Wall clock time and date at job start Tue Mar 31 2020 05:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00093 * 2 1 4 4 H 1.48500 * 109.47028 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46902 * 300.00088 * 3 2 1 6 6 H 1.48494 * 109.47011 * 59.99959 * 3 2 1 7 7 C 1.37881 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99899 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99779 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.47149 * 300.00483 * 9 7 2 11 11 C 1.53007 * 109.46806 * 60.00645 * 9 7 2 12 12 Cl 1.80300 * 109.46610 * 184.99838 * 11 9 7 13 13 O 1.42902 * 109.46758 * 179.97438 * 9 7 2 14 14 C 1.42903 * 113.99656 * 150.00558 * 13 9 7 15 15 C 1.50703 * 109.46948 * 180.02562 * 14 13 9 16 16 C 1.35594 * 120.30323 * 359.97438 * 15 14 13 17 17 C 1.40070 * 121.94548 * 179.72245 * 16 15 14 18 18 C 1.35606 * 121.94028 * 0.28341 * 17 16 15 19 19 C 1.40845 * 119.38823 * 359.97438 * 18 17 16 20 20 N 1.31012 * 138.56221 * 179.97438 * 19 18 17 21 21 O 1.21464 * 109.09080 * 180.02562 * 20 19 18 22 22 N 1.21468 * 116.28549 * 0.02562 * 21 20 19 23 23 C 1.31017 * 109.08791 * 359.97438 * 22 21 20 24 24 H 0.97001 * 119.99547 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46852 * 304.99392 * 11 9 7 26 26 H 1.08999 * 109.47476 * 64.99372 * 11 9 7 27 27 H 1.08997 * 109.47073 * 60.00011 * 14 13 9 28 28 H 1.09005 * 109.46581 * 299.99590 * 14 13 9 29 29 H 1.08002 * 119.03209 * 0.02562 * 16 15 14 30 30 H 1.07998 * 119.03567 * 180.26180 * 17 16 15 31 31 H 1.07993 * 120.30456 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 6 0.3710 -2.5799 -1.2496 12 17 -0.6395 -4.0714 -1.1773 13 8 2.1796 -3.5853 -0.0017 14 6 1.6984 -4.7621 0.6508 15 6 2.7532 -5.8368 0.5905 16 6 3.9397 -5.5975 -0.0207 17 6 4.9461 -6.5691 -0.0917 18 6 4.7883 -7.8057 0.4420 19 6 3.5801 -8.1303 1.0889 20 7 3.0405 -9.1517 1.7070 21 8 1.9243 -8.8476 2.0772 22 7 1.5581 -7.7203 1.8118 23 6 2.5137 -7.1006 1.1642 24 1 -0.4849 0.8401 0.0004 25 1 -0.2765 -1.7042 -1.2951 26 1 1.0024 -2.6114 -2.1375 27 1 0.7948 -5.1109 0.1509 28 1 1.4724 -4.5333 1.6923 29 1 4.1158 -4.6275 -0.4617 30 1 5.8749 -6.3265 -0.5864 31 1 5.5821 -8.5346 0.3724 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210112482.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:12 Heat of formation + Delta-G solvation = 76.194214 kcal Electronic energy + Delta-G solvation = -19344.280111 eV Core-core repulsion = 16043.126812 eV Total energy + Delta-G solvation = -3301.153300 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.056 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -46.56142 -39.01528 -37.18999 -34.92923 -34.69378 -33.47169 -33.05924 -31.72955 -29.08279 -26.52141 -25.31293 -24.78505 -24.51102 -21.08025 -20.27090 -18.94156 -18.85645 -17.84138 -16.86192 -15.88713 -15.86787 -15.01064 -14.78705 -14.29727 -14.05488 -13.25576 -13.00824 -12.88612 -12.68515 -12.28410 -12.16877 -11.87522 -11.67041 -11.47241 -11.27169 -11.12054 -10.93708 -10.87470 -10.46682 -9.99669 -9.78282 -9.49376 -9.43285 -8.71350 -8.56900 -8.04855 -6.39818 -4.46796 0.05982 1.20136 1.97589 3.11643 3.19146 3.21394 3.25942 3.36350 3.39689 3.49141 3.72119 4.13320 4.60342 4.68409 4.87107 4.92726 4.96457 5.32545 5.38037 5.77460 5.80369 5.92102 6.05389 6.19789 6.28414 6.37020 6.47433 6.59575 6.81561 7.20770 7.55254 7.84308 8.18958 8.51341 8.68931 9.21355 10.67401 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.022976 B = 0.004698 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.388941 B = 5959.114891 C = 6667.646749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.912 3.088 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.516 4.516 8 H 0.075 0.925 9 C 0.216 3.784 10 H 0.034 0.966 11 C -0.033 4.033 12 Cl -0.250 7.250 13 O -0.383 6.383 14 C 0.086 3.914 15 C -0.021 4.021 16 C -0.082 4.082 17 C -0.065 4.065 18 C -0.095 4.095 19 C 0.025 3.975 20 N -0.359 5.359 21 O 0.371 5.629 22 N -0.342 5.342 23 C 0.024 3.976 24 H 0.270 0.730 25 H 0.129 0.871 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.159 0.841 30 H 0.143 0.857 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.727 -10.549 -0.458 12.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.739 3.261 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.554 4.554 8 H 0.093 0.907 9 C 0.159 3.841 10 H 0.052 0.948 11 C -0.095 4.095 12 Cl -0.224 7.224 13 O -0.303 6.303 14 C 0.009 3.991 15 C -0.024 4.024 16 C -0.104 4.104 17 C -0.087 4.087 18 C -0.116 4.116 19 C -0.127 4.127 20 N -0.083 5.083 21 O 0.134 5.866 22 N -0.063 5.063 23 C -0.128 4.128 24 H 0.080 0.920 25 H 0.147 0.853 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.077 0.923 29 H 0.177 0.823 30 H 0.161 0.839 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.969 -11.250 0.047 12.735 hybrid contribution 0.513 1.346 -0.363 1.486 sum 6.482 -9.903 -0.315 11.840 Atomic orbital electron populations 1.69816 1.06008 1.27749 1.49183 1.25005 0.95125 0.99822 0.94211 0.86192 0.80007 0.82007 0.77885 1.19338 1.20639 1.20632 1.21081 0.94234 0.88177 1.51865 0.90678 1.20050 0.87319 0.84172 0.92535 0.94834 1.25915 0.95244 0.85675 1.02675 1.98609 1.76038 1.48842 1.98929 1.87761 1.43653 1.21351 1.77500 1.21475 0.94327 0.85495 0.97775 1.18793 0.96894 0.90020 0.96691 1.21003 0.91221 1.00965 0.97181 1.21110 0.99489 0.91902 0.96221 1.19861 0.93823 0.98031 0.99885 1.22847 0.99065 0.89150 1.01684 1.75168 0.95775 1.22199 1.15148 1.85343 1.23560 1.23775 1.53954 1.75250 1.21661 0.93898 1.15465 1.22653 0.90227 0.98402 1.01519 0.92025 0.85310 0.90835 0.89628 0.92265 0.82319 0.83895 0.84062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.08 11.29 55.43 0.63 -22.46 16 2 C 0.06 1.53 5.29 -17.82 -0.09 1.44 16 3 Si 0.91 19.57 29.54 -169.99 -5.02 14.55 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.52 -13.04 8.89 -34.44 -0.31 -13.34 16 8 H 0.08 1.90 7.81 -52.49 -0.41 1.49 16 9 C 0.22 5.08 2.38 -27.88 -0.07 5.01 16 10 H 0.03 0.86 7.79 -51.93 -0.40 0.46 16 11 C -0.03 -0.73 6.17 37.16 0.23 -0.50 16 12 Cl -0.25 -5.07 26.09 -51.86 -1.35 -6.42 16 13 O -0.38 -8.09 8.40 -35.23 -0.30 -8.38 16 14 C 0.09 1.62 5.90 36.01 0.21 1.84 16 15 C -0.02 -0.35 5.88 -104.58 -0.62 -0.96 16 16 C -0.08 -1.15 9.29 -39.84 -0.37 -1.52 16 17 C -0.07 -0.70 9.90 -39.84 -0.39 -1.09 16 18 C -0.10 -1.07 10.08 -39.54 -0.40 -1.47 16 19 C 0.02 0.35 7.76 -83.03 -0.64 -0.29 16 20 N -0.36 -5.15 12.29 31.87 0.39 -4.76 16 21 O 0.37 5.38 11.67 26.94 0.31 5.69 16 22 N -0.34 -5.52 12.29 31.88 0.39 -5.13 16 23 C 0.02 0.39 7.48 -83.03 -0.62 -0.23 16 24 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 25 H 0.13 3.12 5.95 -51.93 -0.31 2.81 16 26 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 27 H 0.09 1.67 5.09 -51.93 -0.26 1.41 16 28 H 0.06 1.14 8.09 -51.93 -0.42 0.72 16 29 H 0.16 2.28 6.90 -52.49 -0.36 1.92 16 30 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 286.10 15.07 4.31 4.31 Total: -1.00 -26.32 286.10 -6.28 -32.60 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -2.57 Total: 1.11 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -3.07 Total: -11.11 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 1.41 Total: -32.34 kcal Atomic # 8 Polarization: -2.71 SS G_CDS: 0.02 Total: -2.69 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Atomic # 17 Polarization: -5.07 SS G_CDS: -1.35 Total: -6.42 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -26.32 -6.28 -32.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210112482.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.791 kcal (2) G-P(sol) polarization free energy of solvation -26.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds