Wall clock time and date at job start Tue Mar 31 2020 05:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.31153 * 120.00609 * 2 1 4 4 Cl 1.73598 * 119.99893 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99605 * 179.97438 * 2 1 3 6 6 S 1.81404 * 109.47218 * 285.00354 * 5 2 1 7 7 C 1.81402 * 103.00017 * 180.02562 * 6 5 2 8 8 C 1.50700 * 109.46997 * 179.97438 * 7 6 5 9 9 C 1.38634 * 119.74914 * 269.72604 * 8 7 6 10 10 C 1.37619 * 120.24942 * 179.72155 * 9 8 7 11 11 C 1.40717 * 119.73953 * 0.57349 * 10 9 8 12 12 C 1.41400 * 120.23665 * 179.68462 * 11 10 9 13 13 H 1.08007 * 119.99684 * 155.31480 * 12 11 10 14 14 C 1.39939 * 120.00333 * 335.30310 * 12 11 10 15 15 N 1.30826 * 120.00025 * 342.23859 * 14 12 11 16 16 Si 1.86800 * 120.00117 * 162.23840 * 14 12 11 17 17 H 1.48494 * 109.47119 * 94.66408 * 16 14 12 18 18 H 1.48501 * 109.47377 * 214.66748 * 16 14 12 19 19 H 1.48501 * 109.47174 * 334.66670 * 16 14 12 20 20 C 1.40711 * 119.51509 * 359.69926 * 11 10 9 21 21 C 1.37617 * 119.74404 * 0.02562 * 20 11 10 22 22 H 1.08996 * 109.47574 * 270.00639 * 1 2 3 23 23 H 1.09007 * 109.46833 * 29.99620 * 1 2 3 24 24 H 1.08998 * 109.47697 * 149.99731 * 1 2 3 25 25 H 1.08003 * 120.00292 * 179.97438 * 3 2 1 26 26 H 1.08994 * 109.47432 * 165.00030 * 5 2 1 27 27 H 1.09001 * 109.47223 * 45.00296 * 5 2 1 28 28 H 1.08994 * 109.46882 * 300.00097 * 7 6 5 29 29 H 1.08996 * 109.46948 * 59.99840 * 7 6 5 30 30 H 1.08008 * 119.87481 * 359.97438 * 9 8 7 31 31 H 1.07995 * 120.12746 * 180.27730 * 10 9 8 32 32 H 0.97003 * 119.99697 * 179.97438 * 15 14 12 33 33 H 1.07997 * 120.12552 * 179.97438 * 20 11 10 34 34 H 1.07995 * 119.87428 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1358 0.0000 4 17 1.2950 2.6392 0.0007 5 6 2.2604 -1.3052 0.0006 6 16 2.1793 -2.0495 1.6529 7 6 3.1269 -3.5838 1.4563 8 6 3.1532 -4.3292 2.7658 9 6 4.1751 -4.0917 3.6721 10 6 4.2061 -4.7624 4.8733 11 6 3.2020 -5.7011 5.1748 12 6 3.2273 -6.4011 6.4032 13 1 2.3121 -6.7973 6.8178 14 6 4.4381 -6.5806 7.0814 15 7 5.5721 -6.4242 6.4481 16 14 4.4352 -7.0436 8.8911 17 1 4.5416 -8.5187 9.0248 18 1 5.5897 -6.4006 9.5685 19 1 3.1719 -6.5796 9.5188 20 6 2.1729 -5.9381 4.2450 21 6 2.1589 -5.2517 3.0523 22 1 -0.3634 0.0001 1.0276 23 1 -0.3633 0.8901 -0.5138 24 1 -0.3634 -0.8899 -0.5138 25 1 3.2429 1.1357 0.0004 26 1 3.3017 -1.1238 -0.2655 27 1 1.8128 -1.9835 -0.7258 28 1 2.6580 -4.2051 0.6934 29 1 4.1465 -3.3448 1.1540 30 1 4.9475 -3.3746 3.4362 31 1 5.0006 -4.5726 5.5798 32 1 6.4114 -6.5483 6.9184 33 1 1.3976 -6.6567 4.4661 34 1 1.3703 -5.4323 2.3370 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797809903.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:27 Heat of formation + Delta-G solvation = 5.020235 kcal Electronic energy + Delta-G solvation = -16212.366008 eV Core-core repulsion = 13454.419588 eV Total energy + Delta-G solvation = -2757.946420 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 282.054 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -37.67669 -37.27318 -35.41051 -34.05217 -31.28437 -29.36724 -28.26451 -27.52058 -27.05164 -23.95629 -21.07528 -20.18100 -18.97550 -17.37970 -16.22009 -15.49756 -15.37703 -15.20554 -14.39991 -14.29154 -13.99486 -13.83904 -12.98461 -12.88027 -12.58872 -12.15722 -12.08426 -12.03225 -11.94877 -11.86396 -11.65766 -11.11621 -10.98914 -10.79244 -10.73502 -10.46066 -9.85335 -9.71267 -9.47663 -9.17103 -8.86752 -7.54953 -7.36043 -7.29328 -6.86107 -4.42877 1.24869 2.13574 2.26599 2.75859 2.96491 3.01647 3.03556 3.08585 3.34903 3.86506 4.56112 4.56478 4.65677 5.06567 5.39383 5.44227 5.53089 5.56447 5.58940 5.73928 5.76687 6.05562 6.11237 6.27359 6.27639 6.32480 6.88288 6.98087 7.18830 7.27068 7.52955 7.75676 7.96940 8.01505 8.20308 8.54816 8.79616 8.87856 10.07633 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.034375 B = 0.002865 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.348195 B = 9769.697754 C =10018.687666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.085 4.085 3 C -0.108 4.108 4 Cl -0.093 7.093 5 C -0.062 4.062 6 S -0.262 6.262 7 C -0.004 4.004 8 C -0.212 4.212 9 C -0.078 4.078 10 C -0.167 4.167 11 C 0.117 3.883 12 C -0.455 4.455 13 H 0.080 0.920 14 C 0.075 3.925 15 N -0.787 5.787 16 Si 0.909 3.091 17 H -0.270 1.270 18 H -0.274 1.274 19 H -0.259 1.259 20 C -0.228 4.228 21 C -0.066 4.066 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.147 0.853 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.282 0.718 33 H 0.094 0.906 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.950 9.821 -10.554 14.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.087 4.087 3 C -0.155 4.155 4 Cl -0.064 7.064 5 C -0.209 4.209 6 S -0.029 6.029 7 C -0.150 4.150 8 C -0.216 4.216 9 C -0.098 4.098 10 C -0.187 4.187 11 C 0.114 3.886 12 C -0.484 4.484 13 H 0.098 0.902 14 C -0.144 4.144 15 N -0.411 5.411 16 Si 0.733 3.267 17 H -0.195 1.195 18 H -0.199 1.199 19 H -0.183 1.183 20 C -0.248 4.248 21 C -0.086 4.086 22 H 0.098 0.902 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.164 0.836 26 H 0.102 0.898 27 H 0.108 0.892 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.136 0.864 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.279 10.342 -9.686 14.801 hybrid contribution 0.794 -0.667 -0.301 1.080 sum -3.484 9.675 -9.987 14.335 Atomic orbital electron populations 1.20932 0.90645 1.02983 1.03420 1.21355 0.96993 0.92580 0.97778 1.24184 0.98021 0.85363 1.07981 1.98336 1.77474 1.33909 1.96703 1.22297 1.02163 0.96416 1.00055 1.87645 1.73639 1.27727 1.13913 1.22024 0.99788 0.93464 0.99719 1.18364 1.01260 1.05442 0.96560 1.20515 0.96384 0.98399 0.94487 1.21286 1.01964 0.98520 0.96924 1.17676 0.90282 0.89162 0.91490 1.19674 0.94344 1.30501 1.03905 0.90207 1.25961 0.94992 0.93069 1.00330 1.69826 0.98802 1.35053 1.37462 0.86288 0.79275 0.79239 0.81926 1.19480 1.19925 1.18291 1.20953 1.03264 1.05219 0.95359 1.20359 0.96062 0.95848 0.96328 0.90163 0.90979 0.91277 0.83573 0.89838 0.89197 0.91207 0.91157 0.89328 0.86351 0.90686 0.88789 0.89291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 9.59 36.00 0.35 -0.93 16 2 C -0.08 -0.94 5.32 -101.11 -0.54 -1.48 16 3 C -0.11 -1.13 10.41 28.97 0.30 -0.83 16 4 Cl -0.09 -0.96 27.23 -51.86 -1.41 -2.38 16 5 C -0.06 -0.73 6.14 36.01 0.22 -0.51 16 6 S -0.26 -4.26 21.70 -107.50 -2.33 -6.59 16 7 C 0.00 -0.06 6.06 36.01 0.22 0.16 16 8 C -0.21 -4.53 5.16 -104.33 -0.54 -5.06 16 9 C -0.08 -1.79 9.67 -39.66 -0.38 -2.17 16 10 C -0.17 -4.28 8.70 -38.87 -0.34 -4.61 16 11 C 0.12 3.07 5.57 -106.82 -0.60 2.48 16 12 C -0.45 -11.81 9.05 -37.74 -0.34 -12.16 16 13 H 0.08 1.99 7.91 -52.48 -0.41 1.57 16 14 C 0.08 1.84 5.14 -17.34 -0.09 1.76 16 15 N -0.79 -19.82 10.97 55.55 0.61 -19.21 16 16 Si 0.91 18.19 29.59 -169.99 -5.03 13.15 16 17 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 18 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 19 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 20 C -0.23 -5.51 9.80 -38.88 -0.38 -5.89 16 21 C -0.07 -1.45 9.67 -39.66 -0.38 -1.83 16 22 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.07 0.68 6.74 -51.93 -0.35 0.33 16 24 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 25 H 0.15 1.36 7.90 -52.48 -0.41 0.94 16 26 H 0.08 0.89 7.86 -51.93 -0.41 0.48 16 27 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16 28 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 29 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 30 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 31 H 0.12 3.12 6.18 -52.49 -0.32 2.80 16 32 H 0.28 6.43 8.30 -40.82 -0.34 6.10 16 33 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 34 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 320.70 15.07 4.83 4.83 Total: -1.00 -26.36 320.70 -10.26 -36.61 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -4.42 Total: 4.66 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: -2.50 Total: -31.08 kcal Atomic # 7 Polarization: -19.82 SS G_CDS: 0.61 Total: -19.21 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.15 kcal Atomic # 16 Polarization: -4.26 SS G_CDS: -2.33 Total: -6.59 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.41 Total: -2.38 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.36 -10.26 -36.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797809903.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.635 kcal (2) G-P(sol) polarization free energy of solvation -26.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds