Wall clock time and date at job start Tue Mar 31 2020 05:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 119.99948 * 2 1 4 4 H 1.48503 * 109.47110 * 270.00063 * 3 2 1 5 5 H 1.48498 * 109.47496 * 30.00354 * 3 2 1 6 6 H 1.48499 * 109.46892 * 150.00438 * 3 2 1 7 7 C 1.37876 * 119.99450 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99590 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00378 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47377 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00417 * 180.02562 * 10 9 7 12 12 O 1.21356 * 119.99691 * 359.97438 * 11 10 9 13 13 C 1.49344 * 119.99982 * 180.02562 * 11 10 9 14 14 O 1.21376 * 120.00320 * 359.97438 * 13 11 10 15 15 N 1.34776 * 119.99982 * 180.02562 * 13 11 10 16 16 C 1.39766 * 120.00195 * 185.27306 * 15 13 11 17 17 C 1.38923 * 120.06332 * 213.61000 * 16 15 13 18 18 C 1.38089 * 119.93698 * 180.22962 * 17 16 15 19 19 C 1.38404 * 120.05855 * 359.50028 * 18 17 16 20 20 Cl 1.73597 * 119.93242 * 180.27282 * 19 18 17 21 21 C 1.38394 * 120.12697 * 0.24657 * 19 18 17 22 22 C 1.38088 * 120.06489 * 0.02562 * 21 19 18 23 23 H 0.97000 * 119.99800 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47543 * 59.99689 * 9 7 2 25 25 H 1.09001 * 109.46851 * 299.99642 * 9 7 2 26 26 H 0.97005 * 119.99343 * 359.97438 * 10 9 7 27 27 H 0.97005 * 119.99780 * 5.26856 * 15 13 11 28 28 H 1.07999 * 120.03231 * 359.97438 * 17 16 15 29 29 H 1.08001 * 119.96956 * 179.77074 * 18 17 16 30 30 H 1.07998 * 119.96666 * 180.02562 * 21 19 18 31 31 H 1.08000 * 120.03130 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8834 -0.0011 12 8 0.5605 -5.1051 -0.0011 13 6 2.7241 -6.0185 -0.0005 14 8 3.9174 -5.7968 0.0000 15 7 2.2749 -7.2892 -0.0015 16 6 3.1781 -8.3499 0.1103 17 6 2.9272 -9.5495 -0.5439 18 6 3.8190 -10.5974 -0.4278 19 6 4.9671 -10.4498 0.3310 20 17 6.0895 -11.7669 0.4689 21 6 5.2222 -9.2541 0.9794 22 6 4.3311 -8.2048 0.8715 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8902 25 1 0.6247 -2.5570 0.8897 26 1 3.1566 -3.4354 -0.0009 27 1 1.3246 -7.4676 -0.0798 28 1 2.0334 -9.6639 -1.1393 29 1 3.6226 -11.5315 -0.9331 30 1 6.1191 -9.1417 1.5705 31 1 4.5310 -7.2718 1.3774 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355349628.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:14 Heat of formation + Delta-G solvation = -73.679316 kcal Electronic energy + Delta-G solvation = -18392.059510 eV Core-core repulsion = 15084.407207 eV Total energy + Delta-G solvation = -3307.652303 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.056 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.16743 -40.46970 -39.29244 -37.53788 -36.60115 -35.70711 -34.37245 -32.15244 -30.75789 -29.65561 -26.48634 -24.58993 -24.03645 -22.83392 -21.43444 -20.22509 -18.84998 -18.30636 -17.87921 -17.19278 -17.17592 -16.91019 -16.26085 -15.89613 -15.41693 -15.24047 -14.86016 -14.55541 -14.46223 -14.08473 -13.91422 -13.48670 -13.01543 -13.00700 -12.75804 -12.73112 -12.52692 -12.22782 -11.83761 -11.53770 -11.33781 -10.85153 -10.75674 -10.10238 -10.07375 -9.22978 -8.32114 -6.48117 -0.24617 0.24234 0.45151 1.10107 1.25999 1.44929 1.45463 1.57381 2.02973 2.35428 2.59623 2.65827 3.03534 3.39405 3.76215 3.85712 4.16936 4.27267 4.37147 4.80271 4.93459 4.96638 5.10331 5.16705 5.18563 5.19498 5.24570 5.49747 5.69638 5.77098 5.90552 6.43111 6.56560 6.69519 6.97393 7.24948 8.79488 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.045661 B = 0.002774 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.062055 B =10090.296642 C =10609.061828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.011 3.989 3 Si 0.981 3.019 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.562 4.562 8 H 0.080 0.920 9 C 0.263 3.737 10 N -0.672 5.672 11 C 0.494 3.506 12 O -0.556 6.556 13 C 0.522 3.478 14 O -0.514 6.514 15 N -0.634 5.634 16 C 0.133 3.867 17 C -0.121 4.121 18 C -0.086 4.086 19 C -0.056 4.056 20 Cl -0.067 7.067 21 C -0.092 4.092 22 C -0.125 4.125 23 H 0.271 0.729 24 H 0.006 0.994 25 H 0.006 0.994 26 H 0.413 0.587 27 H 0.433 0.567 28 H 0.165 0.835 29 H 0.164 0.836 30 H 0.149 0.851 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.224 -21.886 0.109 23.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.190 4.190 3 Si 0.805 3.195 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.600 4.600 8 H 0.098 0.902 9 C 0.141 3.859 10 N -0.322 5.322 11 C 0.274 3.726 12 O -0.436 6.436 13 C 0.304 3.696 14 O -0.388 6.388 15 N -0.281 5.281 16 C 0.039 3.961 17 C -0.141 4.141 18 C -0.105 4.105 19 C -0.083 4.083 20 Cl -0.038 7.038 21 C -0.112 4.112 22 C -0.145 4.145 23 H 0.080 0.920 24 H 0.024 0.976 25 H 0.024 0.976 26 H 0.250 0.750 27 H 0.273 0.727 28 H 0.182 0.818 29 H 0.182 0.818 30 H 0.167 0.833 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.134 -21.793 0.139 23.630 hybrid contribution 0.045 0.984 0.058 0.987 sum 9.178 -20.809 0.196 22.744 Atomic orbital electron populations 1.70096 1.07959 1.28738 1.49521 1.25950 0.95797 1.03538 0.93695 0.85199 0.78481 0.77215 0.78629 1.19604 1.20686 1.18350 1.21566 0.94285 0.90578 1.53546 0.90220 1.18840 0.88310 0.83059 0.95673 1.46162 1.12480 1.04887 1.68675 1.20152 0.88381 0.84813 0.79278 1.90725 1.17035 1.84965 1.50860 1.20097 0.88193 0.84335 0.76998 1.90759 1.16395 1.84782 1.46908 1.43082 1.12116 1.03109 1.69825 1.18059 0.92015 0.88274 0.97733 1.21169 1.02122 0.91152 0.99642 1.21153 0.91572 1.00188 0.97545 1.21082 0.93972 0.90291 1.02950 1.98373 1.61259 1.47042 1.97122 1.21052 1.00084 0.90742 0.99274 1.21158 0.94511 0.99856 0.99011 0.92035 0.97580 0.97605 0.75009 0.72670 0.81775 0.81808 0.83347 0.85222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.69 13.29 21.45 0.28 -53.41 16 2 C 0.01 0.58 5.46 84.65 0.46 1.04 16 3 Si 0.98 41.69 29.54 68.60 2.03 43.71 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 6 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 7 C -0.56 -29.99 9.28 25.60 0.24 -29.75 16 8 H 0.08 3.95 7.60 -2.91 -0.02 3.93 16 9 C 0.26 13.76 5.43 85.63 0.46 14.23 16 10 N -0.67 -28.52 5.54 -468.26 -2.59 -31.12 16 11 C 0.49 19.10 7.89 87.24 0.69 19.78 16 12 O -0.56 -23.96 16.48 -3.27 -0.05 -24.01 16 13 C 0.52 16.36 7.62 87.24 0.66 17.03 16 14 O -0.51 -17.34 14.16 -3.33 -0.05 -17.38 16 15 N -0.63 -15.33 5.32 -304.82 -1.62 -16.95 16 16 C 0.13 2.88 6.28 38.20 0.24 3.12 16 17 C -0.12 -1.89 9.96 22.40 0.22 -1.66 16 18 C -0.09 -1.23 9.82 22.27 0.22 -1.01 16 19 C -0.06 -0.95 6.32 22.35 0.14 -0.81 16 20 Cl -0.07 -1.04 28.95 -2.72 -0.08 -1.12 16 21 C -0.09 -1.76 9.82 22.27 0.22 -1.54 16 22 C -0.13 -2.86 8.65 22.40 0.19 -2.67 16 23 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 24 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 25 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.41 16.00 7.79 -92.70 -0.72 15.28 16 27 H 0.43 8.96 8.30 -92.70 -0.77 8.19 16 28 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 29 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 30 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 31 H 0.13 3.36 6.42 -2.91 -0.02 3.34 16 Total: -1.00 -64.39 300.00 1.38 -63.01 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -0.29 Total: 19.51 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: 3.75 Total: 17.77 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -3.93 Total: -101.48 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -0.10 Total: -41.40 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.71 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.12 kcal Total: -64.39 1.38 -63.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355349628.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.668 kcal (2) G-P(sol) polarization free energy of solvation -64.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds