Wall clock time and date at job start Tue Mar 31 2020 05:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00170 * 2 1 4 4 H 1.48502 * 109.46765 * 269.99983 * 3 2 1 5 5 H 1.48498 * 109.47018 * 29.99773 * 3 2 1 6 6 H 1.48504 * 109.46922 * 150.00035 * 3 2 1 7 7 C 1.37882 * 119.99694 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00042 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99653 * 180.02562 * 7 2 1 10 10 C 1.53008 * 109.47154 * 180.02562 * 9 7 2 11 11 S 1.81396 * 109.47181 * 179.97438 * 10 9 7 12 12 C 1.81396 * 102.99856 * 174.93934 * 11 10 9 13 13 H 1.09008 * 110.26973 * 308.49554 * 12 11 10 14 14 C 1.54344 * 110.30327 * 70.56442 * 12 11 10 15 15 C 1.54491 * 102.32369 * 145.21108 * 14 12 11 16 16 C 1.51372 * 105.22203 * 333.77107 * 15 14 12 17 17 C 1.38472 * 130.38225 * 197.09720 * 16 15 14 18 18 C 1.38221 * 120.20944 * 180.02562 * 17 16 15 19 19 Cl 1.73590 * 120.05114 * 180.02562 * 18 17 16 20 20 C 1.38376 * 119.89960 * 359.97438 * 18 17 16 21 21 C 1.38074 * 119.92359 * 359.97438 * 20 18 17 22 22 C 1.38227 * 109.75530 * 17.11734 * 16 15 14 23 23 H 0.97000 * 119.99901 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47366 * 60.00268 * 9 7 2 25 25 H 1.09004 * 109.47628 * 299.99514 * 9 7 2 26 26 H 1.08993 * 109.46760 * 300.00359 * 10 9 7 27 27 H 1.08996 * 109.46889 * 59.99824 * 10 9 7 28 28 H 1.08992 * 110.82632 * 263.50169 * 14 12 11 29 29 H 1.09000 * 110.81860 * 27.05567 * 14 12 11 30 30 H 1.08999 * 110.34453 * 214.80063 * 15 14 12 31 31 H 1.09006 * 110.22233 * 92.68008 * 15 14 12 32 32 H 1.08007 * 119.89809 * 0.02562 * 17 16 15 33 33 H 1.08004 * 120.03410 * 179.97438 * 20 18 17 34 34 H 1.08004 * 119.88354 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6367 0.0010 11 16 5.8355 -2.6367 0.0009 12 6 6.2435 -4.3973 0.1567 13 1 5.7083 -4.8359 0.9990 14 6 5.8946 -5.1453 -1.1475 15 6 7.0123 -6.2089 -1.2267 16 6 8.1781 -5.6181 -0.4630 17 6 9.5188 -5.9643 -0.4635 18 6 10.4161 -5.2724 0.3282 19 17 12.0960 -5.7096 0.3239 20 6 9.9733 -4.2301 1.1233 21 6 8.6368 -3.8836 1.1235 22 6 7.7364 -4.5771 0.3319 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.6802 0.8911 25 1 3.8753 -0.6806 -0.8889 26 1 3.6578 -3.1507 0.8906 27 1 3.6585 -3.1503 -0.8892 28 1 4.9143 -5.6159 -1.0739 29 1 5.9394 -4.4725 -2.0039 30 1 7.2921 -6.3880 -2.2648 31 1 6.6838 -7.1363 -0.7574 32 1 9.8646 -6.7776 -1.0844 33 1 10.6725 -3.6883 1.7431 34 1 8.2920 -3.0697 1.7441 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795384499.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:38 Heat of formation + Delta-G solvation = -0.671379 kcal Electronic energy + Delta-G solvation = -16533.881363 eV Core-core repulsion = 13775.688136 eV Total energy + Delta-G solvation = -2758.193227 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 282.054 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.32246 -37.09166 -35.45741 -33.74280 -31.71375 -31.27088 -29.15689 -27.60301 -25.51925 -23.04601 -21.49898 -21.20817 -20.56839 -17.07107 -16.89076 -16.47002 -15.77992 -15.50514 -14.69590 -14.32619 -14.03998 -13.77110 -13.59240 -13.47394 -13.12535 -12.77097 -12.27249 -12.09769 -11.89173 -11.71617 -11.62707 -11.51400 -11.19526 -11.01703 -10.90725 -10.33202 -10.08252 -9.89075 -9.57465 -9.21643 -9.08219 -8.62122 -8.61942 -7.32386 -6.12987 -4.13116 0.83620 1.06177 1.86507 2.05076 3.01501 3.28205 3.35687 3.39602 3.40735 4.15966 4.26341 4.39249 4.67220 4.77085 4.90703 4.98893 5.07093 5.21114 5.28428 5.41629 5.41991 5.66383 5.68111 5.83948 5.84953 5.96337 5.98043 6.02874 6.05120 6.35117 6.50399 6.54883 7.07932 7.20417 7.63460 8.40313 8.88551 9.47772 10.99730 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.036488 B = 0.003235 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.182897 B = 8652.491749 C = 9242.557439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.521 4.521 8 H 0.074 0.926 9 C 0.003 3.997 10 C -0.052 4.052 11 S -0.276 6.276 12 C -0.022 4.022 13 H 0.102 0.898 14 C -0.115 4.115 15 C -0.079 4.079 16 C -0.076 4.076 17 C -0.102 4.102 18 C -0.032 4.032 19 Cl -0.074 7.074 20 C -0.112 4.112 21 C -0.079 4.079 22 C -0.065 4.065 23 H 0.265 0.735 24 H 0.026 0.974 25 H 0.021 0.979 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.242 -13.348 -0.094 24.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.561 4.561 8 H 0.092 0.908 9 C -0.036 4.036 10 C -0.200 4.200 11 S -0.045 6.045 12 C -0.150 4.150 13 H 0.120 0.880 14 C -0.155 4.155 15 C -0.117 4.117 16 C -0.078 4.078 17 C -0.121 4.121 18 C -0.059 4.059 19 Cl -0.045 7.045 20 C -0.131 4.131 21 C -0.098 4.098 22 C -0.066 4.066 23 H 0.075 0.925 24 H 0.044 0.956 25 H 0.039 0.961 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.149 0.851 33 H 0.153 0.847 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 20.901 -12.370 -0.154 24.288 hybrid contribution -0.321 -0.126 0.166 0.383 sum 20.580 -12.497 0.012 24.077 Atomic orbital electron populations 1.69898 1.06276 1.27137 1.50458 1.24967 0.94740 0.99179 0.94224 0.86789 0.80477 0.83447 0.78766 1.20077 1.21190 1.18780 1.20955 0.88466 0.94735 1.51924 0.90830 1.19367 0.97121 0.89586 0.97524 1.23495 0.87976 1.04511 1.04032 1.86955 1.12595 1.07777 1.97147 1.22579 0.94364 0.96798 1.01295 0.88034 1.22797 0.98688 0.97251 0.96740 1.21112 0.91862 0.98579 1.00113 1.20491 0.93470 0.96388 0.97448 1.20388 0.91336 1.00593 0.99782 1.20734 0.85193 0.98895 1.01076 1.98364 1.15721 1.92559 1.97869 1.20939 0.95965 0.96703 0.99471 1.20704 0.91536 0.99180 0.98340 1.20124 0.93813 0.95923 0.96766 0.92515 0.95578 0.96087 0.90801 0.90640 0.89804 0.89181 0.90033 0.89744 0.85103 0.84670 0.84465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.27 13.96 55.43 0.77 -26.49 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 21.55 27.47 -169.99 -4.67 16.89 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -14.53 9.66 -34.44 -0.33 -14.86 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.00 0.07 4.05 -27.88 -0.11 -0.04 16 10 C -0.05 -1.01 5.84 37.16 0.22 -0.79 16 11 S -0.28 -4.64 20.83 -107.50 -2.24 -6.88 16 12 C -0.02 -0.29 3.36 -26.85 -0.09 -0.38 16 13 H 0.10 1.27 8.14 -51.92 -0.42 0.85 16 14 C -0.12 -1.28 6.57 -25.24 -0.17 -1.44 16 15 C -0.08 -0.72 6.77 -26.77 -0.18 -0.90 16 16 C -0.08 -0.83 6.14 -104.21 -0.64 -1.47 16 17 C -0.10 -1.04 9.82 -39.50 -0.39 -1.43 16 18 C -0.03 -0.34 6.32 -39.54 -0.25 -0.59 16 19 Cl -0.07 -0.70 28.96 -51.86 -1.50 -2.20 16 20 C -0.11 -1.18 9.83 -39.59 -0.39 -1.57 16 21 C -0.08 -0.92 9.74 -39.54 -0.39 -1.31 16 22 C -0.07 -0.80 5.61 -104.19 -0.59 -1.39 16 23 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 24 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 25 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 26 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.09 1.09 7.88 -51.93 -0.41 0.68 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 33 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 34 H 0.14 1.57 8.06 -52.48 -0.42 1.15 16 LS Contribution 313.13 15.07 4.72 4.72 Total: -1.00 -29.77 313.13 -10.89 -40.66 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -4.57 Total: -2.47 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -3.40 Total: -24.22 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.77 Total: -26.49 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.89 kcal Atomic # 16 Polarization: -4.64 SS G_CDS: -2.24 Total: -6.88 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.77 -10.89 -40.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795384499.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.987 kcal (2) G-P(sol) polarization free energy of solvation -29.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds