Wall clock time and date at job start Tue Mar 31 2020 05:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76200 * 103.00051 * 2 1 4 4 C 1.39106 * 120.00406 * 359.92959 * 3 2 1 5 5 C 1.38204 * 120.22532 * 179.97438 * 4 3 2 6 6 C 1.38011 * 120.24756 * 0.04945 * 5 4 3 7 7 C 1.39682 * 120.00372 * 359.97438 * 6 5 4 8 8 C 1.47717 * 120.11654 * 179.97438 * 7 6 5 9 9 O 1.21469 * 119.99935 * 180.02562 * 8 7 6 10 10 N 1.34778 * 119.99629 * 0.02562 * 8 7 6 11 11 C 1.33330 * 119.99961 * 180.02562 * 10 8 7 12 12 H 1.08007 * 119.99685 * 0.02562 * 11 10 8 13 13 C 1.46780 * 120.00237 * 180.02562 * 11 10 8 14 14 N 1.29316 * 119.99781 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00145 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46841 * 89.99999 * 15 13 11 17 17 H 1.48501 * 109.47418 * 209.99960 * 15 13 11 18 18 H 1.48502 * 109.47482 * 330.00281 * 15 13 11 19 19 C 1.38676 * 120.00111 * 179.97438 * 3 2 1 20 20 N 1.48013 * 120.12102 * 0.24941 * 19 3 2 21 21 O 1.31698 * 120.00023 * 269.72172 * 20 19 3 22 22 O 1.31706 * 119.99880 * 89.73123 * 20 19 3 23 23 H 1.08999 * 109.47310 * 300.00258 * 1 2 3 24 24 H 1.09005 * 109.46526 * 60.00015 * 1 2 3 25 25 H 1.08996 * 109.47426 * 180.02562 * 1 2 3 26 26 H 1.07996 * 119.88524 * 0.02696 * 4 3 2 27 27 H 1.08009 * 119.87693 * 180.02562 * 5 4 3 28 28 H 1.07998 * 119.99914 * 179.97438 * 6 5 4 29 29 H 0.96994 * 120.00171 * 0.02562 * 10 8 7 30 30 H 0.97003 * 119.99972 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1931 2.6656 -0.0015 5 6 1.4988 4.0134 -0.0010 6 6 2.8153 4.4277 0.0000 7 6 3.8447 3.4835 0.0010 8 6 5.2546 3.9242 0.0015 9 8 6.1481 3.1013 0.0019 10 7 5.5496 5.2393 0.0015 11 6 6.8221 5.6371 0.0014 12 1 7.6166 4.9054 0.0009 13 6 7.1434 7.0693 0.0019 14 7 6.1921 7.9453 0.0030 15 14 8.9263 7.6266 0.0025 16 1 9.3990 7.7747 -1.3974 17 1 9.0369 8.9313 0.7030 18 1 9.7604 6.6167 0.7023 19 6 3.5366 2.1223 0.0005 20 7 4.6212 1.1152 -0.0045 21 8 5.1085 0.6665 1.1338 22 8 5.0992 0.6678 -1.1473 23 1 -0.3634 0.5139 0.8899 24 1 -0.3632 0.5139 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 0.1610 2.3479 -0.0022 27 1 0.7045 4.7453 -0.0017 28 1 3.0496 5.4820 0.0000 29 1 4.8361 5.8963 0.0015 30 1 6.4044 8.8918 0.0030 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188217034.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:05 Heat of formation + Delta-G solvation = 28.284369 kcal Electronic energy + Delta-G solvation = -19458.425335 eV Core-core repulsion = 16157.238215 eV Total energy + Delta-G solvation = -3301.187120 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.051 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.98090 -37.96826 -37.45145 -34.47911 -33.48494 -32.39113 -31.56029 -31.36334 -29.20761 -26.38499 -25.15255 -23.50784 -22.02423 -20.13838 -18.91463 -18.11402 -17.43210 -17.38496 -16.07409 -15.98596 -15.30122 -15.08970 -14.32904 -14.23061 -14.20481 -13.84515 -13.82162 -13.46750 -12.76685 -12.73235 -12.26333 -12.18196 -11.79402 -11.45424 -10.78479 -10.63167 -10.61175 -10.56660 -10.22514 -10.08690 -9.91642 -9.78734 -9.15903 -8.73527 -8.68490 -7.69376 -7.21290 -3.99758 0.62530 0.66263 0.84238 1.11996 1.82747 2.09959 2.81959 2.96616 3.01655 3.12799 3.72904 3.97900 4.31423 4.71271 4.75096 4.75291 4.83076 4.85340 5.06900 5.16504 5.29990 5.35406 5.62331 5.89010 6.08848 6.25602 6.35607 6.64622 6.69397 7.46314 7.50827 7.97828 8.66902 8.96874 9.73021 9.92035 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.028922 B = 0.004890 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.875994 B = 5724.186434 C = 6538.667057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.096 6.096 3 C -0.044 4.044 4 C -0.152 4.152 5 C -0.062 4.062 6 C -0.119 4.119 7 C -0.022 4.022 8 C 0.397 3.603 9 O -0.594 6.594 10 N -0.489 5.489 11 C -0.301 4.301 12 H 0.124 0.876 13 C 0.035 3.965 14 N -0.827 5.827 15 Si 0.945 3.055 16 H -0.267 1.267 17 H -0.276 1.276 18 H -0.257 1.257 19 C 0.039 3.961 20 N 0.004 4.996 21 O -0.145 6.145 22 O -0.146 6.146 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.112 0.888 26 H 0.139 0.861 27 H 0.140 0.860 28 H 0.145 0.855 29 H 0.392 0.608 30 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.041 -3.072 0.011 14.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.147 5.853 3 C -0.158 4.158 4 C -0.177 4.177 5 C -0.082 4.082 6 C -0.141 4.141 7 C -0.030 4.030 8 C 0.190 3.810 9 O -0.483 6.483 10 N -0.116 5.116 11 C -0.433 4.433 12 H 0.142 0.858 13 C -0.180 4.180 14 N -0.459 5.459 15 Si 0.769 3.231 16 H -0.192 1.192 17 H -0.201 1.201 18 H -0.180 1.180 19 C -0.052 4.052 20 N 0.500 4.500 21 O -0.350 6.350 22 O -0.351 6.351 23 H 0.107 0.893 24 H 0.107 0.893 25 H 0.131 0.869 26 H 0.156 0.844 27 H 0.158 0.842 28 H 0.163 0.837 29 H 0.226 0.774 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.335 -3.874 0.018 13.886 hybrid contribution -0.294 1.722 -0.010 1.747 sum -13.629 -2.151 0.007 13.798 Atomic orbital electron populations 1.23740 0.94134 1.07509 1.06016 1.86103 1.07010 1.00498 1.91690 1.21200 0.92860 0.98838 1.02941 1.20958 0.97400 0.92583 1.06802 1.21145 0.96593 0.95217 0.95283 1.21340 0.91552 0.99573 1.01684 1.20092 0.96843 0.89366 0.96703 1.17178 0.86643 0.83746 0.93401 1.90711 1.46462 1.51056 1.60111 1.40992 1.09035 1.05789 1.55787 1.21139 0.85035 0.90932 1.46169 0.85832 1.27178 1.01383 0.94848 0.94613 1.68629 1.35649 1.03770 1.37810 0.85593 0.79641 0.78398 0.79512 1.19237 1.20057 1.18037 1.19276 0.83918 0.87065 1.14966 1.49716 0.99359 0.98665 1.02287 1.96206 1.61759 1.61352 1.15675 1.96208 1.62354 1.61478 1.15042 0.89287 0.89282 0.86920 0.84363 0.84186 0.83744 0.77360 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.15 101.05 0.92 -0.25 16 2 S -0.10 -1.40 21.97 -107.50 -2.36 -3.76 16 3 C -0.04 -0.74 6.11 -39.10 -0.24 -0.98 16 4 C -0.15 -1.93 9.36 -39.27 -0.37 -2.30 16 5 C -0.06 -0.77 10.02 -39.68 -0.40 -1.17 16 6 C -0.12 -1.91 9.54 -39.13 -0.37 -2.28 16 7 C -0.02 -0.47 5.87 -104.99 -0.62 -1.09 16 8 C 0.40 10.22 7.70 -12.39 -0.10 10.12 16 9 O -0.59 -17.81 14.07 -7.57 -0.11 -17.92 16 10 N -0.49 -12.04 5.12 -10.61 -0.05 -12.09 16 11 C -0.30 -7.84 9.92 -13.45 -0.13 -7.98 16 12 H 0.12 3.46 7.19 -52.48 -0.38 3.08 16 13 C 0.04 0.82 5.69 -15.16 -0.09 0.74 16 14 N -0.83 -19.05 13.09 56.00 0.73 -18.32 16 15 Si 0.94 18.37 29.64 -169.99 -5.04 13.33 16 16 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 17 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 18 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 19 C 0.04 0.82 6.28 -79.29 -0.50 0.33 16 20 N 0.00 0.11 2.25 34.28 0.08 0.19 16 21 O -0.14 -3.67 19.71 -34.66 -0.68 -4.36 16 22 O -0.15 -3.71 19.74 -34.41 -0.68 -4.39 16 23 H 0.09 0.61 7.75 -51.92 -0.40 0.21 16 24 H 0.09 0.61 7.74 -51.92 -0.40 0.21 16 25 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.14 1.22 5.86 -52.49 -0.31 0.92 16 27 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 28 H 0.14 2.11 6.40 -52.49 -0.34 1.78 16 29 H 0.39 8.68 6.01 -40.82 -0.25 8.44 16 30 H 0.29 6.14 8.26 -40.82 -0.34 5.81 16 LS Contribution 291.96 15.07 4.40 4.40 Total: -1.00 -32.85 291.96 -7.64 -40.50 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -2.05 Total: 7.28 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -1.88 Total: -4.87 kcal Atomic # 7 Polarization: -30.98 SS G_CDS: 0.76 Total: -30.22 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -1.47 Total: -26.66 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.04 Total: 13.33 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -2.36 Total: -3.76 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.85 -7.64 -40.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188217034.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.784 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds