Wall clock time and date at job start Tue Mar 31 2020 05:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00123 * 2 1 4 4 H 1.48500 * 109.46901 * 270.00147 * 3 2 1 5 5 H 1.48496 * 109.47660 * 149.99733 * 3 2 1 6 6 H 1.48503 * 109.46998 * 29.99367 * 3 2 1 7 7 C 1.37881 * 120.00196 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00000 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99891 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47085 * 179.97438 * 9 7 2 11 11 S 1.81400 * 109.47221 * 179.97438 * 10 9 7 12 12 C 1.81406 * 102.99981 * 174.92413 * 11 10 9 13 13 H 1.08997 * 110.26543 * 304.53457 * 12 11 10 14 14 C 1.54346 * 110.30189 * 66.60833 * 12 11 10 15 15 C 1.54343 * 102.39031 * 145.27917 * 14 12 11 16 16 C 1.51377 * 105.17302 * 333.64590 * 15 14 12 17 17 C 1.38504 * 130.37565 * 197.16581 * 16 15 14 18 18 C 1.38090 * 120.23073 * 180.02562 * 17 16 15 19 19 C 1.38370 * 119.92068 * 359.97438 * 18 17 16 20 20 Cl 1.73596 * 120.04325 * 179.97438 * 19 18 17 21 21 C 1.38219 * 119.90675 * 0.02562 * 19 18 17 22 22 C 1.38232 * 109.75177 * 17.19017 * 16 15 14 23 23 H 0.97004 * 120.00287 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47082 * 300.00209 * 9 7 2 25 25 H 1.09000 * 109.47144 * 59.99708 * 9 7 2 26 26 H 1.08995 * 109.47078 * 300.00078 * 10 9 7 27 27 H 1.09000 * 109.47241 * 59.99922 * 10 9 7 28 28 H 1.08997 * 110.82018 * 263.50630 * 14 12 11 29 29 H 1.08995 * 110.82147 * 26.85699 * 14 12 11 30 30 H 1.09002 * 110.30476 * 92.57154 * 15 14 12 31 31 H 1.09000 * 110.30116 * 214.72556 * 15 14 12 32 32 H 1.08001 * 119.88786 * 0.02562 * 17 16 15 33 33 H 1.07997 * 120.03668 * 180.02562 * 18 17 16 34 34 H 1.08002 * 119.89403 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 3.5467 1.4403 0.7000 6 1 1.4465 2.6527 0.6999 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6364 0.0023 11 16 5.8356 -2.6364 0.0022 12 6 6.2437 -4.3969 0.1600 13 1 5.7639 -4.8179 1.0435 14 6 5.8042 -5.1640 -1.1051 15 6 6.9055 -6.2367 -1.2413 16 6 8.1243 -5.6408 -0.5699 17 6 9.4602 -5.9961 -0.6565 18 6 10.4131 -5.2980 0.0585 19 6 10.0330 -4.2392 0.8642 20 17 11.2283 -3.3597 1.7650 21 6 8.7002 -3.8835 0.9516 22 6 7.7439 -4.5835 0.2353 23 1 -0.4851 0.8401 -0.0004 24 1 3.8752 -0.6803 -0.8888 25 1 3.8745 -0.6799 0.8911 26 1 3.6579 -3.1497 0.8924 27 1 3.6586 -3.1509 -0.8875 28 1 4.8284 -5.6269 -0.9581 29 1 5.7917 -4.5049 -1.9731 30 1 6.6050 -7.1538 -0.7345 31 1 7.1122 -6.4352 -2.2930 32 1 9.7576 -6.8222 -1.2855 33 1 11.4539 -5.5775 -0.0117 34 1 8.4037 -3.0574 1.5809 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359051952.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:41 Heat of formation + Delta-G solvation = -0.362079 kcal Electronic energy + Delta-G solvation = -16595.547704 eV Core-core repulsion = 13837.367889 eV Total energy + Delta-G solvation = -2758.179815 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 282.054 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.32267 -37.03634 -35.44674 -33.73555 -31.71508 -31.26053 -29.16773 -27.58290 -25.51705 -23.05157 -21.49402 -21.17297 -20.58551 -17.08728 -16.88596 -16.45976 -15.81826 -15.32796 -14.77882 -14.33205 -14.04181 -13.80466 -13.56118 -13.47178 -13.07661 -12.75312 -12.36657 -12.06598 -11.79957 -11.75110 -11.60593 -11.44077 -11.18005 -10.99005 -10.90952 -10.32371 -10.07580 -9.90426 -9.56483 -9.20098 -9.05000 -8.61957 -8.61201 -7.31393 -6.12195 -4.12281 0.87712 1.02085 1.93322 2.06537 3.02414 3.29087 3.36560 3.39103 3.42006 4.16511 4.23036 4.40188 4.70139 4.76146 4.92034 4.98853 5.03978 5.22007 5.28725 5.39399 5.48109 5.64759 5.67492 5.79940 5.85255 5.97252 6.01287 6.01879 6.04839 6.34004 6.51338 6.54322 7.09114 7.21524 7.64320 8.41097 8.89280 9.48665 11.00510 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.023420 B = 0.003762 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.260677 B = 7440.626510 C = 8463.683338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.263 1.263 6 H -0.286 1.286 7 C -0.521 4.521 8 H 0.074 0.926 9 C 0.003 3.997 10 C -0.052 4.052 11 S -0.277 6.277 12 C -0.021 4.021 13 H 0.102 0.898 14 C -0.116 4.116 15 C -0.079 4.079 16 C -0.083 4.083 17 C -0.099 4.099 18 C -0.108 4.108 19 C -0.037 4.037 20 Cl -0.071 7.071 21 C -0.082 4.082 22 C -0.058 4.058 23 H 0.265 0.735 24 H 0.021 0.979 25 H 0.026 0.974 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.290 -13.640 -0.565 24.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.188 1.188 6 H -0.212 1.212 7 C -0.561 4.561 8 H 0.092 0.908 9 C -0.036 4.036 10 C -0.200 4.200 11 S -0.045 6.045 12 C -0.149 4.149 13 H 0.120 0.880 14 C -0.156 4.156 15 C -0.117 4.117 16 C -0.085 4.085 17 C -0.117 4.117 18 C -0.127 4.127 19 C -0.063 4.063 20 Cl -0.042 7.042 21 C -0.102 4.102 22 C -0.060 4.060 23 H 0.075 0.925 24 H 0.039 0.961 25 H 0.044 0.956 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 20.907 -12.540 -0.540 24.385 hybrid contribution -0.367 0.029 0.268 0.455 sum 20.539 -12.511 -0.272 24.051 Atomic orbital electron populations 1.69894 1.06275 1.27135 1.50474 1.24958 0.94731 0.99162 0.94213 0.86797 0.80497 0.83465 0.78772 1.20072 1.18780 1.21178 1.20954 0.88457 0.94735 1.51923 0.90825 1.19369 0.97124 0.89600 0.97546 1.23490 0.87943 1.04506 1.04030 1.86992 1.12625 1.07719 1.97154 1.22567 0.93773 0.96827 1.01725 0.88017 1.22768 0.98623 0.97104 0.97070 1.21088 0.91400 0.98450 1.00807 1.20699 0.94461 0.96147 0.97148 1.20517 0.91122 1.00204 0.99889 1.20927 1.00256 0.94898 0.96651 1.20696 0.89994 0.96685 0.98938 1.98369 1.56439 1.75530 1.73868 1.20573 0.90077 0.99937 0.99583 1.19902 0.93431 0.95753 0.96881 0.92517 0.96071 0.95570 0.90795 0.90629 0.89823 0.89190 0.89764 0.90044 0.85153 0.84817 0.84434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.52 -14.60 9.66 -34.44 -0.33 -14.93 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.77 16 9 C 0.00 0.06 4.05 -27.88 -0.11 -0.05 16 10 C -0.05 -1.01 5.74 37.16 0.21 -0.80 16 11 S -0.28 -4.74 20.85 -107.50 -2.24 -6.98 16 12 C -0.02 -0.27 3.38 -26.85 -0.09 -0.36 16 13 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 14 C -0.12 -1.30 6.46 -25.32 -0.16 -1.46 16 15 C -0.08 -0.72 6.77 -26.85 -0.18 -0.90 16 16 C -0.08 -0.89 6.14 -104.19 -0.64 -1.52 16 17 C -0.10 -0.91 10.04 -39.54 -0.40 -1.31 16 18 C -0.11 -1.04 9.83 -39.59 -0.39 -1.43 16 19 C -0.04 -0.42 6.32 -39.54 -0.25 -0.67 16 20 Cl -0.07 -0.76 28.96 -51.86 -1.50 -2.26 16 21 C -0.08 -1.04 9.53 -39.50 -0.38 -1.42 16 22 C -0.06 -0.74 5.61 -104.21 -0.58 -1.32 16 23 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 24 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 25 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 26 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 27 H 0.08 1.42 8.14 -51.92 -0.42 1.00 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.09 1.10 7.88 -51.93 -0.41 0.69 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 33 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.14 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 312.96 15.07 4.72 4.72 Total: -1.00 -30.12 312.96 -10.89 -41.01 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -4.57 Total: -2.71 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: -3.40 Total: -24.21 kcal Atomic # 7 Polarization: -27.36 SS G_CDS: 0.77 Total: -26.59 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Atomic # 16 Polarization: -4.74 SS G_CDS: -2.24 Total: -6.98 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.50 Total: -2.26 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.12 -10.89 -41.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359051952.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.649 kcal (2) G-P(sol) polarization free energy of solvation -30.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds