16 3 C -0.03 -0.69 5.99 28.79 0.17 -0.52 16 4 C 0.12 3.54 5.32 86.38 0.46 4.00 16 5 N -0.58 -21.17 2.49 -831.06 -2.07 -23.23 16 6 C 0.25 10.61 4.75 85.63 0.41 11.01 16 7 C -0.54 -26.35 8.39 25.60 0.21 -26.14 16 8 H 0.04 2.30 7.81 -2.91 -0.02 2.28 16 9 C 0.04 1.88 5.46 84.65 0.46 2.34 16 10 N -0.91 -47.49 13.29 21.45 0.28 -47.21 16 11 Si 0.93 41.14 29.54 68.60 2.03 43.17 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 13 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 14 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 15 C 0.60 22.24 7.54 86.40 0.65 22.89 16 16 O -0.56 -21.19 16.50 -4.38 -0.07 -21.26 16 17 C -0.07 -2.68 6.73 24.05 0.16 -2.51 16 18 C -0.12 -3.43 10.62 22.38 0.24 -3.19 16 19 C -0.18 -4.68 10.84 22.10 0.24 -4.44 16 20 C 0.02 0.79 7.93 67.16 0.53 1.32 16 21 Cl 0.03 0.81 29.30 -2.72 -0.08 0.73 16 22 O -0.13 -5.14 6.59 -6.02 -0.04 -5.18 16 23 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 24 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 25 H 0.09 2.72 8.04 -2.39 -0.02 2.70 16 26 H 0.08 2.45 7.52 -2.39 -0.02 2.43 16 27 H 0.04 1.75 8.02 -2.39 -0.02 1.73 16 28 H 0.04 1.97 5.42 -2.39 -0.01 1.96 16 29 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 30 H 0.19 4.32 8.06 -2.91 -0.02 4.30 16 31 H 0.20 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -59.66 304.08 6.52 -53.15 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: 1.17 Total: 2.19 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 4.92 Total: 12.50 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -1.41 Total: -85.30 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.11 Total: -26.44 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Atomic # 17 Polarization: 0.81 SS G_CDS: -0.08 Total: 0.73 kcal Total: -59.66 6.52 -53.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067231113.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.418 kcal (2) G-P(sol) polarization free energy of solvation -59.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds