Wall clock time and date at job start Tue Mar 31 2020 05:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86796 * 119.99541 * 2 1 4 4 H 1.48501 * 109.46776 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47246 * 299.99600 * 3 2 1 6 6 H 1.48500 * 109.47358 * 59.99848 * 3 2 1 7 7 C 1.38942 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99944 * 180.02562 * 7 2 1 9 9 N 1.37094 * 120.00294 * 0.02562 * 7 2 1 10 10 C 1.34782 * 120.00388 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99538 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00177 * 179.97438 * 10 9 7 13 13 C 1.53002 * 109.47137 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.47137 * 179.97438 * 13 12 10 15 15 O 1.21218 * 120.00276 * 0.02562 * 14 13 12 16 16 C 1.47482 * 119.99924 * 179.97438 * 14 13 12 17 17 C 1.39586 * 119.72646 * 180.02562 * 16 14 13 18 18 C 1.38495 * 119.05727 * 179.97438 * 17 16 14 19 19 C 1.38775 * 118.49119 * 359.97438 * 18 17 16 20 20 Cl 1.73602 * 120.31824 * 179.97438 * 19 18 17 21 21 C 1.38831 * 119.36409 * 359.97438 * 19 18 17 22 22 N 1.31404 * 120.90299 * 0.02672 * 21 19 18 23 23 H 0.97001 * 119.99902 * 0.02562 * 1 2 3 24 24 H 0.97003 * 120.00376 * 359.97438 * 9 7 2 25 25 H 1.09005 * 109.47136 * 60.00006 * 12 10 9 26 26 H 1.08998 * 109.47211 * 299.99807 * 12 10 9 27 27 H 1.08997 * 109.47269 * 59.99696 * 13 12 10 28 28 H 1.09003 * 109.46908 * 300.00460 * 13 12 10 29 29 H 1.08000 * 120.47423 * 0.25124 * 17 16 14 30 30 H 1.07998 * 120.75186 * 180.02562 * 18 17 16 31 31 H 1.08001 * 119.54987 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3964 -1.2126 6 1 1.8892 2.3965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2104 -3.5578 0.0001 12 6 1.2439 -4.8629 0.0011 13 6 2.2382 -6.0259 0.0016 14 6 1.4847 -7.3309 0.0029 15 8 0.2725 -7.3310 0.0028 16 6 2.2221 -8.6082 0.0030 17 6 1.5185 -9.8137 0.0036 18 6 2.2249 -11.0049 0.0031 19 6 3.6117 -10.9521 0.0016 20 17 4.5444 -12.4163 0.0016 21 6 4.2460 -9.7172 0.0000 22 7 3.5513 -8.6017 0.0004 23 1 -0.4850 0.8401 -0.0004 24 1 0.3535 -2.3907 0.0005 25 1 0.6169 -4.9209 -0.8886 26 1 0.6176 -4.9205 0.8914 27 1 2.8649 -5.9677 0.8915 28 1 2.8649 -5.9684 -0.8884 29 1 0.4385 -9.8175 -0.0001 30 1 1.7083 -11.9533 0.0032 31 1 5.3250 -9.6726 -0.0008 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347627635.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:44 Heat of formation + Delta-G solvation = -52.540846 kcal Electronic energy + Delta-G solvation = -18226.929137 eV Core-core repulsion = 14920.193467 eV Total energy + Delta-G solvation = -3306.735671 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.056 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.90565 -39.15472 -38.00277 -37.12187 -34.03407 -33.19643 -32.22674 -31.61180 -31.09667 -26.73591 -24.92807 -24.19577 -23.17440 -20.28407 -18.97624 -17.90188 -17.66280 -17.14098 -16.68504 -15.73422 -15.71588 -14.94502 -14.63867 -14.54824 -14.11509 -13.83768 -13.74328 -13.73150 -13.01044 -12.46222 -12.33456 -12.15336 -11.79216 -11.54810 -11.30684 -11.10164 -10.65444 -10.39852 -10.37919 -10.31868 -10.19407 -9.65021 -9.50290 -9.42692 -8.37543 -7.94567 -6.39230 -3.80149 -0.03063 0.68129 1.46795 2.00446 3.18147 3.28514 3.34196 3.35761 3.50162 3.94429 3.99007 4.17977 4.21206 4.37535 4.60807 4.89212 5.17811 5.19051 5.27358 5.33104 5.35977 5.62846 5.71091 5.92380 6.06137 6.37263 6.42522 6.49501 7.11744 7.49405 7.57815 8.08427 8.62935 9.19668 9.57516 10.08283 10.78505 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.048032 B = 0.002673 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.800735 B =10474.440689 C =11036.795074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.562 5.562 10 C 0.440 3.560 11 O -0.597 6.597 12 C -0.125 4.125 13 C -0.129 4.129 14 C 0.411 3.589 15 O -0.440 6.440 16 C 0.056 3.944 17 C -0.105 4.105 18 C -0.077 4.077 19 C -0.070 4.070 20 Cl -0.048 7.048 21 C 0.113 3.887 22 N -0.420 5.420 23 H 0.271 0.729 24 H 0.394 0.606 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.157 0.843 30 H 0.152 0.848 31 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.290 -23.430 0.002 23.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.430 4.430 8 H 0.122 0.878 9 N -0.198 5.198 10 C 0.226 3.774 11 O -0.483 6.483 12 C -0.165 4.165 13 C -0.166 4.166 14 C 0.287 3.713 15 O -0.312 6.312 16 C -0.080 4.080 17 C -0.126 4.126 18 C -0.103 4.103 19 C -0.100 4.100 20 Cl -0.020 7.020 21 C -0.049 4.049 22 N -0.131 5.131 23 H 0.081 0.919 24 H 0.227 0.773 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.174 0.826 30 H 0.169 0.831 31 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.778 -22.544 0.001 22.858 hybrid contribution -0.492 -0.233 0.002 0.544 sum 3.287 -22.777 0.002 23.012 Atomic orbital electron populations 1.69632 1.05951 1.28056 1.50551 1.25284 0.95639 0.99776 0.97337 0.85800 0.79706 0.81136 0.77693 1.19200 1.20758 1.20763 1.19777 0.93425 0.82305 1.47459 0.87825 1.41917 1.09331 1.04688 1.63815 1.19873 0.88211 0.84987 0.84280 1.90521 1.13905 1.87474 1.56419 1.21334 0.98247 0.93137 1.03821 1.21548 0.98910 0.89504 1.06640 1.22661 0.88451 0.89631 0.70592 1.90534 1.15715 1.89500 1.35466 1.22096 0.90540 0.95767 0.99641 1.22368 1.02695 0.91222 0.96275 1.21570 0.91896 0.99887 0.96939 1.22481 0.93370 0.89715 1.04388 1.98404 1.72682 1.34331 1.96546 1.22978 1.01238 0.85254 0.95405 1.67898 1.07193 1.29629 1.08380 0.91911 0.77291 0.89959 0.89966 0.87172 0.87160 0.82584 0.83062 0.80923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.90 13.05 55.50 0.72 -24.17 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.30 -8.48 9.68 -14.94 -0.14 -8.62 16 8 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 9 N -0.56 -14.57 5.29 -10.96 -0.06 -14.62 16 10 C 0.44 10.51 7.78 -10.98 -0.09 10.43 16 11 O -0.60 -16.09 15.56 5.54 0.09 -16.01 16 12 C -0.12 -2.27 4.99 -27.88 -0.14 -2.41 16 13 C -0.13 -2.05 4.47 -27.88 -0.12 -2.17 16 14 C 0.41 5.75 7.13 -30.54 -0.22 5.53 16 15 O -0.44 -6.78 15.95 5.61 0.09 -6.69 16 16 C 0.06 0.66 6.73 -83.13 -0.56 0.11 16 17 C -0.11 -0.99 9.63 -38.98 -0.38 -1.37 16 18 C -0.08 -0.58 9.97 -39.29 -0.39 -0.97 16 19 C -0.07 -0.57 6.36 -39.16 -0.25 -0.82 16 20 Cl -0.05 -0.34 28.99 -51.86 -1.50 -1.84 16 21 C 0.11 1.04 10.98 -17.52 -0.19 0.85 16 22 N -0.42 -5.01 9.79 -9.85 -0.10 -5.11 16 23 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 24 H 0.39 9.83 7.90 -40.82 -0.32 9.51 16 25 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 26 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 27 H 0.11 1.79 8.10 -51.93 -0.42 1.37 16 28 H 0.11 1.80 8.10 -51.93 -0.42 1.38 16 29 H 0.16 1.28 7.64 -52.49 -0.40 0.88 16 30 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 31 H 0.17 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 302.22 15.07 4.55 4.55 Total: -1.00 -32.03 302.22 -6.56 -38.59 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -2.76 Total: 8.08 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -2.58 Total: 1.03 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.57 Total: -43.90 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: 0.18 Total: -22.70 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.50 Total: -1.84 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.03 -6.56 -38.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347627635.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.949 kcal (2) G-P(sol) polarization free energy of solvation -32.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds