Wall clock time and date at job start Tue Mar 31 2020 05:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00137 * 2 1 4 4 H 1.48496 * 109.47246 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46987 * 120.00547 * 3 2 1 6 6 H 1.48503 * 109.47104 * 240.00255 * 3 2 1 7 7 C 1.37879 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00347 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99774 * 359.97438 * 7 2 1 10 10 O 1.42897 * 112.94831 * 50.33679 * 9 7 2 11 11 C 1.53947 * 113.74274 * 278.74285 * 9 7 2 12 12 N 1.47808 * 86.03859 * 222.08491 * 11 9 7 13 13 C 1.34776 * 134.45957 * 204.64018 * 12 11 9 14 14 O 1.21508 * 120.00497 * 174.37424 * 13 12 11 15 15 C 1.48152 * 119.99835 * 354.37942 * 13 12 11 16 16 C 1.39866 * 120.91659 * 353.09800 * 15 13 12 17 17 C 1.38089 * 119.03932 * 179.70959 * 16 15 13 18 18 N 1.31854 * 120.91232 * 0.57750 * 17 16 15 19 19 C 1.31886 * 122.02937 * 359.71478 * 18 17 16 20 20 Cl 1.73600 * 119.56861 * 179.97438 * 19 18 17 21 21 C 1.38345 * 120.86388 * 359.97438 * 19 18 17 22 22 C 1.47583 * 91.05030 * 24.54849 * 12 11 9 23 23 H 0.97004 * 119.99562 * 359.97438 * 1 2 3 24 24 H 0.96709 * 113.99730 * 309.66341 * 10 9 7 25 25 H 1.09000 * 113.76861 * 336.34804 * 11 9 7 26 26 H 1.08999 * 113.77444 * 107.74565 * 11 9 7 27 27 H 1.08009 * 120.48061 * 0.02562 * 16 15 13 28 28 H 1.07994 * 119.54399 * 180.29471 * 17 16 15 29 29 H 1.07993 * 120.50888 * 179.97438 * 21 19 18 30 30 H 1.09000 * 113.76538 * 221.15186 * 22 12 11 31 31 H 1.08996 * 113.86924 * 89.77030 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1029 1.6964 -1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.2446 -2.5614 -1.0131 11 6 0.7561 -2.9291 1.3924 12 7 1.1918 -4.2899 1.0142 13 6 0.8425 -5.5337 1.3982 14 8 1.3118 -6.4995 0.8294 15 6 -0.1137 -5.7235 2.5137 16 6 -0.5554 -4.6361 3.2744 17 6 -1.4518 -4.8566 4.3015 18 7 -1.8819 -6.0724 4.5759 19 6 -1.4867 -7.1260 3.8880 20 17 -2.0935 -8.6981 4.3050 21 6 -0.5950 -6.9947 2.8385 22 6 2.1607 -3.7401 0.0462 23 1 -0.4850 0.8401 0.0004 24 1 -0.3475 -1.7969 -1.0267 25 1 1.3274 -2.4974 2.2142 26 1 -0.3215 -2.8325 1.5250 27 1 -0.2045 -3.6377 3.0584 28 1 -1.8019 -4.0222 4.8910 29 1 -0.2749 -7.8614 2.2793 30 1 2.2024 -4.2899 -0.8940 31 1 3.1461 -3.5468 0.4700 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116700452.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:38 Heat of formation + Delta-G solvation = -10.441485 kcal Electronic energy + Delta-G solvation = -19438.436016 eV Core-core repulsion = 16133.525911 eV Total energy + Delta-G solvation = -3304.910105 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.056 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.64082 -39.31870 -37.47855 -36.74444 -34.17015 -32.79522 -32.33481 -31.21546 -28.83094 -25.88163 -25.69247 -24.04504 -23.46848 -20.50944 -19.15578 -17.76030 -17.12313 -16.91590 -16.17221 -15.38685 -15.33500 -15.06828 -14.85344 -14.37547 -14.22721 -14.04095 -13.32298 -12.83698 -12.59648 -12.18657 -11.93875 -11.83516 -11.68179 -11.45492 -11.20995 -11.11505 -10.63692 -10.42739 -10.19349 -10.00133 -9.68093 -9.42328 -9.13128 -8.88215 -8.56539 -8.06333 -6.50204 -4.61169 0.61170 0.80790 1.64109 2.99856 3.09751 3.15721 3.16707 3.22587 3.74296 4.10088 4.33710 4.46329 4.72400 4.76279 4.85326 5.00288 5.41459 5.48048 5.52598 5.75885 5.91683 5.99306 6.20141 6.23178 6.28215 6.41914 6.50237 6.93384 7.51513 7.52107 7.68596 8.17071 8.42225 8.43419 9.10482 9.29875 10.56603 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.031799 B = 0.004132 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.321165 B = 6775.500368 C = 7303.464459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.284 1.284 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.541 4.541 8 H 0.072 0.928 9 C 0.241 3.759 10 O -0.571 6.571 11 C 0.067 3.933 12 N -0.621 5.621 13 C 0.568 3.432 14 O -0.549 6.549 15 C -0.060 4.060 16 C -0.145 4.145 17 C 0.114 3.886 18 N -0.469 5.469 19 C 0.166 3.834 20 Cl -0.031 7.031 21 C -0.103 4.103 22 C 0.114 3.886 23 H 0.275 0.725 24 H 0.393 0.607 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.163 0.837 28 H 0.173 0.827 29 H 0.156 0.844 30 H 0.075 0.925 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.337 -6.098 7.652 10.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.129 4.129 3 Si 0.735 3.265 4 H -0.210 1.210 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.091 0.909 9 C 0.200 3.800 10 O -0.383 6.383 11 C -0.055 4.055 12 N -0.354 5.354 13 C 0.357 3.643 14 O -0.429 6.429 15 C -0.071 4.071 16 C -0.165 4.165 17 C -0.042 4.042 18 N -0.181 5.181 19 C 0.002 3.998 20 Cl -0.003 7.003 21 C -0.125 4.125 22 C -0.008 4.008 23 H 0.085 0.915 24 H 0.248 0.752 25 H 0.107 0.893 26 H 0.095 0.905 27 H 0.181 0.819 28 H 0.190 0.810 29 H 0.173 0.827 30 H 0.093 0.907 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.652 -7.480 7.973 11.250 hybrid contribution 0.526 1.396 -0.290 1.520 sum -2.126 -6.084 7.683 10.028 Atomic orbital electron populations 1.69380 1.06177 1.28474 1.49663 1.25061 0.95034 0.99905 0.92880 0.86378 0.79522 0.81536 0.79062 1.20957 1.19846 1.19805 1.21445 0.93964 0.89787 1.52668 0.90948 1.19816 0.85642 0.91274 0.83304 1.86080 1.47034 1.49925 1.55259 1.24604 1.00294 0.77236 1.03400 1.50130 1.39784 1.04390 1.41049 1.17635 0.81718 0.82430 0.82528 1.90731 1.56831 1.39268 1.56061 1.20473 0.97026 0.93297 0.96289 1.23161 0.96917 1.01310 0.95126 1.22706 0.93450 0.92965 0.95113 1.66858 1.24302 0.98936 1.28018 1.21457 0.95812 0.88587 0.93940 1.98399 1.87175 1.21325 1.93391 1.21929 0.95568 0.98713 0.96247 1.23553 0.93238 0.92604 0.91369 0.91490 0.75227 0.89268 0.90486 0.81946 0.81033 0.82651 0.90670 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.22 11.20 55.43 0.62 -20.60 16 2 C 0.07 1.73 5.40 -17.82 -0.10 1.63 16 3 Si 0.91 18.36 29.54 -169.99 -5.02 13.34 16 4 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 7 C -0.54 -12.60 8.61 -34.44 -0.30 -12.90 16 8 H 0.07 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.24 5.34 1.40 -90.85 -0.13 5.22 16 10 O -0.57 -13.82 13.48 -35.23 -0.48 -14.30 16 11 C 0.07 1.28 5.65 -2.84 -0.02 1.26 16 12 N -0.62 -12.17 3.60 -179.11 -0.64 -12.81 16 13 C 0.57 11.09 8.01 -12.19 -0.10 10.99 16 14 O -0.55 -12.08 17.20 5.36 0.09 -11.99 16 15 C -0.06 -0.97 5.91 -104.65 -0.62 -1.59 16 16 C -0.15 -2.03 9.16 -39.03 -0.36 -2.39 16 17 C 0.11 1.43 11.17 -17.60 -0.20 1.24 16 18 N -0.47 -6.63 10.31 -10.41 -0.11 -6.74 16 19 C 0.17 2.35 7.27 -17.49 -0.13 2.22 16 20 Cl -0.03 -0.39 29.10 -51.86 -1.51 -1.89 16 21 C -0.10 -1.54 9.45 -38.98 -0.37 -1.91 16 22 C 0.11 2.29 8.23 -2.97 -0.02 2.27 16 23 H 0.27 6.24 8.31 -40.82 -0.34 5.90 16 24 H 0.39 9.57 6.60 45.56 0.30 9.87 16 25 H 0.09 1.58 8.02 -51.93 -0.42 1.16 16 26 H 0.08 1.45 6.91 -51.93 -0.36 1.09 16 27 H 0.16 2.21 4.28 -52.48 -0.22 1.98 16 28 H 0.17 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.16 2.23 7.76 -52.49 -0.41 1.83 16 30 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 31 H 0.09 1.66 8.09 -51.93 -0.42 1.24 16 LS Contribution 289.99 15.07 4.37 4.37 Total: -1.00 -26.72 289.99 -6.92 -33.64 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -1.92 Total: 10.95 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -2.33 Total: 6.04 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: -0.13 Total: -40.16 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.38 Total: -26.29 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.02 Total: 13.34 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.51 Total: -1.89 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -26.72 -6.92 -33.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116700452.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.200 kcal (2) G-P(sol) polarization free energy of solvation -26.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds