Wall clock time and date at job start Tue Mar 31 2020 05:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86800 * 120.00025 * 2 1 4 4 H 1.48500 * 109.46803 * 269.99846 * 3 2 1 5 5 H 1.48494 * 109.46891 * 29.99962 * 3 2 1 6 6 H 1.48497 * 109.47004 * 149.99976 * 3 2 1 7 7 C 1.40058 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99731 * 180.02562 * 7 2 1 9 9 C 1.46372 * 120.00105 * 359.97438 * 7 2 1 10 10 O 1.21691 * 119.99773 * 0.02562 * 9 7 2 11 11 N 1.34775 * 120.00147 * 180.02562 * 9 7 2 12 12 C 1.46500 * 119.99831 * 180.02562 * 11 9 7 13 13 C 1.50703 * 109.46777 * 180.02562 * 12 11 9 14 14 O 1.21286 * 119.99964 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99896 * 180.02562 * 13 12 11 16 16 C 1.39971 * 120.00205 * 185.27244 * 15 13 12 17 17 C 1.38868 * 120.05909 * 213.58289 * 16 15 13 18 18 C 1.38105 * 119.94035 * 180.22597 * 17 16 15 19 19 C 1.38383 * 120.05645 * 359.48119 * 18 17 16 20 20 Cl 1.73606 * 119.94041 * 180.29397 * 19 18 17 21 21 C 1.38381 * 120.11918 * 0.26737 * 19 18 17 22 22 C 1.38111 * 120.05418 * 359.97438 * 21 19 18 23 23 H 0.96997 * 120.00261 * 0.02562 * 1 2 3 24 24 H 0.96995 * 119.99626 * 0.02562 * 11 9 7 25 25 H 1.08993 * 109.47465 * 60.00103 * 12 11 9 26 26 H 1.09001 * 109.46836 * 299.99693 * 12 11 9 27 27 H 0.97005 * 120.00136 * 5.26924 * 15 13 12 28 28 H 1.07999 * 120.02596 * 359.97438 * 17 16 15 29 29 H 1.08001 * 119.97035 * 179.74747 * 18 17 16 30 30 H 1.07999 * 119.97502 * 180.02562 * 21 19 18 31 31 H 1.08001 * 120.02252 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0463 -1.4001 5 1 1.4381 2.6526 0.7000 6 1 3.5382 1.4401 0.7000 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0001 9 6 1.2751 -2.4806 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9490 -3.6478 -0.0005 12 6 1.2165 -4.9165 -0.0011 13 6 2.1958 -6.0619 -0.0004 14 8 3.3882 -5.8402 0.0001 15 7 1.7466 -7.3326 -0.0012 16 6 2.6512 -8.3948 0.1109 17 6 2.4000 -9.5942 -0.5424 18 6 3.2918 -10.6423 -0.4264 19 6 4.4403 -10.4944 0.3314 20 17 5.5631 -11.8113 0.4690 21 6 4.6956 -9.2985 0.9792 22 6 3.8044 -8.2490 0.8704 23 1 -0.4850 0.8400 -0.0004 24 1 2.9190 -3.6477 -0.0002 25 1 0.5902 -4.9740 -0.8913 26 1 0.5895 -4.9744 0.8887 27 1 0.7963 -7.5110 -0.0795 28 1 1.5060 -9.7086 -1.1374 29 1 3.0949 -11.5767 -0.9309 30 1 5.5928 -9.1855 1.5696 31 1 4.0044 -7.3157 1.3759 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153644096.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:12 Heat of formation + Delta-G solvation = -54.404846 kcal Electronic energy + Delta-G solvation = -18400.405406 eV Core-core repulsion = 15093.588906 eV Total energy + Delta-G solvation = -3306.816500 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.056 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.69386 -38.83463 -37.15512 -36.64256 -34.78056 -33.20815 -32.26109 -31.33025 -29.92607 -27.60967 -25.53108 -23.39627 -22.61577 -20.60971 -19.68919 -18.29213 -17.74014 -16.82131 -16.42329 -15.78253 -15.29754 -14.98519 -14.87822 -14.30728 -13.94663 -13.80296 -13.71654 -13.20933 -13.06631 -12.55416 -12.19053 -12.11212 -11.75981 -11.52388 -11.19643 -11.08802 -10.95922 -10.49653 -10.36580 -10.26556 -9.86954 -9.28747 -8.89064 -8.28766 -7.73534 -7.66849 -6.24120 -4.68560 0.83171 1.04459 1.91977 2.51317 2.83734 3.13586 3.20581 3.24668 3.44481 4.08968 4.48576 4.52608 4.61644 4.73052 4.86157 4.98914 5.14207 5.25277 5.61476 5.65281 5.72691 5.85950 5.99844 6.00287 6.03137 6.17073 6.64659 7.15023 7.40750 7.87250 7.92961 8.03277 8.28618 8.98422 9.44007 10.52536 10.70504 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.047014 B = 0.002745 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.429612 B =10197.710004 C =10699.258117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.910 3.090 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.070 0.930 9 C 0.556 3.444 10 O -0.583 6.583 11 N -0.757 5.757 12 C 0.117 3.883 13 C 0.512 3.488 14 O -0.513 6.513 15 N -0.678 5.678 16 C 0.162 3.838 17 C -0.138 4.138 18 C -0.090 4.090 19 C -0.056 4.056 20 Cl -0.077 7.077 21 C -0.088 4.088 22 C -0.111 4.111 23 H 0.269 0.731 24 H 0.393 0.607 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.415 0.585 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.577 -20.554 0.542 21.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.735 3.265 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.577 4.577 8 H 0.088 0.912 9 C 0.361 3.639 10 O -0.466 6.466 11 N -0.417 5.417 12 C -0.011 4.011 13 C 0.300 3.700 14 O -0.387 6.387 15 N -0.324 5.324 16 C 0.067 3.933 17 C -0.159 4.159 18 C -0.110 4.110 19 C -0.083 4.083 20 Cl -0.048 7.048 21 C -0.108 4.108 22 C -0.131 4.131 23 H 0.080 0.920 24 H 0.228 0.772 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.252 0.748 28 H 0.154 0.846 29 H 0.153 0.847 30 H 0.154 0.846 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.422 -20.301 0.570 21.021 hybrid contribution 0.482 0.466 -0.091 0.677 sum 5.904 -19.836 0.479 20.701 Atomic orbital electron populations 1.70011 1.07082 1.27405 1.35156 1.25718 0.94660 1.00371 0.92533 0.86326 0.80174 0.81123 0.78898 1.19684 1.20430 1.18813 1.20859 0.93775 0.89034 1.54082 0.91177 1.18253 0.87169 0.82118 0.76402 1.90599 1.14004 1.86723 1.55269 1.46050 1.09656 1.03054 1.82964 1.20660 0.93229 0.83804 1.03440 1.21423 0.90571 0.83709 0.74256 1.90687 1.16965 1.84118 1.46899 1.43661 1.10437 1.04725 1.73547 1.17874 0.91969 0.87955 0.95518 1.20868 1.01407 0.92652 1.00933 1.20802 0.92488 0.99382 0.98293 1.20878 0.93579 0.90317 1.03575 1.98361 1.61527 1.47731 1.97207 1.20956 0.99934 0.90890 0.98982 1.21201 0.93823 0.99706 0.98413 0.92030 0.77202 0.89828 0.89678 0.74794 0.84624 0.84660 0.84616 0.83647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.70 11.83 55.55 0.66 -22.04 16 2 C 0.09 2.41 5.50 -17.37 -0.10 2.32 16 3 Si 0.91 20.06 29.56 -169.99 -5.02 15.04 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.54 -15.27 9.54 -35.63 -0.34 -15.61 16 8 H 0.07 1.84 7.85 -52.49 -0.41 1.43 16 9 C 0.56 15.61 7.75 -12.99 -0.10 15.51 16 10 O -0.58 -18.26 15.02 5.20 0.08 -18.19 16 11 N -0.76 -17.05 5.52 -62.90 -0.35 -17.39 16 12 C 0.12 2.05 6.16 -5.19 -0.03 2.02 16 13 C 0.51 7.68 7.64 -10.98 -0.08 7.60 16 14 O -0.51 -9.16 13.36 5.55 0.07 -9.08 16 15 N -0.68 -7.50 5.34 -9.85 -0.05 -7.55 16 16 C 0.16 1.83 6.28 -83.68 -0.53 1.30 16 17 C -0.14 -1.25 9.96 -39.40 -0.39 -1.64 16 18 C -0.09 -0.81 9.82 -39.58 -0.39 -1.19 16 19 C -0.06 -0.56 6.32 -39.48 -0.25 -0.81 16 20 Cl -0.08 -0.71 28.95 -51.86 -1.50 -2.22 16 21 C -0.09 -0.94 9.82 -39.58 -0.39 -1.33 16 22 C -0.11 -1.35 8.65 -39.40 -0.34 -1.69 16 23 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 24 H 0.39 8.50 7.42 -40.82 -0.30 8.20 16 25 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 26 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 27 H 0.42 3.22 8.82 -40.82 -0.36 2.86 16 28 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 29 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 31 H 0.15 1.98 6.42 -52.49 -0.34 1.64 16 LS Contribution 297.59 15.07 4.48 4.48 Total: -1.00 -34.76 297.59 -7.23 -41.99 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -2.66 Total: 8.48 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: -2.94 Total: 6.47 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: 0.26 Total: -46.99 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: 0.15 Total: -27.27 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -34.76 -7.23 -41.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153644096.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.412 kcal (2) G-P(sol) polarization free energy of solvation -34.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds