Wall clock time and date at job start Tue Mar 31 2020 05:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36009 * 117.00389 * 2 1 4 4 C 1.38065 * 120.00408 * 359.97438 * 3 2 1 5 5 C 1.39827 * 119.86228 * 180.02562 * 4 3 2 6 6 C 1.43203 * 120.05977 * 180.02562 * 5 4 3 7 7 N 5.84055 * 81.26191 * 359.97438 * 2 1 3 8 8 C 1.39764 * 119.87953 * 359.97438 * 5 4 3 9 9 C 1.37752 * 120.01225 * 359.74986 * 8 5 4 10 10 C 1.39002 * 120.13451 * 0.50707 * 9 8 5 11 11 N 1.39442 * 119.93815 * 179.76528 * 10 9 8 12 12 S 1.65606 * 120.00265 * 327.72157 * 11 10 9 13 13 O 1.42098 * 106.39873 * 314.15593 * 12 11 10 14 14 O 1.42096 * 106.40376 * 181.23523 * 12 11 10 15 15 C 1.76204 * 107.21614 * 67.69260 * 12 11 10 16 16 H 1.07994 * 120.00199 * 0.02562 * 15 12 11 17 17 C 1.37882 * 119.99696 * 180.02562 * 15 12 11 18 18 N 1.31517 * 119.99732 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 119.99794 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.47044 * 89.99947 * 19 17 15 21 21 H 1.48505 * 109.46844 * 209.99721 * 19 17 15 22 22 H 1.48499 * 109.47200 * 329.99708 * 19 17 15 23 23 H 1.08997 * 109.47169 * 300.00292 * 1 2 3 24 24 H 1.08999 * 109.46712 * 59.99530 * 1 2 3 25 25 H 1.08994 * 109.47632 * 179.97438 * 1 2 3 26 26 H 1.07991 * 120.06892 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.99527 * 179.97438 * 8 5 4 28 28 H 1.08002 * 119.93363 * 180.25383 * 9 8 5 29 29 H 0.96998 * 120.00015 * 147.71985 * 11 10 9 30 30 H 0.97003 * 119.99168 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2947 2.3698 -0.0005 5 6 1.9327 3.6141 -0.0011 6 6 1.1571 4.8179 -0.0011 7 7 0.5417 5.7728 -0.0026 8 6 3.3288 3.6807 -0.0005 9 6 4.0739 2.5222 0.0057 10 6 3.4403 1.2849 0.0009 11 7 4.1986 0.1147 0.0023 12 16 5.6699 0.0804 -0.7571 13 8 5.4824 0.6983 -2.0229 14 8 6.1700 -1.2407 -0.6036 15 6 6.7517 1.1311 0.1541 16 1 6.3915 1.6459 1.0325 17 6 8.0583 1.2961 -0.2543 18 7 8.4971 0.6688 -1.3237 19 14 9.2055 2.4094 0.7121 20 1 9.8949 1.6178 1.7624 21 1 10.2136 2.9980 -0.2059 22 1 8.4199 3.4975 1.3479 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.2162 2.3147 -0.0014 27 1 3.8235 4.6408 -0.0014 28 1 5.1526 2.5752 0.0103 29 1 3.8644 -0.6792 0.4482 30 1 9.4164 0.7846 -1.6108 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130228610.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:49 Heat of formation + Delta-G solvation = -70.108510 kcal Electronic energy + Delta-G solvation = -19625.005068 eV Core-core repulsion = 16319.551312 eV Total energy + Delta-G solvation = -3305.453755 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.051 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.28016 -37.74165 -36.49040 -35.40860 -34.49970 -34.17719 -33.26285 -30.31704 -29.30815 -27.40442 -26.38421 -23.25501 -22.37468 -19.52341 -18.92453 -17.94170 -17.47509 -16.68704 -16.37646 -15.81953 -15.57490 -14.95681 -14.32905 -14.14165 -13.94504 -13.83659 -13.63258 -13.45433 -12.79065 -12.56471 -12.35756 -12.14524 -11.72159 -11.55111 -11.31012 -11.21157 -11.01944 -10.75553 -10.68681 -10.50994 -10.39544 -10.31466 -9.37060 -8.98830 -8.59305 -7.66299 -6.85407 -5.51084 0.89181 1.47367 1.99282 2.70763 2.99958 3.03436 3.08083 3.12718 3.25094 3.90993 3.96651 3.97351 4.38031 4.49526 4.81105 4.96751 5.09104 5.13401 5.28854 5.40787 5.45191 5.61062 5.86664 5.98069 6.12460 6.28158 6.45398 6.60461 6.81463 7.15630 7.32512 7.53469 7.65874 7.76429 8.71394 10.08602 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.018636 B = 0.006457 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.096602 B = 4335.302856 C = 5488.426769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.311 6.311 3 C 0.082 3.918 4 C -0.136 4.136 5 C -0.042 4.042 6 C 0.270 3.730 7 N -0.438 5.438 8 C -0.059 4.059 9 C -0.146 4.146 10 C 0.211 3.789 11 N -1.059 6.059 12 S 2.698 3.302 13 O -0.986 6.986 14 O -0.993 6.993 15 C -1.024 5.024 16 H 0.112 0.888 17 C 0.135 3.865 18 N -0.838 5.838 19 Si 0.922 3.078 20 H -0.266 1.266 21 H -0.274 1.274 22 H -0.259 1.259 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.099 0.901 26 H 0.136 0.864 27 H 0.139 0.861 28 H 0.179 0.821 29 H 0.419 0.581 30 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.812 1.402 4.650 11.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.034 3.966 4 C -0.158 4.158 5 C -0.047 4.047 6 C -0.045 4.045 7 N -0.113 5.113 8 C -0.081 4.081 9 C -0.167 4.167 10 C 0.110 3.890 11 N -0.799 5.799 12 S 2.798 3.202 13 O -0.976 6.976 14 O -0.983 6.983 15 C -1.157 5.157 16 H 0.130 0.870 17 C -0.085 4.085 18 N -0.467 5.467 19 Si 0.746 3.254 20 H -0.191 1.191 21 H -0.199 1.199 22 H -0.183 1.183 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.118 0.882 26 H 0.154 0.846 27 H 0.157 0.843 28 H 0.196 0.804 29 H 0.253 0.747 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.253 2.162 3.616 12.016 hybrid contribution 0.543 0.224 1.105 1.252 sum -10.711 2.385 4.721 11.946 Atomic orbital electron populations 1.23062 0.78579 1.03970 1.01266 1.86092 1.21067 1.25923 1.89384 1.18509 0.90694 0.84599 1.02842 1.20871 0.99748 0.90222 1.05004 1.15649 0.91719 0.86562 1.10812 1.25680 0.93008 0.92808 0.92979 1.81213 1.09172 1.10747 1.10213 1.20893 0.90830 0.99039 0.97295 1.21822 1.03871 0.89411 1.01584 1.17045 0.87309 0.87354 0.97340 1.54232 1.38759 1.16871 1.70039 1.01238 0.70568 0.74567 0.73790 1.93420 1.84852 1.78250 1.41083 1.93404 1.77196 1.40694 1.87053 1.30538 1.10080 1.47072 1.28049 0.86968 1.24755 0.97327 0.93194 0.93193 1.69886 1.19336 1.36609 1.20843 0.86122 0.79362 0.80151 0.79807 1.19105 1.19886 1.18296 0.92711 0.92611 0.88226 0.84632 0.84337 0.80416 0.74731 0.89554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.17 9.99 -19.77 -0.20 -4.37 16 3 C 0.08 1.21 6.70 -39.15 -0.26 0.95 16 4 C -0.14 -1.70 8.74 -39.05 -0.34 -2.04 16 5 C -0.04 -0.56 5.74 -106.81 -0.61 -1.17 16 6 C 0.27 3.65 15.33 -22.47 -0.34 3.31 16 7 N -0.44 -6.62 18.54 41.84 0.78 -5.85 16 8 C -0.06 -0.83 9.74 -39.19 -0.38 -1.21 16 9 C -0.15 -2.47 8.87 -39.48 -0.35 -2.82 16 10 C 0.21 3.68 6.22 -83.62 -0.52 3.16 16 11 N -1.06 -20.19 5.66 32.51 0.18 -20.01 16 12 S 2.70 66.70 4.62 -107.50 -0.50 66.20 16 13 O -0.99 -26.94 17.41 -57.17 -1.00 -27.94 16 14 O -0.99 -27.45 18.02 -57.17 -1.03 -28.48 16 15 C -1.02 -25.24 7.55 30.60 0.23 -25.01 16 16 H 0.11 2.44 6.92 -52.49 -0.36 2.08 16 17 C 0.13 3.44 5.46 -17.82 -0.10 3.34 16 18 N -0.84 -22.95 13.19 55.43 0.73 -22.22 16 19 Si 0.92 18.85 29.54 -169.99 -5.02 13.83 16 20 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 23 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 24 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 25 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.14 1.30 6.28 -52.49 -0.33 0.97 16 27 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.18 3.30 4.46 -52.49 -0.23 3.07 16 29 H 0.42 6.93 8.61 -34.47 -0.30 6.63 16 30 H 0.29 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 288.53 15.07 4.35 4.35 Total: -1.00 -32.88 288.53 -5.39 -38.27 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -2.00 Total: 6.49 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -1.69 Total: -20.28 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 1.69 Total: -48.07 kcal Atomic # 8 Polarization: -58.56 SS G_CDS: -2.22 Total: -60.79 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.02 Total: 13.83 kcal Atomic # 16 Polarization: 66.70 SS G_CDS: -0.50 Total: 66.20 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.88 -5.39 -38.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130228610.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.835 kcal (2) G-P(sol) polarization free energy of solvation -32.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds