Wall clock time and date at job start Tue Mar 31 2020 05:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00085 * 2 1 4 4 H 1.48501 * 109.47130 * 239.99924 * 3 2 1 5 5 H 1.48495 * 109.47258 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47240 * 120.00116 * 3 2 1 7 7 C 1.37874 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00205 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00225 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47728 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.47557 * 180.02562 * 10 9 7 12 12 C 1.81403 * 102.99850 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46717 * 179.97438 * 12 11 10 14 14 C 1.32575 * 119.99475 * 113.77731 * 13 12 11 15 15 C 1.47802 * 120.00389 * 352.06942 * 14 13 12 16 16 C 1.39546 * 120.13129 * 321.74415 * 15 14 13 17 17 C 1.37943 * 119.87205 * 179.76505 * 16 15 14 18 18 C 1.38468 * 120.12665 * 0.50777 * 17 16 15 19 19 Cl 1.73598 * 119.86805 * 179.76681 * 18 17 16 20 20 C 1.38465 * 120.25947 * 359.73826 * 18 17 16 21 21 C 1.37950 * 120.12829 * 0.02562 * 20 18 17 22 22 H 0.97001 * 119.99916 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.47119 * 60.00105 * 9 7 2 24 24 H 1.08996 * 109.47400 * 300.00169 * 9 7 2 25 25 H 1.08996 * 109.46949 * 59.99631 * 10 9 7 26 26 H 1.09003 * 109.47194 * 299.99943 * 10 9 7 27 27 H 1.09001 * 109.47243 * 59.99965 * 12 11 10 28 28 H 1.09004 * 109.46939 * 299.99615 * 12 11 10 29 29 H 1.07996 * 119.99921 * 293.77618 * 13 12 11 30 30 H 1.08003 * 119.99385 * 172.07553 * 14 13 12 31 31 H 1.08006 * 120.06179 * 359.97438 * 16 15 14 32 32 H 1.08000 * 119.93506 * 180.22704 * 17 16 15 33 33 H 1.07998 * 119.93415 * 179.97438 * 20 18 17 34 34 H 1.07998 * 120.06449 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 16 1.3382 -5.2331 -0.0026 12 6 2.6649 -6.4702 -0.0033 13 6 2.0632 -7.8519 -0.0033 14 6 2.2227 -8.6442 -1.0543 15 6 2.8358 -8.1167 -2.2913 16 6 2.5460 -6.8204 -2.7191 17 6 3.1250 -6.3317 -3.8718 18 6 3.9841 -7.1285 -4.6098 19 17 4.7042 -6.5088 -6.0627 20 6 4.2714 -8.4173 -4.1930 21 6 3.7021 -8.9150 -3.0393 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.8725 -3.6047 0.8876 26 1 2.8712 -3.6040 -0.8923 27 1 3.2811 -6.3427 0.8867 28 1 3.2810 -6.3418 -0.8933 29 1 1.5022 -8.1966 0.8527 30 1 1.9044 -9.6752 -1.0064 31 1 1.8723 -6.1998 -2.1469 32 1 2.9042 -5.3274 -4.2019 33 1 4.9418 -9.0343 -4.7728 34 1 3.9272 -9.9203 -2.7149 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000479532937.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:17 Heat of formation + Delta-G solvation = 17.625454 kcal Electronic energy + Delta-G solvation = -16409.136982 eV Core-core repulsion = 13651.737165 eV Total energy + Delta-G solvation = -2757.399817 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 282.054 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.62260 -36.77982 -35.15928 -33.70815 -31.35549 -30.88677 -30.13458 -27.38136 -25.23483 -22.86003 -22.70602 -21.18585 -19.35205 -17.08056 -16.53619 -16.21371 -15.69089 -15.37905 -14.78376 -14.52719 -14.09069 -13.90888 -13.57719 -13.45205 -13.10582 -12.66771 -12.42873 -11.93598 -11.69371 -11.55398 -11.50570 -11.13804 -11.02084 -10.89012 -10.66577 -10.22176 -10.01966 -9.68441 -9.39725 -9.13987 -9.09818 -8.43523 -8.26614 -7.22465 -6.07540 -4.12399 0.66978 1.17880 1.74946 2.01745 2.61402 3.16046 3.29644 3.34497 3.36888 3.57050 4.40638 4.52843 4.70353 4.75061 4.82056 5.05359 5.19028 5.28069 5.29111 5.47097 5.61063 5.70920 5.86748 5.94832 5.98736 6.13969 6.15595 6.22300 6.38842 6.57575 6.68616 6.71386 7.53592 7.61889 7.88140 8.25269 8.92247 9.51738 11.03149 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.015400 B = 0.003995 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.691371 B = 7006.344207 C = 8530.129029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.062 4.062 11 S -0.276 6.276 12 C -0.086 4.086 13 C -0.107 4.107 14 C -0.121 4.121 15 C -0.055 4.055 16 C -0.103 4.103 17 C -0.109 4.109 18 C -0.035 4.035 19 Cl -0.076 7.076 20 C -0.117 4.117 21 C -0.101 4.101 22 H 0.263 0.737 23 H 0.026 0.974 24 H 0.026 0.974 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.158 0.842 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.580 -19.081 -6.142 21.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.209 4.209 11 S -0.045 6.045 12 C -0.233 4.233 13 C -0.126 4.126 14 C -0.142 4.142 15 C -0.055 4.055 16 C -0.122 4.122 17 C -0.127 4.127 18 C -0.062 4.062 19 Cl -0.047 7.047 20 C -0.135 4.135 21 C -0.119 4.119 22 H 0.073 0.927 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.105 0.895 28 H 0.112 0.888 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.175 0.825 32 H 0.155 0.845 33 H 0.149 0.851 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.387 -19.032 -6.237 21.022 hybrid contribution 1.840 1.181 -0.114 2.189 sum 8.226 -17.851 -6.351 20.656 Atomic orbital electron populations 1.69958 1.06073 1.27013 1.49841 1.24996 0.94882 0.99268 0.94983 0.86590 0.79546 0.82793 0.78695 1.20129 1.21138 1.20146 1.21047 0.92959 0.90247 1.52004 0.92518 1.18903 0.93368 0.89220 0.98563 1.23745 1.01469 0.92418 1.03294 1.87059 1.17059 1.03172 1.97166 1.22864 0.99700 0.94857 1.05874 1.22856 0.97664 0.93221 0.98890 1.21624 1.01167 0.99599 0.91846 1.19194 0.97102 0.93901 0.95307 1.22143 0.99329 0.95265 0.95458 1.21144 0.96387 1.00422 0.94772 1.21065 0.99519 0.95039 0.90534 1.98369 1.82488 1.87507 1.36359 1.20928 1.01182 0.94033 0.97405 1.21190 0.96764 0.99855 0.94106 0.92697 0.95516 0.95518 0.91284 0.91293 0.89498 0.88821 0.85523 0.85452 0.82491 0.84488 0.85119 0.85110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.04 0.98 4.98 -27.89 -0.14 0.84 16 10 C -0.06 -1.26 5.88 37.16 0.22 -1.04 16 11 S -0.28 -4.84 19.96 -107.50 -2.15 -6.98 16 12 C -0.09 -1.16 5.37 36.01 0.19 -0.96 16 13 C -0.11 -1.20 9.46 -36.21 -0.34 -1.54 16 14 C -0.12 -1.22 9.79 -37.58 -0.37 -1.59 16 15 C -0.05 -0.62 5.16 -105.01 -0.54 -1.16 16 16 C -0.10 -1.34 7.30 -39.20 -0.29 -1.62 16 17 C -0.11 -1.38 9.81 -39.60 -0.39 -1.77 16 18 C -0.03 -0.41 6.32 -39.41 -0.25 -0.66 16 19 Cl -0.08 -0.85 28.95 -51.86 -1.50 -2.35 16 20 C -0.12 -1.18 9.81 -39.60 -0.39 -1.57 16 21 C -0.10 -0.98 9.78 -39.20 -0.38 -1.36 16 22 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 26 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 27 H 0.09 1.11 8.14 -51.92 -0.42 0.69 16 28 H 0.09 1.27 4.75 -51.92 -0.25 1.02 16 29 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.13 0.99 8.06 -52.48 -0.42 0.56 16 31 H 0.16 2.26 4.84 -52.48 -0.25 2.01 16 32 H 0.14 1.71 8.06 -52.49 -0.42 1.28 16 33 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 317.93 15.07 4.79 4.79 Total: -1.00 -29.33 317.93 -10.50 -39.82 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -4.27 Total: -0.23 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: -3.09 Total: -25.62 kcal Atomic # 7 Polarization: -26.45 SS G_CDS: 0.74 Total: -25.72 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -4.84 SS G_CDS: -2.15 Total: -6.98 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.50 Total: -2.35 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.33 -10.50 -39.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000479532937.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.448 kcal (2) G-P(sol) polarization free energy of solvation -29.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds