Wall clock time and date at job start Tue Mar 31 2020 05:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31163 * 1 3 3 Cl 1.73601 * 119.99986 * 2 1 4 4 C 1.50705 * 120.00067 * 180.02562 * 2 1 3 5 5 O 1.45192 * 109.46831 * 114.99667 * 4 2 1 6 6 C 1.34763 * 116.99726 * 179.97438 * 5 4 2 7 7 O 1.21513 * 119.99703 * 0.02562 * 6 5 4 8 8 C 1.47398 * 120.00219 * 180.02562 * 6 5 4 9 9 C 1.39729 * 120.19992 * 359.97438 * 8 6 5 10 10 C 1.37805 * 119.91272 * 179.97438 * 9 8 6 11 11 C 1.38588 * 120.33007 * 0.02562 * 10 9 8 12 12 C 1.38028 * 120.41707 * 359.97438 * 11 10 9 13 13 C 1.38832 * 120.07606 * 359.97438 * 12 11 10 14 14 O 1.35505 * 120.16557 * 179.97438 * 13 12 11 15 15 C 1.34808 * 116.99939 * 354.39821 * 14 13 12 16 16 H 1.08001 * 120.00267 * 5.06438 * 15 14 13 17 17 C 1.38707 * 119.99753 * 185.06265 * 15 14 13 18 18 N 1.31517 * 119.99994 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99839 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47364 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47284 * 119.99880 * 19 17 15 22 22 H 1.48505 * 109.47333 * 240.00171 * 19 17 15 23 23 H 1.07996 * 120.00147 * 179.97438 * 1 2 3 24 24 H 1.08000 * 119.99617 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46543 * 355.00246 * 4 2 1 26 26 H 1.08994 * 109.46991 * 235.00170 * 4 2 1 27 27 H 1.07997 * 120.04805 * 0.26151 * 9 8 6 28 28 H 1.07992 * 119.83705 * 180.02562 * 10 9 8 29 29 H 1.08000 * 119.79247 * 179.97438 * 11 10 9 30 30 H 1.08000 * 119.96099 * 180.02562 * 12 11 10 31 31 H 0.97001 * 119.99735 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 17 2.1796 1.5034 0.0000 4 6 2.0652 -1.3051 -0.0006 5 8 2.8081 -1.4344 -1.2413 6 6 3.5411 -2.5538 -1.4016 7 8 3.5586 -3.3988 -0.5286 8 6 4.3218 -2.7531 -2.6359 9 6 4.3043 -1.7844 -3.6428 10 6 5.0368 -1.9766 -4.7941 11 6 5.7914 -3.1272 -4.9596 12 6 5.8185 -4.0930 -3.9739 13 6 5.0878 -3.9164 -2.8066 14 8 5.1127 -4.8636 -1.8379 15 6 5.7723 -6.0060 -2.1158 16 1 6.3191 -6.1023 -3.0421 17 6 5.7487 -7.0578 -1.2118 18 7 5.0825 -6.9408 -0.0840 19 14 6.6633 -8.6405 -1.5965 20 1 7.3284 -8.5192 -2.9187 21 1 7.6858 -8.8887 -0.5485 22 1 5.7024 -9.7723 -1.6284 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5399 0.9353 0.0004 25 1 1.3602 -2.1316 0.0886 26 1 2.7572 -1.3254 0.8412 27 1 3.7213 -0.8841 -3.5169 28 1 5.0228 -1.2269 -5.5713 29 1 6.3618 -3.2691 -5.8656 30 1 6.4094 -4.9866 -4.1104 31 1 5.0664 -7.6762 0.5483 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000920413712.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:34 Heat of formation + Delta-G solvation = -89.176692 kcal Electronic energy + Delta-G solvation = -19135.815015 eV Core-core repulsion = 15795.197944 eV Total energy + Delta-G solvation = -3340.617071 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.049 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.58987 -40.42824 -38.18383 -38.00698 -37.18771 -34.52626 -34.36914 -32.28741 -30.64560 -28.21171 -27.37300 -24.92275 -23.29852 -21.88142 -21.24695 -19.91640 -19.24917 -18.41180 -17.83273 -17.41785 -16.49843 -16.22158 -16.15542 -15.72109 -15.44071 -15.23398 -14.92493 -14.45185 -14.15118 -13.82021 -13.57352 -13.26538 -13.03721 -12.78381 -12.70086 -12.57439 -12.35847 -12.09117 -11.89865 -11.73563 -11.61280 -11.09571 -10.86886 -10.28450 -9.93063 -9.12402 -8.48775 -6.19688 -0.05703 0.61901 0.68542 1.19021 1.34145 1.44207 1.53842 1.71686 1.88960 2.14277 2.81809 3.14533 3.35564 3.44272 3.94313 3.99781 4.09049 4.20728 4.30476 4.51623 4.60299 4.63346 4.91866 5.04579 5.06200 5.12325 5.12434 5.31146 5.46919 5.59311 5.66271 5.93186 6.11791 6.89531 6.94981 7.71032 8.71632 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.020101 B = 0.004662 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.660318 B = 6004.743363 C = 7163.925315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.098 4.098 3 Cl -0.084 7.084 4 C 0.100 3.900 5 O -0.347 6.347 6 C 0.501 3.499 7 O -0.528 6.528 8 C -0.237 4.237 9 C -0.012 4.012 10 C -0.204 4.204 11 C -0.026 4.026 12 C -0.255 4.255 13 C 0.158 3.842 14 O -0.187 6.187 15 C -0.427 4.427 16 H 0.112 0.888 17 C -0.020 4.020 18 N -0.903 5.903 19 Si 1.024 2.976 20 H -0.244 1.244 21 H -0.269 1.269 22 H -0.269 1.269 23 H 0.143 0.857 24 H 0.144 0.856 25 H 0.092 0.908 26 H 0.070 0.930 27 H 0.153 0.847 28 H 0.165 0.835 29 H 0.161 0.839 30 H 0.132 0.868 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.711 12.810 -6.395 15.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 Cl -0.056 7.056 4 C 0.026 3.974 5 O -0.265 6.265 6 C 0.348 3.652 7 O -0.419 6.419 8 C -0.240 4.240 9 C -0.030 4.030 10 C -0.222 4.222 11 C -0.044 4.044 12 C -0.274 4.274 13 C 0.102 3.898 14 O -0.089 6.089 15 C -0.503 4.503 16 H 0.129 0.871 17 C -0.219 4.219 18 N -0.539 5.539 19 Si 0.842 3.158 20 H -0.167 1.167 21 H -0.194 1.194 22 H -0.194 1.194 23 H 0.161 0.839 24 H 0.162 0.838 25 H 0.111 0.889 26 H 0.088 0.912 27 H 0.171 0.829 28 H 0.182 0.818 29 H 0.178 0.822 30 H 0.149 0.851 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.801 12.564 -5.665 14.953 hybrid contribution 0.406 -0.875 0.687 1.184 sum -5.395 11.689 -4.979 13.803 Atomic orbital electron populations 1.24527 0.92289 1.06137 0.92351 1.22787 0.94044 0.85883 1.09762 1.98368 1.78593 1.31483 1.97115 1.22066 0.95093 0.95075 0.85145 1.86556 1.57939 1.41082 1.40948 1.21394 0.77451 0.78997 0.87342 1.90994 1.62615 1.44287 1.43976 1.18456 1.09278 0.99307 0.96939 1.21372 0.94941 0.95809 0.90875 1.21213 1.01891 1.00004 0.99106 1.21534 0.94359 0.91333 0.97200 1.21295 1.06820 1.03944 0.95374 1.19965 0.92040 0.88807 0.88945 1.84141 1.64943 1.23832 1.36002 1.22139 1.30635 0.90036 1.07458 0.87080 1.26779 0.97874 1.02849 0.94427 1.70303 1.40182 1.33814 1.09581 0.84478 0.77365 0.74415 0.79554 1.16657 1.19437 1.19394 0.83920 0.83773 0.88948 0.91171 0.82893 0.81760 0.82151 0.85069 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.86 14.05 67.62 0.95 -0.91 16 2 C -0.10 -2.30 6.14 25.49 0.16 -2.14 16 3 Cl -0.08 -1.99 28.99 -2.72 -0.08 -2.07 16 4 C 0.10 3.13 5.79 71.24 0.41 3.54 16 5 O -0.35 -12.94 9.45 -56.73 -0.54 -13.48 16 6 C 0.50 23.58 7.89 70.23 0.55 24.13 16 7 O -0.53 -30.30 14.96 26.79 0.40 -29.90 16 8 C -0.24 -10.66 5.89 -20.00 -0.12 -10.77 16 9 C -0.01 -0.40 9.61 22.53 0.22 -0.18 16 10 C -0.20 -5.65 10.02 22.25 0.22 -5.43 16 11 C -0.03 -0.80 10.03 22.30 0.22 -0.57 16 12 C -0.26 -10.55 9.16 22.36 0.20 -10.35 16 13 C 0.16 8.01 6.66 22.92 0.15 8.16 16 14 O -0.19 -11.59 7.84 1.07 0.01 -11.58 16 15 C -0.43 -25.02 9.49 67.93 0.64 -24.38 16 16 H 0.11 5.78 5.21 -2.91 -0.02 5.77 16 17 C -0.02 -1.13 5.49 84.85 0.47 -0.66 16 18 N -0.90 -57.35 13.67 21.62 0.30 -57.06 16 19 Si 1.02 42.75 29.55 68.60 2.03 44.77 16 20 H -0.24 -9.14 7.11 99.48 0.71 -8.43 16 21 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 23 H 0.14 1.86 7.84 -2.91 -0.02 1.84 16 24 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 25 H 0.09 2.78 7.79 -2.39 -0.02 2.77 16 26 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.15 4.24 7.61 -2.91 -0.02 4.22 16 28 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16 29 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 30 H 0.13 5.39 5.64 -2.91 -0.02 5.38 16 31 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -79.62 300.70 7.37 -72.25 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 1.17 Total: 16.63 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 4.09 Total: -19.56 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: 0.30 Total: -57.06 kcal Atomic # 8 Polarization: -54.83 SS G_CDS: -0.13 Total: -54.96 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -0.08 Total: -2.07 kcal Total: -79.62 7.37 -72.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920413712.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.930 kcal (2) G-P(sol) polarization free energy of solvation -79.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds