Wall clock time and date at job start Tue Mar 31 2020 05:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00073 * 2 1 4 4 H 1.48498 * 109.46804 * 270.00145 * 3 2 1 5 5 H 1.48497 * 109.46913 * 30.00149 * 3 2 1 6 6 H 1.48498 * 109.46987 * 150.00565 * 3 2 1 7 7 C 1.37879 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00351 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99924 * 179.97438 * 7 2 1 10 10 C 1.50697 * 109.47559 * 179.97438 * 9 7 2 11 11 O 1.21277 * 119.99660 * 359.97438 * 10 9 7 12 12 N 1.34772 * 120.00301 * 180.02562 * 10 9 7 13 13 C 1.39443 * 120.00094 * 185.27923 * 12 10 9 14 14 C 1.39190 * 119.91522 * 213.53767 * 13 12 10 15 15 C 1.37609 * 120.11107 * 180.02562 * 14 13 12 16 16 C 1.39794 * 119.93991 * 0.02562 * 15 14 13 17 17 C 1.47525 * 120.08641 * 180.25141 * 16 15 14 18 18 N 1.34773 * 120.00192 * 359.72700 * 17 16 15 19 19 O 1.21599 * 120.00069 * 179.72042 * 17 16 15 20 20 C 1.39869 * 119.83223 * 359.97438 * 16 15 14 21 21 Cl 1.73598 * 120.05947 * 180.02562 * 20 16 15 22 22 C 1.37867 * 119.88628 * 0.02562 * 20 16 15 23 23 H 0.96992 * 119.99633 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46952 * 59.99568 * 9 7 2 25 25 H 1.09001 * 109.47302 * 300.00331 * 9 7 2 26 26 H 0.97001 * 119.99916 * 5.27077 * 12 10 9 27 27 H 1.07994 * 119.94627 * 0.04226 * 14 13 12 28 28 H 1.08002 * 120.03626 * 180.02562 * 15 14 13 29 29 H 0.97001 * 119.99571 * 359.97438 * 18 17 16 30 30 H 0.96996 * 120.00658 * 180.02562 * 18 17 16 31 31 H 1.08001 * 119.96834 * 179.97438 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1942 -0.0011 10 6 4.0139 -2.6149 -0.0010 11 8 3.2258 -3.5367 0.0000 12 7 5.3389 -2.8612 -0.0009 13 6 5.8047 -4.1709 -0.1119 14 6 6.9730 -4.5500 0.5428 15 6 7.4366 -5.8412 0.4356 16 6 6.7331 -6.7735 -0.3326 17 6 7.2242 -8.1601 -0.4453 18 7 8.3553 -8.5280 0.1885 19 8 6.6083 -8.9711 -1.1098 20 6 5.5594 -6.3899 -0.9895 21 17 4.6808 -7.5431 -1.9445 22 6 5.1013 -5.0944 -0.8773 23 1 -0.4849 0.8400 0.0004 24 1 3.8752 -0.6805 0.8888 25 1 3.8746 -0.6801 -0.8911 26 1 5.9686 -2.1274 0.0762 27 1 7.5165 -3.8297 1.1362 28 1 8.3430 -6.1342 0.9445 29 1 8.8467 -7.8810 0.7183 30 1 8.6784 -9.4396 0.1141 31 1 4.1954 -4.7967 -1.3843 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143201301.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:11 Heat of formation + Delta-G solvation = -46.150417 kcal Electronic energy + Delta-G solvation = -18832.996823 eV Core-core repulsion = 15526.538262 eV Total energy + Delta-G solvation = -3306.458561 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.056 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.57232 -39.51084 -37.84013 -36.32646 -34.55737 -33.76097 -33.00236 -30.92115 -30.53465 -29.12666 -24.67403 -23.04283 -22.87183 -20.85866 -19.98398 -18.48047 -17.61747 -17.24575 -16.80663 -15.93937 -15.33238 -15.22697 -14.87955 -14.69450 -14.34754 -14.23744 -13.67855 -13.36583 -13.16098 -12.86522 -12.32951 -11.99366 -11.72986 -11.44950 -11.13010 -10.96359 -10.71033 -10.25277 -10.09084 -9.86897 -9.68083 -9.41254 -9.18556 -8.83898 -8.68824 -8.18638 -6.13485 -4.15308 0.60145 1.09506 2.19979 2.65241 3.17274 3.21437 3.25362 3.25616 3.29417 3.36558 3.69875 4.30431 4.49207 4.63915 4.90462 5.09403 5.16176 5.20572 5.41188 5.75718 5.83746 5.97925 6.14183 6.26303 6.41482 6.57947 6.70640 6.85100 7.11543 7.32985 7.70006 8.10885 8.40196 8.66850 9.05042 9.42797 10.99194 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.033988 B = 0.003811 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.621745 B = 7345.253128 C = 8010.116787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.094 0.906 9 C -0.026 4.026 10 C 0.519 3.481 11 O -0.499 6.499 12 N -0.689 5.689 13 C 0.210 3.790 14 C -0.165 4.165 15 C -0.052 4.052 16 C -0.173 4.173 17 C 0.563 3.437 18 N -0.855 5.855 19 O -0.522 6.522 20 C 0.043 3.957 21 Cl -0.030 7.030 22 C -0.132 4.132 23 H 0.266 0.734 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.412 0.588 27 H 0.137 0.863 28 H 0.135 0.865 29 H 0.398 0.602 30 H 0.403 0.597 31 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.126 -9.464 1.391 23.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.131 4.131 3 Si 0.702 3.298 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.112 0.888 9 C -0.066 4.066 10 C 0.309 3.691 11 O -0.370 6.370 12 N -0.334 5.334 13 C 0.112 3.888 14 C -0.186 4.186 15 C -0.071 4.071 16 C -0.178 4.178 17 C 0.349 3.651 18 N -0.420 5.420 19 O -0.398 6.398 20 C 0.014 3.986 21 Cl 0.000 7.000 22 C -0.154 4.154 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.248 0.752 27 H 0.155 0.845 28 H 0.152 0.848 29 H 0.227 0.773 30 H 0.234 0.766 31 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 19.653 -10.416 0.817 22.258 hybrid contribution 1.071 1.292 0.321 1.708 sum 20.724 -9.124 1.138 22.673 Atomic orbital electron populations 1.69885 1.06199 1.27030 1.49884 1.24968 0.94816 0.98767 0.94560 0.86883 0.80249 0.84036 0.78647 1.20024 1.20993 1.19122 1.20943 0.87299 0.95916 1.51682 0.88834 1.19726 1.00016 0.87806 0.99033 1.21861 0.79581 0.94310 0.73319 1.90644 1.54564 1.46707 1.45108 1.44164 1.09457 1.05825 1.73993 1.17913 0.92893 0.85998 0.92011 1.20899 0.98344 0.97035 1.02322 1.20904 0.98255 0.92123 0.95861 1.19521 0.97968 0.94738 1.05554 1.18053 0.80543 0.87531 0.79000 1.43739 1.27569 1.16243 1.54468 1.90920 1.56272 1.52932 1.39649 1.20782 0.92285 0.90996 0.94556 1.98413 1.74265 1.58321 1.69049 1.21160 1.02671 0.91219 1.00322 0.92399 0.93110 0.93370 0.75170 0.84493 0.84775 0.77279 0.76568 0.82688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.93 13.96 55.43 0.77 -26.15 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 19.86 27.47 -169.99 -4.67 15.19 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 6 H -0.27 -5.51 6.54 56.52 0.37 -5.14 16 7 C -0.52 -14.48 9.48 -34.44 -0.33 -14.81 16 8 H 0.09 2.98 7.00 -52.49 -0.37 2.61 16 9 C -0.03 -0.56 4.53 -29.03 -0.13 -0.70 16 10 C 0.52 10.33 7.55 -10.99 -0.08 10.25 16 11 O -0.50 -11.93 13.14 5.56 0.07 -11.86 16 12 N -0.69 -9.90 5.32 -9.87 -0.05 -9.96 16 13 C 0.21 2.93 6.27 -83.74 -0.53 2.41 16 14 C -0.17 -1.67 9.94 -39.46 -0.39 -2.07 16 15 C -0.05 -0.48 9.53 -39.23 -0.37 -0.85 16 16 C -0.17 -2.15 5.88 -104.92 -0.62 -2.77 16 17 C 0.56 6.82 8.03 -12.48 -0.10 6.72 16 18 N -0.86 -5.99 8.82 30.46 0.27 -5.72 16 19 O -0.52 -8.26 14.79 5.28 0.08 -8.19 16 20 C 0.04 0.65 6.35 -39.11 -0.25 0.40 16 21 Cl -0.03 -0.49 26.01 -51.86 -1.35 -1.84 16 22 C -0.13 -2.14 8.41 -39.42 -0.33 -2.47 16 23 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.05 1.02 7.20 -51.93 -0.37 0.64 16 25 H 0.05 0.96 7.57 -51.93 -0.39 0.56 16 26 H 0.41 4.28 8.81 -40.82 -0.36 3.92 16 27 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 28 H 0.13 0.65 6.39 -52.49 -0.34 0.31 16 29 H 0.40 1.55 6.85 -40.82 -0.28 1.27 16 30 H 0.40 2.27 8.93 -40.82 -0.36 1.91 16 31 H 0.16 2.88 6.41 -52.49 -0.34 2.54 16 LS Contribution 287.22 15.07 4.33 4.33 Total: -1.00 -35.55 287.22 -6.17 -41.72 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -2.40 Total: 4.46 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -3.23 Total: -1.99 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.99 Total: -41.83 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: 0.15 Total: -20.05 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.67 Total: 15.19 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.35 Total: -1.84 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -35.55 -6.17 -41.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201301.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.430 kcal (2) G-P(sol) polarization free energy of solvation -35.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds