Wall clock time and date at job start Tue Mar 31 2020 05:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31133 * 126.54827 * 2 1 4 4 C 1.34489 * 105.61151 * 180.02562 * 3 2 1 5 5 C 1.50708 * 126.28384 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.46877 * 89.99779 * 5 4 3 7 7 N 1.29938 * 126.28918 * 269.68578 * 6 5 4 8 8 O 1.21300 * 110.25344 * 179.84598 * 7 6 5 9 9 C 1.33642 * 109.80714 * 0.42710 * 8 7 6 10 10 C 1.50708 * 126.55210 * 179.71885 * 9 8 7 11 11 S 1.81002 * 109.46900 * 270.02433 * 10 9 8 12 12 C 1.76197 * 99.99737 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00193 * 0.02562 * 12 11 10 14 14 C 1.38799 * 119.99784 * 179.97438 * 12 11 10 15 15 N 1.31627 * 120.00342 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99822 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47149 * 90.00030 * 16 14 12 18 18 H 1.48503 * 109.46999 * 210.00080 * 16 14 12 19 19 H 1.48501 * 109.47016 * 329.99901 * 16 14 12 20 20 N 1.31129 * 106.90060 * 359.73575 * 9 8 7 21 21 N 1.29939 * 107.42909 * 359.97438 * 4 3 2 22 22 O 1.21301 * 110.24820 * 359.71012 * 21 4 3 23 23 H 1.08999 * 109.47015 * 90.00412 * 1 2 3 24 24 H 1.09000 * 109.46646 * 209.99565 * 1 2 3 25 25 H 1.09000 * 109.47248 * 330.00282 * 1 2 3 26 26 H 1.08998 * 109.46698 * 209.99960 * 5 4 3 27 27 H 1.09004 * 109.47034 * 329.99854 * 5 4 3 28 28 H 1.09004 * 109.46883 * 30.01898 * 10 9 8 29 29 H 1.08995 * 109.47182 * 150.01916 * 10 9 8 30 30 H 0.96999 * 120.00483 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2880 1.0535 0.0000 4 6 3.5441 0.5729 -0.0006 5 6 4.8112 1.3888 -0.0014 6 6 5.2342 1.6610 1.4193 7 7 4.8876 2.6834 2.1424 8 8 5.3923 2.6098 3.2430 9 6 6.1388 1.5044 3.3258 10 6 6.9367 1.0476 4.5199 11 16 8.6082 1.7357 4.4276 12 6 9.2984 1.0616 5.9019 13 1 8.6976 0.4304 6.5400 14 6 10.6147 1.3408 6.2427 15 7 11.3474 2.1087 5.4643 16 14 11.3466 0.6254 7.8055 17 1 11.9647 -0.6910 7.5051 18 1 12.3819 1.5491 8.3350 19 1 10.2752 0.4497 8.8186 20 7 6.0446 0.8933 2.1694 21 7 3.4646 -0.7241 -0.0003 22 8 2.3030 -1.0735 0.0061 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3632 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 5.5981 0.8371 -0.5155 27 1 4.6345 2.3337 -0.5153 28 1 6.4522 1.3915 5.4337 29 1 6.9916 -0.0410 4.5253 30 1 12.2671 2.3042 5.7027 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116019745.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:25 Heat of formation + Delta-G solvation = 132.736171 kcal Electronic energy + Delta-G solvation = -18421.017848 eV Core-core repulsion = 15156.652849 eV Total energy + Delta-G solvation = -3264.364999 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.057 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.86282 -45.33991 -36.79880 -35.65495 -34.23285 -33.20216 -32.57301 -30.08045 -29.07691 -28.41866 -25.64772 -24.27927 -23.33999 -22.45187 -20.97483 -18.49218 -18.04932 -17.97325 -17.60857 -16.92857 -15.41016 -14.92712 -14.81196 -14.63736 -14.49902 -14.19758 -13.84652 -13.43377 -13.15761 -13.03795 -12.78222 -12.33213 -11.92704 -11.75400 -11.45802 -11.28428 -11.17528 -11.12565 -10.96230 -10.77673 -10.29248 -10.15830 -9.48226 -9.19641 -8.57195 -6.75537 -6.37027 -4.11858 0.88892 1.28635 1.86949 2.28691 2.56306 2.99433 3.16727 3.19307 3.24233 3.32855 3.41696 3.67797 3.83741 4.05433 4.17109 4.62776 4.82048 4.84470 5.00147 5.00901 5.10788 5.22972 5.26162 5.39831 5.55218 5.66998 5.71050 5.87179 6.09468 6.19435 7.47333 7.92355 8.21684 8.36778 9.08959 10.70994 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.042050 B = 0.003074 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.708742 B = 9105.047805 C = 9280.912624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.173 3.827 3 N -0.473 5.473 4 C 0.174 3.826 5 C 0.069 3.931 6 C 0.161 3.839 7 N -0.375 5.375 8 O 0.083 5.917 9 C 0.229 3.771 10 C -0.044 4.044 11 S -0.080 6.080 12 C -0.526 4.526 13 H 0.080 0.920 14 C 0.075 3.925 15 N -0.867 5.867 16 Si 0.925 3.075 17 H -0.275 1.275 18 H -0.281 1.281 19 H -0.270 1.270 20 N -0.473 5.473 21 N -0.363 5.363 22 O 0.082 5.918 23 H 0.102 0.898 24 H 0.098 0.902 25 H 0.104 0.896 26 H 0.125 0.875 27 H 0.124 0.876 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.418 -3.610 -9.814 22.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.048 4.048 3 N -0.208 5.208 4 C -0.100 4.100 5 C 0.029 3.971 6 C -0.113 4.113 7 N -0.083 5.083 8 O 0.023 5.977 9 C 0.009 3.991 10 C -0.192 4.192 11 S 0.146 5.854 12 C -0.674 4.674 13 H 0.099 0.901 14 C -0.135 4.135 15 N -0.502 5.502 16 Si 0.751 3.249 17 H -0.201 1.201 18 H -0.207 1.207 19 H -0.195 1.195 20 N -0.208 5.208 21 N -0.069 5.069 22 O 0.020 5.980 23 H 0.120 0.880 24 H 0.116 0.884 25 H 0.123 0.877 26 H 0.143 0.857 27 H 0.142 0.858 28 H 0.122 0.878 29 H 0.129 0.871 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.411 -2.619 -11.231 21.724 hybrid contribution -0.022 -1.217 2.004 2.345 sum -18.433 -3.835 -9.227 20.967 Atomic orbital electron populations 1.20398 0.80083 1.05976 1.05428 1.28882 0.99017 0.80713 0.96160 1.71916 1.00068 1.28866 1.19914 1.25310 0.94694 0.88235 1.01783 1.17962 0.90247 1.00454 0.88440 1.25096 0.97221 0.89640 0.99366 1.74611 1.18543 1.22166 0.92960 1.85310 1.46465 1.39424 1.26523 1.28256 0.91564 0.83123 0.96180 1.22006 1.01052 1.04889 0.91271 1.85196 0.99268 1.65632 1.35341 1.22707 1.00132 1.36697 1.07903 0.90142 1.25030 0.95782 0.94747 0.97957 1.69993 1.08943 1.34338 1.36930 0.86063 0.78804 0.78827 0.81243 1.20097 1.20653 1.19453 1.71953 1.18160 1.28884 1.01765 1.74730 0.97130 1.15441 1.19555 1.85319 1.11451 1.35801 1.65403 0.87957 0.88365 0.87700 0.85650 0.85828 0.87829 0.87062 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.24 10.51 36.01 0.38 0.14 16 2 C 0.17 1.69 8.51 -13.05 -0.11 1.58 16 3 N -0.47 -6.12 11.55 -9.87 -0.11 -6.24 16 4 C 0.17 2.44 7.45 -156.38 -1.17 1.27 16 5 C 0.07 0.93 6.47 -29.03 -0.19 0.74 16 6 C 0.16 2.78 7.45 -156.38 -1.17 1.61 16 7 N -0.38 -6.83 12.16 30.89 0.38 -6.45 16 8 O 0.08 1.56 11.31 18.10 0.20 1.76 16 9 C 0.23 4.39 7.77 -13.06 -0.10 4.29 16 10 C -0.04 -0.85 6.30 36.01 0.23 -0.62 16 11 S -0.08 -2.01 21.42 -107.50 -2.30 -4.31 16 12 C -0.53 -14.17 9.50 30.94 0.29 -13.88 16 13 H 0.08 2.04 7.80 -52.48 -0.41 1.63 16 14 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 15 N -0.87 -24.98 13.22 55.49 0.73 -24.25 16 16 Si 0.92 20.60 29.55 -169.99 -5.02 15.58 16 17 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 20 N -0.47 -9.12 11.55 -9.87 -0.11 -9.24 16 21 N -0.36 -5.23 12.16 30.89 0.38 -4.85 16 22 O 0.08 0.97 11.31 18.12 0.20 1.17 16 23 H 0.10 0.21 8.14 -51.93 -0.42 -0.22 16 24 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.13 1.49 8.14 -51.93 -0.42 1.06 16 27 H 0.12 1.38 8.14 -51.93 -0.42 0.95 16 28 H 0.10 1.82 8.14 -51.91 -0.42 1.39 16 29 H 0.11 2.08 8.14 -51.92 -0.42 1.66 16 30 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 298.11 15.07 4.49 4.49 Total: -1.00 -33.38 298.11 -5.60 -38.98 By element: Atomic # 1 Polarization: -1.21 SS G_CDS: -2.50 Total: -3.71 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -1.93 Total: -2.93 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: 1.26 Total: -51.03 kcal Atomic # 8 Polarization: 2.52 SS G_CDS: 0.41 Total: 2.93 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: -2.01 SS G_CDS: -2.30 Total: -4.31 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.38 -5.60 -38.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116019745.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.714 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds