Wall clock time and date at job start Tue Mar 31 2020 05:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00010 * 2 1 4 4 H 1.48499 * 109.47142 * 273.75065 * 3 2 1 5 5 H 1.48502 * 109.47092 * 33.74710 * 3 2 1 6 6 H 1.48495 * 109.47438 * 153.74824 * 3 2 1 7 7 C 1.37881 * 120.00237 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99377 * 353.90530 * 7 2 1 9 9 C 1.50694 * 119.99907 * 174.17522 * 7 2 1 10 10 C 1.53004 * 115.54842 * 294.55385 * 9 7 2 11 11 O 1.45205 * 109.47106 * 294.96447 * 10 9 7 12 12 C 1.34685 * 117.00111 * 184.03887 * 11 10 9 13 13 O 1.21443 * 119.99807 * 5.07106 * 12 11 10 14 14 C 1.47985 * 120.00134 * 185.06925 * 12 11 10 15 15 C 1.39827 * 120.17289 * 185.05569 * 14 12 11 16 16 C 1.38717 * 117.91594 * 179.71604 * 15 14 12 17 17 C 1.38759 * 118.06685 * 0.57014 * 16 15 14 18 18 Cl 1.73598 * 119.98034 * 179.70441 * 17 16 15 19 19 N 1.32319 * 120.04061 * 359.68397 * 17 16 15 20 20 N 1.28345 * 122.28022 * 0.02562 * 19 17 16 21 21 C 1.52998 * 117.49797 * 148.88974 * 9 7 2 22 22 C 1.52998 * 117.49971 * 80.22716 * 9 7 2 23 23 H 0.96996 * 120.00439 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47127 * 54.96549 * 10 9 7 25 25 H 1.09001 * 109.47121 * 174.96749 * 10 9 7 26 26 H 1.08010 * 121.03868 * 0.02562 * 15 14 12 27 27 H 1.08007 * 120.96555 * 180.27468 * 16 15 14 28 28 H 1.08995 * 117.49815 * 359.97438 * 21 9 7 29 29 H 1.09003 * 117.50241 * 145.02079 * 21 9 7 30 30 H 1.09007 * 117.49466 * 214.97565 * 22 9 7 31 31 H 1.08998 * 117.50062 * 359.97166 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4173 2.0922 -1.3971 5 1 1.4884 2.6285 0.7778 6 1 3.5840 1.4186 0.6192 7 6 2.0046 -1.1941 0.0005 8 1 1.4691 -2.1267 0.1003 9 6 3.5057 -1.1974 -0.1319 10 6 4.0514 -0.6903 -1.4684 11 8 3.6418 -1.5906 -2.5314 12 6 4.1118 -1.3320 -3.7668 13 8 4.9156 -0.4375 -3.9357 14 6 3.6487 -2.1379 -4.9183 15 6 4.2114 -1.9438 -6.1836 16 6 3.7466 -2.7288 -7.2285 17 6 2.7443 -3.6495 -6.9576 18 17 2.1205 -4.6521 -8.2301 19 7 2.2641 -3.7639 -5.7300 20 7 2.6927 -3.0455 -4.7566 21 6 4.2737 -2.3235 0.5631 22 6 4.3265 -0.9004 1.1247 23 1 -0.4850 0.8400 -0.0004 24 1 3.6591 0.3073 -1.6659 25 1 5.1398 -0.6507 -1.4250 26 1 4.9873 -1.2090 -6.3413 27 1 4.1496 -2.6231 -8.2250 28 1 3.6932 -3.0616 1.1164 29 1 5.1679 -2.7028 0.0685 30 1 5.2554 -0.3441 0.9992 31 1 3.7807 -0.7022 2.0471 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849787237.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:12 Heat of formation + Delta-G solvation = 5.371739 kcal Electronic energy + Delta-G solvation = -19160.217626 eV Core-core repulsion = 15855.993234 eV Total energy + Delta-G solvation = -3304.224393 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.056 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.50230 -39.87046 -37.34367 -37.17549 -35.65008 -33.66735 -32.82592 -32.12865 -27.75129 -25.97435 -25.21493 -24.85339 -21.85662 -21.42976 -19.23075 -18.68639 -17.78004 -17.36590 -16.93650 -16.33885 -15.92854 -15.41669 -14.78384 -14.66575 -14.10278 -13.81421 -13.23982 -12.73537 -12.71015 -12.39296 -12.30874 -11.97481 -11.85455 -11.10077 -10.97618 -10.78850 -10.72696 -10.58735 -10.25883 -10.12519 -10.08880 -10.04904 -9.56206 -9.09108 -8.70051 -8.50020 -6.10650 -4.11109 -0.09058 0.29595 1.14845 2.21868 2.61925 3.22720 3.23811 3.34844 3.38000 3.65264 3.95181 4.21328 4.29955 4.38379 4.51627 4.89045 5.08843 5.21382 5.31635 5.46563 5.54281 5.80384 5.88034 6.07928 6.24173 6.44536 6.58889 6.69079 6.95746 7.07742 7.68428 7.84057 8.14234 8.50394 8.95165 9.50798 11.01307 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.023519 B = 0.004346 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.264553 B = 6441.221635 C = 6675.636532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.079 3.921 3 Si 0.857 3.143 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.248 1.248 7 C -0.476 4.476 8 H 0.082 0.918 9 C -0.009 4.009 10 C 0.103 3.897 11 O -0.296 6.296 12 C 0.520 3.480 13 O -0.504 6.504 14 C 0.046 3.954 15 C -0.049 4.049 16 C -0.112 4.112 17 C 0.126 3.874 18 Cl 0.001 6.999 19 N -0.224 5.224 20 N -0.143 5.143 21 C -0.174 4.174 22 C -0.180 4.180 23 H 0.265 0.735 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.175 0.825 27 H 0.170 0.830 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.874 -4.648 -15.421 18.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.124 4.124 3 Si 0.684 3.316 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.172 1.172 7 C -0.513 4.513 8 H 0.100 0.900 9 C -0.010 4.010 10 C 0.030 3.970 11 O -0.209 6.209 12 C 0.361 3.639 13 O -0.392 6.392 14 C -0.099 4.099 15 C -0.077 4.077 16 C -0.142 4.142 17 C -0.043 4.043 18 Cl 0.030 6.970 19 N -0.071 5.071 20 N 0.009 4.991 21 C -0.211 4.211 22 C -0.218 4.218 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.193 0.807 27 H 0.188 0.812 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.840 -5.087 -14.473 17.705 hybrid contribution 1.282 1.721 -1.175 2.447 sum 10.121 -3.366 -15.648 18.938 Atomic orbital electron populations 1.69891 1.06230 1.27003 1.49699 1.24928 0.94553 0.98748 0.94141 0.87175 0.81799 0.84229 0.78373 1.20631 1.21331 1.17169 1.20238 0.86295 0.94831 1.49981 0.89997 1.19311 0.95362 0.99949 0.86367 1.23182 0.97203 0.91529 0.85083 1.86773 1.65988 1.52957 1.15160 1.20278 0.78672 0.81074 0.83904 1.90832 1.32116 1.30423 1.85859 1.22070 0.96915 0.97419 0.93494 1.22479 0.98000 0.97084 0.90165 1.22212 0.95704 0.94235 1.02017 1.23875 0.94236 0.93665 0.92495 1.98441 1.86362 1.67196 1.45035 1.73346 1.20595 1.17133 0.96001 1.73809 1.05390 0.99384 1.20551 1.22796 1.01434 0.91818 1.05043 1.23098 1.00843 0.98429 0.99381 0.92524 0.91729 0.92607 0.80727 0.81203 0.89169 0.90808 0.91050 0.88768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.15 13.96 55.43 0.77 -26.37 16 2 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 3 Si 0.86 21.01 24.98 -169.99 -4.25 16.76 16 4 H -0.28 -6.87 7.04 56.52 0.40 -6.47 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.25 -5.59 5.71 56.52 0.32 -5.27 16 7 C -0.48 -13.30 9.33 -34.44 -0.32 -13.63 16 8 H 0.08 2.52 8.06 -52.48 -0.42 2.10 16 9 C -0.01 -0.21 1.06 -155.66 -0.17 -0.37 16 10 C 0.10 2.27 5.01 37.16 0.19 2.45 16 11 O -0.30 -6.47 9.99 -40.45 -0.40 -6.87 16 12 C 0.52 9.69 7.94 34.73 0.28 9.96 16 13 O -0.50 -9.47 16.12 -19.22 -0.31 -9.78 16 14 C 0.05 0.71 6.83 -82.85 -0.57 0.15 16 15 C -0.05 -0.52 9.73 -38.81 -0.38 -0.90 16 16 C -0.11 -0.97 9.99 -39.21 -0.39 -1.37 16 17 C 0.13 1.45 7.37 -17.15 -0.13 1.32 16 18 Cl 0.00 0.01 29.13 -51.86 -1.51 -1.50 16 19 N -0.22 -3.49 11.50 32.93 0.38 -3.11 16 20 N -0.14 -2.53 11.31 33.31 0.38 -2.15 16 21 C -0.17 -3.48 9.96 -26.69 -0.27 -3.75 16 22 C -0.18 -3.66 8.01 -26.69 -0.21 -3.88 16 23 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 24 H 0.06 1.49 5.08 -51.93 -0.26 1.23 16 25 H 0.06 1.08 7.95 -51.93 -0.41 0.67 16 26 H 0.18 1.42 7.73 -52.48 -0.41 1.01 16 27 H 0.17 0.74 8.06 -52.48 -0.42 0.32 16 28 H 0.09 1.81 8.14 -51.93 -0.42 1.38 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 LS Contribution 295.28 15.07 4.45 4.45 Total: -1.00 -32.16 295.28 -5.39 -37.55 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -2.84 Total: -1.14 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -2.06 Total: -7.84 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 1.53 Total: -31.63 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.71 Total: -16.65 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.25 Total: 16.76 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -1.51 Total: -1.50 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.16 -5.39 -37.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849787237.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.926 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds